Rroxscaffold_7G00180890

rho-N domain-containing protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0007951
Physical Location & Seq
Reverse (-)
20218207 .. 20220595
2389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00180890.1

Sequence Viewer

Length: 597 bp
ATGTTGGACCAACCAGAAAAGACTGGCCGATATAGTGAAAGAAAAAACACGGCTTCTTTGGATTCAATTAACAGTGTGAAGGATTATGCTGAAGAGCCTACTGCCTCTTTGAGCAGGCCTGCATCAAATTTTCGACGCAAGTCTCCCATCAATCGATTGACATATCAACCTATTTATTCAGAGGATGATGAGATAGTCAATTCGGTGCAGCATGTGAATTCAACTGACAAAAGAAAAAAGAATTATGCTGAGAGAGTTTCTGAACCAGAACCTGAGCCAGAGCCAGAGCTTGAGATTGATGTGGAGTTGGTACTTGAGCCTGAGCCTGTTCATGATACTGAGTTTGGATTTGAACCTGAACCCGAGCCTGAGCAAGAGATTGTTCAGTTGTTAGAGGATGAGACTTTAGGTACTGAAGAACATGTGGATGATGATGATGAGGACGAAGACAAAGAGCAACTTATTGAACAGACGGATTTGAGTGGATGTAAGCTGCCAGAATTGAGGGCACTTGCCAAGTCTCGAGGCGTGAAAGGGTTCTCAAAGATGAGGAAGGCCGAGCTTCTGGAGTTGCTAACTGGTGGGAGCTTAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rho_N

Protein Analysis

198

Amino Acids

22.53

Weight (kDa)

4.41

Isoelectric Point (pI)

62.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rho_N PF07498 160 - 190 3.8e-07 Rho termination factor, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 25
AcsI RAATTY 2 cut(s) 127, 217
AcuI CTGAAG 2 cut(s) 111, 435
AfaI GTAC 2 cut(s) 312, 412
AflIII ACRYGT 1 cut(s) 421
AgsI TTSAA 4 cut(s) 66, 222, 353, 467
AluBI AGCT 4 cut(s) 289, 493, 562, 588
AluI AGCT 4 cut(s) 289, 493, 562, 588
Alw26I GTCTC 3 cut(s) 147, 395, 525
AlwNI CAGNNNCTG 1 cut(s) 272
Ama87I CYCGRG 2 cut(s) 362, 522
AoxI GGCC 3 cut(s) 25, 116, 555
ApeKI GCWGC 2 cut(s) 208, 493
ApoI RAATTY 2 cut(s) 127, 217
Asp700I GAANNNNTTC 1 cut(s) 536
AspS9I GGNCC 1 cut(s) 7
AvaI CYCGRG 2 cut(s) 362, 522
AvaII GGWCC 1 cut(s) 7
BaeGI GKGCMC 1 cut(s) 511
BbsI GAAGAC 1 cut(s) 453
BbvI GCAGC 2 cut(s) 220, 480
BccI CCATC 1 cut(s) 155
BceAI ACGGC 1 cut(s) 66
BcoDI GTCTC 3 cut(s) 147, 395, 525
BisI GCNGC 2 cut(s) 209, 494
BlsI GCNGC 2 cut(s) 210, 495
Bme18I GGWCC 1 cut(s) 7
BmeT110I CYCGRG 2 cut(s) 362, 522
BmgT120I GGNCC 1 cut(s) 7
BmsI GCATC 1 cut(s) 131
BoxI GACNNNNGTC 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 453
BpmI CTGGAG 1 cut(s) 587
Bpu10I CCTNAGC 3 cut(s) 273, 321, 369
BpuEI CTTGAG 2 cut(s) 311, 335
Bsa29I ATCGAT 1 cut(s) 154
Bse1I ACTGG 2 cut(s) 28, 583
BseCI ATCGAT 1 cut(s) 154
BseGI GGATG 4 cut(s) 190, 403, 433, 491
BseMII CTCAG 5 cut(s) 240, 264, 312, 330, 360
BseNI ACTGG 2 cut(s) 28, 583
BseSI GKGCMC 1 cut(s) 511
BseXI GCAGC 2 cut(s) 220, 480
BsgI GTGCAG 1 cut(s) 227
BshFI GGCC 3 cut(s) 27, 118, 557
BshVI ATCGAT 1 cut(s) 154
BsiHKCI CYCGRG 2 cut(s) 362, 522
BsmAI GTCTC 3 cut(s) 147, 395, 525
BsnI GGCC 3 cut(s) 27, 118, 557
BsoBI CYCGRG 2 cut(s) 362, 522
Bsp1286I GDGCHC 1 cut(s) 511
BspANI GGCC 3 cut(s) 27, 118, 557
BspCNI CTCAG 5 cut(s) 241, 265, 313, 331, 361
BspDI ATCGAT 1 cut(s) 154
BspHI TCATGA 1 cut(s) 331
BspQI GCTCTTC 1 cut(s) 87
BsrI ACTGG 2 cut(s) 28, 583
Bst4CI ACNGT 1 cut(s) 74
Bst6I CTCTTC 1 cut(s) 87
BstC8I GCNNGC 2 cut(s) 116, 120
BstDEI CTNAG 6 cut(s) 249, 273, 321, 339, 369, 589
BstF5I GGATG 4 cut(s) 190, 403, 433, 491
BstMAI GTCTC 3 cut(s) 147, 395, 525
BstNSI RCATGY 2 cut(s) 215, 425
BstPAI GACNNNNGTC 1 cut(s) 139
BstSLI GKGCMC 1 cut(s) 511
BstV1I GCAGC 2 cut(s) 220, 480
BstV2I GAAGAC 1 cut(s) 453
Bsu15I ATCGAT 1 cut(s) 154
BsuRI GGCC 3 cut(s) 27, 118, 557
BsuTUI ATCGAT 1 cut(s) 154
BtsCI GGATG 4 cut(s) 190, 403, 433, 491
BtsIMutI CAGTG 1 cut(s) 79
Cac8I GCNNGC 2 cut(s) 116, 120
CaiI CAGNNNCTG 1 cut(s) 272
CciI TCATGA 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 7
ClaI ATCGAT 1 cut(s) 154
CseI GACGC 1 cut(s) 144
Csp6I GTAC 2 cut(s) 311, 411
CviAII CATG 3 cut(s) 212, 332, 422
CviQI GTAC 2 cut(s) 311, 411
DdeI CTNAG 6 cut(s) 249, 273, 321, 339, 369, 589
EaeI YGGCCR 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco147I AGGCCT 1 cut(s) 118
Eco47I GGWCC 1 cut(s) 7
Eco57I CTGAAG 2 cut(s) 111, 435
Eco88I CYCGRG 2 cut(s) 362, 522
EcoRI GAATTC 1 cut(s) 217
FaeI CATG 3 cut(s) 215, 335, 425
FaiI YATR 7 cut(s) 33, 87, 163, 213, 246, 333, 423
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FatI CATG 3 cut(s) 211, 331, 421
Fnu4HI GCNGC 2 cut(s) 209, 494
FokI GGATG 4 cut(s) 197, 410, 440, 498
Fsp4HI GCNGC 2 cut(s) 209, 494
GluI GCNGC 2 cut(s) 209, 494
GsuI CTGGAG 1 cut(s) 587
HaeIII GGCC 3 cut(s) 27, 118, 557
HgaI GACGC 1 cut(s) 144
Hin1II CATG 3 cut(s) 215, 335, 425
HinfI GANTC 1 cut(s) 62
Hpy188I TCNGA 2 cut(s) 181, 262
Hpy188III TCNNGA 3 cut(s) 332, 522, 566
Hpy99I CGWCG 1 cut(s) 138
HpyAV CCTTC 2 cut(s) 73, 547
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4V TGCA 2 cut(s) 122, 208
HpyF3I CTNAG 6 cut(s) 249, 273, 321, 339, 369, 589
Hsp92II CATG 3 cut(s) 215, 335, 425
LguI GCTCTTC 1 cut(s) 87
LmnI GCTCC 1 cut(s) 585
Lsp1109I GCAGC 2 cut(s) 220, 480
LweI GCATC 1 cut(s) 131
MboII GAAGA 3 cut(s) 104, 428, 458
MhlI GDGCHC 1 cut(s) 511
MluCI AATT 6 cut(s) 66, 127, 199, 217, 241, 500
MnlI CCTC 7 cut(s) 115, 175, 388, 433, 498, 518, 543
MroXI GAANNNNTTC 1 cut(s) 536
MseI TTAA 1 cut(s) 69
MslI CAYNNNNRTG 1 cut(s) 426
NlaIII CATG 3 cut(s) 215, 335, 425
NmeAIII GCCGAG 1 cut(s) 583
NspI RCATGY 2 cut(s) 215, 425
PaeR7I CTCGAG 1 cut(s) 522
PagI TCATGA 1 cut(s) 331
PceI AGGCCT 1 cut(s) 118
PciI ACATGT 1 cut(s) 421
PciSI GCTCTTC 1 cut(s) 87
PdmI GAANNNNTTC 1 cut(s) 536
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 2 cut(s) 210, 495
PscI ACATGT 1 cut(s) 421
PshAI GACNNNNGTC 1 cut(s) 139
PspPI GGNCC 1 cut(s) 7
PstNI CAGNNNCTG 1 cut(s) 272
RsaI GTAC 2 cut(s) 312, 412
RsaNI GTAC 2 cut(s) 311, 411
RseI CAYNNNNRTG 1 cut(s) 426
SapI GCTCTTC 1 cut(s) 87
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 2 cut(s) 209, 494
Sau96I GGNCC 1 cut(s) 7
SduI GDGCHC 1 cut(s) 511
SetI ASST 8 cut(s) 172, 274, 291, 358, 412, 495, 564, 590
SfaNI GCATC 1 cut(s) 131
Sfr274I CTCGAG 1 cut(s) 522
SinI GGWCC 1 cut(s) 7
SlaI CTCGAG 1 cut(s) 522
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 3 cut(s) 290, 314, 522
SmoI CTYRAG 3 cut(s) 290, 314, 522
Sse9I AATT 6 cut(s) 66, 127, 199, 217, 241, 500
SseBI AGGCCT 1 cut(s) 118
StuI AGGCCT 1 cut(s) 118
TaaI ACNGT 1 cut(s) 74
TaqI TCGA 3 cut(s) 133, 154, 523
TasI AATT 6 cut(s) 66, 127, 199, 217, 241, 500
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TscAI CASTG 1 cut(s) 79
TseI GCWGC 2 cut(s) 208, 493
TspDTI ATGAA 1 cut(s) 320
TspGWI ACGGA 1 cut(s) 488
TspRI CASTG 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 7
XapI RAATTY 2 cut(s) 127, 217
XceI RCATGY 2 cut(s) 215, 425
XhoI CTCGAG 1 cut(s) 522
XmnI GAANNNNTTC 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.