Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007951

Physical Location & Seq

Genomic Coordinates Reverse (-)

17760834 .. 17763344

Gene Structure 2511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g21350.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGTCACAGAGCGTTCATCTCATCTGTTATGGACCATCAGATAGCAAATGTCTACCTTGTTCTGGAATTTCCAGAAGAGTAGCCTCTGTGTATCCTTGCTCTTCTCATTTCAAGTCGCAGGTCAGGGTTGGATCACTAAACGGTGCTTATGCTGGGGCGTCTTTTACGTGCAGATCAAGTTCTAGTGGTCGTAATAGAAATCCAGAATTTTCAAGGCAAAATAGGCAAGGATACTCCCGGGGGAGGAACAGGAGAAATGAAGATAGGGATGGCTTTGAAAACCTTGAAGAATCTGATTTACTTTCTGCTAAAAATGGGCCAACGCACTCCCTCCCTAGTAACACAAAATTTGGGGCTACTGCAGCCCCTGGTCCCAGAGAAAAAGAGATTGTTGAGTTGTTCAGGAAAGTCCAGGCTCAGCTTCGGGAGAGAACTGCTGTTAAAGAAGAAAAGAAGGTTGAACCCGTGCAAGGGCAAGGTAAAGAGAATGAAACTGTGGATTCTCTTCTTAAACTACTAAGGAAACATTCAGCTGAACAGGCAAAGAGAACCAGTAATGGGGTTGGAAACAAAGACTTTATGTTAGACCAACCAGAGAAGAGTGACCGATATAGTGAAAGAAAAAACAGGGGTTCTTTGGATTCAAATAACAGCATGAAGGACTATGCTGAAGAGCCTACTGCCTCTTTGAGCAGGCCTGCATCAAATTTTCGACGCAAGTCTCCCATTAATCGATTGACATATCAGCCTATTTATTCAGAGGATGATGAGATAGTCAATTCGGTGCAGCATGTGAATTCAACTGACAAAAGGAAAAAGAATTATGCTGAAAGAGTTTCTAAACCAGAACCAGAGCAGGAGCCTGAGCTTGACATTGATGTGGAGTCGGTACTTGAGGCTGAGCCTGAGCCTCTTCACGTGAACGACATTGACTTTGAGCCTGAGCCCGAGCCTGAGCAAGAGATTGTTCAGTTGTTAGAGGATGAGACTTCAGGTCCTGAAGAAAATGTTGATGATGATGCTGATGAGGAGGAGGAGGATGAAGACAAAGAGCAACTTATTGAACAGAGGGATTTGAGTGCATGTAAGCTACCAGAATTAAGGGCACTTGCCAAGTCTCGAGGCATGAAAGGGTTCTCAAAGATGAAGAAGGCCGAGCTTCTGGAGTTGCTAAGTGGTGGGAGCTTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rho_N

Protein Analysis

398

Amino Acids

44.64

Weight (kDa)

5.17

Isoelectric Point (pI)

56.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06190 AT1G06190 AT1G06190 AT1G06190 AT1G06190 AT2G31150
fragaria_vesca	FvH4_2g21350
malus_domestica	MD05G1196200.v1.1 MD10G1183500.v1.1
prunus_persica	Prupe.8G222600_v2.0.a1
pyrus_communis	pycom05g18320 pycom10g15850
rosa_chinensis	RchiOBHm_Chr6g0287941
rosa_laevigata	RLG00000012454
rosa_multiflora	Rmu_sc0000042.1_g000002
rosa_roxburghii	Rroxscaffold_7G00180650 Rroxscaffold_7G00180890
rosa_rugosa	Rorug06G0193600
rosa_samantha	Rh6AG302800 Rh6BG309000 Rh6CG300700 Rh6CG316700 Rh6DG301500
rosa_wichuraiana	Rw6G026180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	109
AccI	GTMKAC	1 cut(s)	52
AclWI	GGATC	1 cut(s)	139
AcsI	RAATTY	5 cut(s)	66, 206, 347, 706, 796
AcuI	CTGAAG	3 cut(s)	690, 975, 1020
AcvI	CACGTG	1 cut(s)	919
AcyI	GRCGYC	1 cut(s)	158
AfaI	GTAC	1 cut(s)	891
AfiI	CCNNNNNNNGG	5 cut(s)	62, 243, 470, 471, 558
AgsI	TTSAA	8 cut(s)	112, 213, 278, 287, 461, 645, 801, 1064
AhdI	GACNNNNNGTC	1 cut(s)	993
AjnI	CCWGG	2 cut(s)	367, 411
AluBI	AGCT	6 cut(s)	421, 533, 868, 1090, 1159, 1185
AluI	AGCT	6 cut(s)	421, 533, 868, 1090, 1159, 1185
Alw26I	GTCTC	3 cut(s)	726, 980, 1122
AlwI	GGATC	1 cut(s)	139
AlwNI	CAGNNNCTG	2 cut(s)	368, 998
Ama87I	CYCGRG	3 cut(s)	237, 947, 1119
AoxI	GGCC	3 cut(s)	317, 695, 1152
ApeKI	GCWGC	2 cut(s)	362, 787
ApoI	RAATTY	5 cut(s)	66, 206, 347, 706, 796
ArsI	GACNNNNNNTTYG	2 cut(s)	917, 949
AseI	ATTAAT	1 cut(s)	729
Asp700I	GAANNNNTTC	1 cut(s)	1133
AspS9I	GGNCC	4 cut(s)	32, 317, 371, 995
AsuC2I	CCSGG	2 cut(s)	238, 239
AvaI	CYCGRG	3 cut(s)	237, 947, 1119
AvaII	GGWCC	3 cut(s)	32, 371, 995
BaeGI	GKGCMC	1 cut(s)	1108
BanII	GRGCYC	1 cut(s)	948
BbrPI	CACGTG	1 cut(s)	919
BbsI	GAAGAC	1 cut(s)	1050
BbvI	GCAGC	2 cut(s)	374, 799
BccI	CCATC	2 cut(s)	43, 263
BciT130I	CCWGG	2 cut(s)	369, 413
BciVI	GTATCC	2 cut(s)	102, 224
BcnI	CCSGG	2 cut(s)	238, 239
BcoDI	GTCTC	3 cut(s)	726, 980, 1122
BfaI	CTAG	2 cut(s)	183, 336
BfmI	CTRYAG	1 cut(s)	360
BfuAI	ACCTGC	1 cut(s)	109
BfuI	GTATCC	2 cut(s)	102, 224
BisI	GCNGC	2 cut(s)	363, 788
BlpI	GCTNAGC	2 cut(s)	417, 900
BlsI	GCNGC	2 cut(s)	364, 789
Bme1390I	CCNGG	4 cut(s)	238, 239, 369, 413
Bme18I	GGWCC	3 cut(s)	32, 371, 995
BmeRI	GACNNNNNGTC	1 cut(s)	993
BmeT110I	CYCGRG	3 cut(s)	237, 947, 1119
BmgT120I	GGNCC	4 cut(s)	32, 317, 371, 995
BmiI	GGNNCC	2 cut(s)	373, 861
BmrFI	CCNGG	4 cut(s)	238, 239, 369, 413
BmsI	GCATC	2 cut(s)	710, 1009
BoxI	GACNNNNGTC	1 cut(s)	718
BpiI	GAAGAC	1 cut(s)	1050
BpmI	CTGGAG	1 cut(s)	1184
Bpu10I	CCTNAGC	4 cut(s)	864, 906, 942, 954
Bpu1102I	GCTNAGC	2 cut(s)	417, 900
BpuEI	CTTGAG	1 cut(s)	914
BpuMI	CCSGG	2 cut(s)	238, 239
Bsa29I	ATCGAT	1 cut(s)	733
BsaAI	YACGTR	2 cut(s)	168, 919
BsaHI	GRCGYC	1 cut(s)	158
BsaJI	CCNNGG	3 cut(s)	237, 238, 367
Bsc4I	CCNNNNNNNGG	5 cut(s)	62, 243, 470, 471, 558
Bse1I	ACTGG	1 cut(s)	552
BseBI	CCWGG	2 cut(s)	369, 413
BseCI	ATCGAT	1 cut(s)	733
BseDI	CCNNGG	3 cut(s)	237, 238, 367
BseGI	GGATG	4 cut(s)	274, 769, 988, 1045
BseLI	CCNNNNNNNGG	5 cut(s)	62, 243, 470, 471, 558
BseMII	CTCAG	6 cut(s)	431, 855, 891, 897, 933, 945
BseNI	ACTGG	1 cut(s)	552
BseRI	GAGGAG	3 cut(s)	1043, 1046, 1049
BseSI	GKGCMC	1 cut(s)	1108
BseXI	GCAGC	2 cut(s)	374, 799
BseYI	CCCAGC	1 cut(s)	152
BsgI	GTGCAG	2 cut(s)	190, 806
BshFI	GGCC	3 cut(s)	319, 697, 1154
BshVI	ATCGAT	1 cut(s)	733
BsiHKCI	CYCGRG	3 cut(s)	237, 947, 1119
BsiSI	CCGG	1 cut(s)	238
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	5 cut(s)	62, 243, 470, 471, 558
BsmAI	GTCTC	3 cut(s)	726, 980, 1122
BsmFI	GGGAC	1 cut(s)	357
BsnI	GGCC	3 cut(s)	319, 697, 1154
BsoBI	CYCGRG	3 cut(s)	237, 947, 1119
Bsp1286I	GDGCHC	2 cut(s)	948, 1108
Bsp143I	GATC	2 cut(s)	131, 173
Bsp1720I	GCTNAGC	2 cut(s)	417, 900
BspANI	GGCC	3 cut(s)	319, 697, 1154
BspCNI	CTCAG	6 cut(s)	430, 856, 892, 898, 934, 946
BspDI	ATCGAT	1 cut(s)	733
BspLI	GGNNCC	2 cut(s)	373, 861
BspMAI	CTGCAG	1 cut(s)	364
BspMI	ACCTGC	1 cut(s)	109
BspPI	GGATC	1 cut(s)	139
BspQI	GCTCTTC	2 cut(s)	106, 666
BsrI	ACTGG	1 cut(s)	552
BssECI	CCNNGG	3 cut(s)	237, 238, 367
BssMI	GATC	2 cut(s)	131, 173
BssNI	GRCGYC	1 cut(s)	158
Bst2UI	CCWGG	2 cut(s)	369, 413
Bst4CI	ACNGT	2 cut(s)	143, 496
Bst6I	CTCTTC	6 cut(s)	70, 106, 510, 593, 666, 918
BstACI	GRCGYC	1 cut(s)	158
BstBAI	YACGTR	2 cut(s)	168, 919
BstC8I	GCNNGC	2 cut(s)	695, 699
BstDEI	CTNAG	8 cut(s)	417, 518, 864, 900, 906, 942, 954, 1172
BstF5I	GGATG	4 cut(s)	274, 769, 988, 1045
BstKTI	GATC	2 cut(s)	134, 176
BstMAI	GTCTC	3 cut(s)	726, 980, 1122
BstMBI	GATC	2 cut(s)	131, 173
BstMWI	GCNNNNNNNGC	3 cut(s)	223, 362, 539
BstNI	CCWGG	2 cut(s)	369, 413
BstNSI	RCATGY	2 cut(s)	794, 1086
BstPAI	GACNNNNGTC	1 cut(s)	718
BstSCI	CCNGG	4 cut(s)	236, 237, 367, 411
BstSFI	CTRYAG	1 cut(s)	360
BstSLI	GKGCMC	1 cut(s)	1108
BstV1I	GCAGC	2 cut(s)	374, 799
BstV2I	GAAGAC	1 cut(s)	1050
Bsu15I	ATCGAT	1 cut(s)	733
BsuI	GTATCC	2 cut(s)	102, 224
BsuRI	GGCC	3 cut(s)	319, 697, 1154
BsuTUI	ATCGAT	1 cut(s)	733
BtsCI	GGATG	4 cut(s)	274, 769, 988, 1045
BveI	ACCTGC	1 cut(s)	109
Cac8I	GCNNGC	2 cut(s)	695, 699
CaiI	CAGNNNCTG	2 cut(s)	368, 998
Cfr13I	GGNCC	4 cut(s)	32, 317, 371, 995
Cfr9I	CCCGGG	1 cut(s)	237
ClaI	ATCGAT	1 cut(s)	733
CseI	GACGC	2 cut(s)	147, 723
Csp6I	GTAC	1 cut(s)	890
CviAII	CATG	4 cut(s)	655, 791, 1083, 1126
CviQI	GTAC	1 cut(s)	890
DdeI	CTNAG	8 cut(s)	417, 518, 864, 900, 906, 942, 954, 1172
DpnI	GATC	2 cut(s)	133, 175
DpnII	GATC	2 cut(s)	131, 173
DriI	GACNNNNNGTC	1 cut(s)	993
Eam1104I	CTCTTC	6 cut(s)	70, 106, 510, 593, 666, 918
Eam1105I	GACNNNNNGTC	1 cut(s)	993
EarI	CTCTTC	6 cut(s)	70, 106, 510, 593, 666, 918
Eco147I	AGGCCT	1 cut(s)	697
Eco24I	GRGCYC	1 cut(s)	948
Eco47I	GGWCC	3 cut(s)	32, 371, 995
Eco57I	CTGAAG	3 cut(s)	690, 975, 1020
Eco72I	CACGTG	1 cut(s)	919
Eco88I	CYCGRG	3 cut(s)	237, 947, 1119
EcoO109I	RGGNCCY	1 cut(s)	995
EcoRI	GAATTC	1 cut(s)	796
EcoRII	CCWGG	2 cut(s)	367, 411
EcoT38I	GRGCYC	1 cut(s)	948
FaeI	CATG	4 cut(s)	658, 794, 1086, 1129
FalI	AAGNNNNNCTT	2 cut(s)	1041, 1073
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	4 cut(s)	654, 790, 1082, 1125
FblI	GTMKAC	1 cut(s)	52
Fnu4HI	GCNGC	2 cut(s)	363, 788
FokI	GGATG	4 cut(s)	281, 776, 995, 1052
FriOI	GRGCYC	1 cut(s)	948
Fsp4HI	GCNGC	2 cut(s)	363, 788
FspBI	CTAG	2 cut(s)	183, 336
GluI	GCNGC	2 cut(s)	363, 788
GsaI	CCCAGC	1 cut(s)	156
GsuI	CTGGAG	1 cut(s)	1184
HaeIII	GGCC	3 cut(s)	319, 697, 1154
HapII	CCGG	1 cut(s)	238
HgaI	GACGC	2 cut(s)	147, 723
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	4 cut(s)	658, 794, 1086, 1129
HinfI	GANTC	4 cut(s)	290, 500, 641, 884
HpaII	CCGG	1 cut(s)	238
Hpy166II	GTNNAC	2 cut(s)	53, 922
Hpy188I	TCNGA	3 cut(s)	40, 295, 760
Hpy188III	TCNNGA	8 cut(s)	63, 72, 203, 403, 425, 998, 1119, 1163
Hpy8I	GTNNAC	2 cut(s)	53, 922
Hpy99I	CGWCG	1 cut(s)	717
HpyAV	CCTTC	3 cut(s)	448, 652, 1144
HpyCH4III	ACNGT	2 cut(s)	143, 496
HpyCH4IV	ACGT	2 cut(s)	167, 918
HpyCH4V	TGCA	6 cut(s)	171, 362, 469, 701, 787, 1082
HpyF10VI	GCNNNNNNNGC	3 cut(s)	223, 362, 539
HpyF3I	CTNAG	8 cut(s)	417, 518, 864, 900, 906, 942, 954, 1172
HpySE526I	ACGT	2 cut(s)	167, 918
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	4 cut(s)	658, 794, 1086, 1129
Kzo9I	GATC	2 cut(s)	131, 173
LguI	GCTCTTC	2 cut(s)	106, 666
LmnI	GCTCC	2 cut(s)	859, 1182
Lsp1109I	GCAGC	2 cut(s)	374, 799
LweI	GCATC	2 cut(s)	710, 1009
MaeI	CTAG	2 cut(s)	183, 336
MaeII	ACGT	2 cut(s)	167, 918
MaeIII	GTNAC	3 cut(s)	3, 338, 602
MalI	GATC	2 cut(s)	133, 175
MboI	GATC	2 cut(s)	131, 173
MhlI	GDGCHC	2 cut(s)	948, 1108
MluCI	AATT	8 cut(s)	66, 206, 347, 706, 778, 796, 820, 1097
MlyI	GAGTC	1 cut(s)	893
MmeI	TCCRAC	2 cut(s)	109, 544
MroXI	GAANNNNTTC	1 cut(s)	1133
MseI	TTAA	4 cut(s)	441, 510, 729, 1100
MslI	CAYNNNNRTG	1 cut(s)	878
MspA1I	CMGCKG	1 cut(s)	533
MspI	CCGG	1 cut(s)	238
MspR9I	CCNGG	4 cut(s)	238, 239, 369, 413
MvaI	CCWGG	2 cut(s)	369, 413
MwoI	GCNNNNNNNGC	3 cut(s)	223, 362, 539
NciI	CCSGG	2 cut(s)	238, 239
NdeII	GATC	2 cut(s)	131, 173
NlaIII	CATG	4 cut(s)	658, 794, 1086, 1129
NlaIV	GGNNCC	2 cut(s)	373, 861
NmeAIII	GCCGAG	1 cut(s)	1180
NmuCI	GTSAC	2 cut(s)	3, 602
NspI	RCATGY	2 cut(s)	794, 1086
PaeR7I	CTCGAG	1 cut(s)	1119
PceI	AGGCCT	1 cut(s)	697
PciSI	GCTCTTC	2 cut(s)	106, 666
PdmI	GAANNNNTTC	1 cut(s)	1133
PfeI	GAWTC	3 cut(s)	290, 500, 641
PkrI	GCNGC	2 cut(s)	364, 789
PleI	GAGTC	1 cut(s)	892
PmaCI	CACGTG	1 cut(s)	919
PmlI	CACGTG	1 cut(s)	919
PpsI	GAGTC	1 cut(s)	892
Ppu21I	YACGTR	2 cut(s)	168, 919
PpuMI	RGGWCCY	1 cut(s)	995
PshAI	GACNNNNGTC	1 cut(s)	718
PshBI	ATTAAT	1 cut(s)	729
Psp5II	RGGWCCY	1 cut(s)	995
Psp6I	CCWGG	2 cut(s)	367, 411
PspCI	CACGTG	1 cut(s)	919
PspFI	CCCAGC	1 cut(s)	152
PspGI	CCWGG	2 cut(s)	367, 411
PspN4I	GGNNCC	2 cut(s)	373, 861
PspPI	GGNCC	4 cut(s)	32, 317, 371, 995
PspPPI	RGGWCCY	1 cut(s)	995
PstI	CTGCAG	1 cut(s)	364
PstNI	CAGNNNCTG	2 cut(s)	368, 998
PvuII	CAGCTG	1 cut(s)	533
RsaI	GTAC	1 cut(s)	891
RsaNI	GTAC	1 cut(s)	890
RseI	CAYNNNNRTG	1 cut(s)	878
SapI	GCTCTTC	2 cut(s)	106, 666
SaqAI	TTAA	4 cut(s)	441, 510, 729, 1100
SatI	GCNGC	2 cut(s)	363, 788
Sau3AI	GATC	2 cut(s)	131, 173
Sau96I	GGNCC	4 cut(s)	32, 317, 371, 995
SchI	GAGTC	1 cut(s)	893
ScrFI	CCNGG	4 cut(s)	238, 239, 369, 413
SduI	GDGCHC	2 cut(s)	948, 1108
SfaNI	GCATC	2 cut(s)	710, 1009
SfcI	CTRYAG	1 cut(s)	360
Sfr274I	CTCGAG	1 cut(s)	1119
SinI	GGWCC	3 cut(s)	32, 371, 995
SlaI	CTCGAG	1 cut(s)	1119
SmaI	CCCGGG	1 cut(s)	239
SmiMI	CAYNNNNRTG	1 cut(s)	878
SmlI	CTYRAG	2 cut(s)	893, 1119
SmoI	CTYRAG	2 cut(s)	893, 1119
Sse9I	AATT	8 cut(s)	66, 206, 347, 706, 778, 796, 820, 1097
SseBI	AGGCCT	1 cut(s)	697
SspMI	CTAG	2 cut(s)	183, 336
StuI	AGGCCT	1 cut(s)	697
StyD4I	CCNGG	4 cut(s)	236, 237, 367, 411
TaaI	ACNGT	2 cut(s)	143, 496
TaiI	ACGT	2 cut(s)	170, 921
TaqI	TCGA	3 cut(s)	712, 733, 1120
TaqII	GACCGA	1 cut(s)	621
TasI	AATT	8 cut(s)	66, 206, 347, 706, 778, 796, 820, 1097
TfiI	GAWTC	3 cut(s)	290, 500, 641
Tru1I	TTAA	4 cut(s)	441, 510, 729, 1100
Tru9I	TTAA	4 cut(s)	441, 510, 729, 1100
TseFI	GTSAC	2 cut(s)	3, 602
TseI	GCWGC	2 cut(s)	362, 787
Tsp45I	GTSAC	2 cut(s)	3, 602
TspDTI	ATGAA	7 cut(s)	5, 273, 504, 671, 1056, 1142, 1160
TspMI	CCCGGG	1 cut(s)	237
VpaK11BI	GGWCC	3 cut(s)	32, 371, 995
VspI	ATTAAT	1 cut(s)	729
XapI	RAATTY	5 cut(s)	66, 206, 347, 706, 796
XceI	RCATGY	2 cut(s)	794, 1086
XhoI	CTCGAG	1 cut(s)	1119
XmaI	CCCGGG	1 cut(s)	237
XmiI	GTMKAC	1 cut(s)	52
XmnI	GAANNNNTTC	1 cut(s)	1133
XspI	CTAG	2 cut(s)	183, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.