Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007951

Physical Location & Seq

Genomic Coordinates Reverse (-)

21302381 .. 21304178

Gene Structure 1798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g18320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGTTACAGGGCGTTCATATCATCGGTTCTGGACCATCAGATGCCAAATGTCTTCCGTGTTCAGGAATTTCCAGAAGAGTAGCCCCTTTATATCCCTGCTCTTCTCGTTTCAACCCTAAGTCCAAGTCACAGATCAGGATTGGATCACCGAAAGGTGCTTGCAAGGGGGTGTCTTTTACGTGCAGAACAAGTTCTAGTGGTCGTAATAGAAATCCAGACTTTCCAAGGCAAAACAGACATGGGTACTCCCGTAGCAGGAATAGGAAAAGCGTAGAAAGAGATGGCTTTGAAAACCTTGACGAATCTGACATGCTTTCTTCTAAAAACGGGTCATTGGTCTCTCTTTCAAGTAACACAAAGTTCGGGGCCACTGCATCCCCTGGACCTAGAGAAAAAGAGATTGTTGAGCTGTTCCGGAAGGTCCAGGCTCAACTTCGGGAGAGAAGTGCAGCTAAAGAAGAAAGGAATGTTGAAGCTTCACAAGGGCATGGTAAAGAGAATGCGACTGTGGATTCCCTCCTTAACCTGTTAAGAAAACACTCAGTTGAGCAATCAAAGAGAAACAGCAACAGTGGCAGCAGCAACAAGGACTTCACGTTGGACCAACCAGAAAAGAATTCCCAATATAGTGAAAGAAAAAACACAGCTTCTTTTGATTCAAATAACCTTTTGAAGGATGAGGTTGAAGAACCTACTGCCTCTTTCAGCAGGCCTGCATCAAATTTTCAACGCAAGTCTCCCATTCCTCGGTTAACATACCAGGCCATTTATTCTGAGGATGATCACATAGGCAACACAGTGCCACATGTGAATTCAACTGGGAAAAGAACGAAGAATCATGTTGACAGAGTTCCTAAACCAGAGCCCGAGCCAAAGCTTGAGTTGGAGGCAGAACTTGACCATGAGCCTGAGCATGATGCTAAGTTTAAATTTGAGCCTGAACCTGAGCCTGAGCAAGGGATTTCTCAGCTGTTAGAGGACGAGACCTCAGAAGATAAGATTTCAGTTCTCGAAGAAACTCTCATTGAAGACGATGAGAACAAAGGAGAACGTGTTGAAAGTAGGGACTTGAGTACATTGAAGCTGCCAGAATTAAGGGTACTAGCAAAATCTCGAGGTGCAAAAGGGTTTTCGAAGATGAAGAAGGCTGAGCTTTTGGAGTTGCTAAGCGGGAGCGCGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rho_N

Protein Analysis

395

Amino Acids

43.87

Weight (kDa)

8.14

Isoelectric Point (pI)

50.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06190 AT1G06190 AT1G06190 AT1G06190 AT1G06190 AT2G31150
fragaria_vesca	FvH4_2g21350
malus_domestica	MD05G1196200.v1.1 MD10G1183500.v1.1
prunus_persica	Prupe.8G222600_v2.0.a1
pyrus_communis	pycom05g18320 pycom10g15850
rosa_chinensis	RchiOBHm_Chr6g0287941
rosa_laevigata	RLG00000012454
rosa_multiflora	Rmu_sc0000042.1_g000002
rosa_roxburghii	Rroxscaffold_7G00180650 Rroxscaffold_7G00180890
rosa_rugosa	Rorug06G0193600
rosa_samantha	Rh6AG302800 Rh6BG309000 Rh6CG300700 Rh6CG316700 Rh6DG301500
rosa_wichuraiana	Rw6G026180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1178
AccIII	TCCGGA	1 cut(s)	414
AciI	CCGC	2 cut(s)	1170, 1178
AclWI	GGATC	1 cut(s)	151
AcsI	RAATTY	5 cut(s)	66, 616, 721, 811, 929
AfaI	GTAC	3 cut(s)	245, 1075, 1101
AfiI	CCNNNNNNNGG	5 cut(s)	62, 255, 673, 747, 956
AflIII	ACRYGT	2 cut(s)	805, 1051
AjnI	CCWGG	3 cut(s)	379, 423, 759
AluBI	AGCT	8 cut(s)	409, 452, 476, 647, 877, 970, 1084, 1153
AluI	AGCT	8 cut(s)	409, 452, 476, 647, 877, 970, 1084, 1153
Alw26I	GTCTC	3 cut(s)	343, 741, 977
AlwI	GGATC	1 cut(s)	151
Ama87I	CYCGRG	2 cut(s)	866, 1113
Aor13HI	TCCGGA	1 cut(s)	414
AoxI	GGCC	3 cut(s)	366, 710, 762
ApeKI	GCWGC	4 cut(s)	449, 576, 579, 1084
ApoI	RAATTY	5 cut(s)	66, 616, 721, 811, 929
Asp700I	GAANNNNTTC	1 cut(s)	190
AspLEI	GCGC	1 cut(s)	1178
AspS9I	GGNCC	5 cut(s)	32, 366, 383, 421, 601
AsuHPI	GGTGA	1 cut(s)	138
AsuII	TTCGAA	1 cut(s)	1133
AvaI	CYCGRG	2 cut(s)	866, 1113
AvaII	GGWCC	4 cut(s)	32, 383, 421, 601
BaeI	ACNNNNGTAYC	2 cut(s)	235, 268
BanII	GRGCYC	1 cut(s)	867
BbsI	GAAGAC	2 cut(s)	44, 1035
BbvI	GCAGC	4 cut(s)	461, 588, 591, 1071
BccI	CCATC	2 cut(s)	43, 275
BciT130I	CCWGG	3 cut(s)	381, 425, 761
BclI	TGATCA	1 cut(s)	781
BcoDI	GTCTC	3 cut(s)	343, 741, 977
BfaI	CTAG	3 cut(s)	195, 387, 1103
BisI	GCNGC	4 cut(s)	450, 577, 580, 1085
BlpI	GCTNAGC	2 cut(s)	1149, 1166
BlsI	GCNGC	4 cut(s)	451, 578, 581, 1086
Bme1390I	CCNGG	3 cut(s)	381, 425, 761
Bme18I	GGWCC	4 cut(s)	32, 383, 421, 601
BmeT110I	CYCGRG	2 cut(s)	866, 1113
BmgT120I	GGNCC	5 cut(s)	32, 366, 383, 421, 601
BmiI	GGNNCC	1 cut(s)	367
BmrFI	CCNGG	3 cut(s)	381, 425, 761
BmrI	ACTGGG	1 cut(s)	828
BmsI	GCATC	4 cut(s)	31, 383, 725, 907
BmuI	ACTGGG	1 cut(s)	828
BpiI	GAAGAC	2 cut(s)	44, 1035
Bpu10I	CCTNAGC	3 cut(s)	909, 945, 951
Bpu1102I	GCTNAGC	2 cut(s)	1149, 1166
Bpu14I	TTCGAA	1 cut(s)	1133
BpuEI	CTTGAG	2 cut(s)	899, 1090
BsaAI	YACGTR	1 cut(s)	180
BsaI	GGTCTC	2 cut(s)	343, 977
BsaJI	CCNNGG	3 cut(s)	224, 379, 746
BsaWI	WCCGGW	1 cut(s)	414
BsaXI	ACNNNNNCTCC	2 cut(s)	1038, 1068
Bsc4I	CCNNNNNNNGG	5 cut(s)	62, 255, 673, 747, 956
Bse1I	ACTGG	1 cut(s)	823
BseAI	TCCGGA	1 cut(s)	414
BseBI	CCWGG	3 cut(s)	381, 425, 761
BseDI	CCNNGG	3 cut(s)	224, 379, 746
BseGI	GGATG	3 cut(s)	374, 682, 784
BseLI	CCNNNNNNNGG	5 cut(s)	62, 255, 673, 747, 956
BseMII	CTCAG	8 cut(s)	555, 765, 900, 936, 942, 980, 1002, 1140
BseNI	ACTGG	1 cut(s)	823
BseXI	GCAGC	4 cut(s)	461, 588, 591, 1071
BsgI	GTGCAG	2 cut(s)	202, 468
Bsh1236I	CGCG	1 cut(s)	1178
BshFI	GGCC	3 cut(s)	368, 712, 764
BsiHKCI	CYCGRG	2 cut(s)	866, 1113
BsiSI	CCGG	1 cut(s)	415
BslFI	GGGAC	1 cut(s)	1079
BslI	CCNNNNNNNGG	5 cut(s)	62, 255, 673, 747, 956
BsmAI	GTCTC	3 cut(s)	343, 741, 977
BsmFI	GGGAC	1 cut(s)	1079
BsmI	GAATGC	1 cut(s)	505
BsnI	GGCC	3 cut(s)	368, 712, 764
Bso31I	GGTCTC	2 cut(s)	343, 977
BsoBI	CYCGRG	2 cut(s)	866, 1113
Bsp119I	TTCGAA	1 cut(s)	1133
Bsp1286I	GDGCHC	1 cut(s)	867
Bsp13I	TCCGGA	1 cut(s)	414
Bsp143I	GATC	3 cut(s)	132, 143, 781
Bsp1720I	GCTNAGC	2 cut(s)	1149, 1166
BspACI	CCGC	2 cut(s)	1170, 1178
BspANI	GGCC	3 cut(s)	368, 712, 764
BspCNI	CTCAG	8 cut(s)	554, 766, 901, 937, 943, 979, 1001, 1141
BspEI	TCCGGA	1 cut(s)	414
BspFNI	CGCG	1 cut(s)	1178
BspLI	GGNNCC	1 cut(s)	367
BspPI	GGATC	1 cut(s)	151
BspQI	GCTCTTC	1 cut(s)	106
BspT104I	TTCGAA	1 cut(s)	1133
BspTNI	GGTCTC	2 cut(s)	343, 977
BsrI	ACTGG	1 cut(s)	823
BssECI	CCNNGG	3 cut(s)	224, 379, 746
BssMI	GATC	3 cut(s)	132, 143, 781
BssT1I	CCWWGG	1 cut(s)	224
Bst2UI	CCWGG	3 cut(s)	381, 425, 761
Bst4CI	ACNGT	3 cut(s)	508, 572, 799
Bst6I	CTCTTC	2 cut(s)	70, 106
BstBAI	YACGTR	1 cut(s)	180
BstBI	TTCGAA	1 cut(s)	1133
BstC8I	GCNNGC	3 cut(s)	160, 710, 714
BstENI	CCTNNNNNAGG	2 cut(s)	671, 954
BstF5I	GGATG	3 cut(s)	374, 682, 784
BstFNI	CGCG	1 cut(s)	1178
BstHHI	GCGC	1 cut(s)	1178
BstKTI	GATC	3 cut(s)	135, 146, 784
BstMAI	GTCTC	3 cut(s)	343, 741, 977
BstMBI	GATC	3 cut(s)	132, 143, 781
BstMWI	GCNNNNNNNGC	1 cut(s)	573
BstNI	CCWGG	3 cut(s)	381, 425, 761
BstNSI	RCATGY	2 cut(s)	313, 809
BstSCI	CCNGG	3 cut(s)	379, 423, 759
BstUI	CGCG	1 cut(s)	1178
BstV1I	GCAGC	4 cut(s)	461, 588, 591, 1071
BstV2I	GAAGAC	2 cut(s)	44, 1035
BsuRI	GGCC	3 cut(s)	368, 712, 764
BtsCI	GGATG	3 cut(s)	374, 682, 784
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	3 cut(s)	369, 577, 804
Cac8I	GCNNGC	3 cut(s)	160, 710, 714
CfoI	GCGC	1 cut(s)	1178
Cfr13I	GGNCC	5 cut(s)	32, 366, 383, 421, 601
Csp6I	GTAC	3 cut(s)	244, 1074, 1100
CviAII	CATG	7 cut(s)	239, 310, 488, 806, 839, 902, 914
CviQI	GTAC	3 cut(s)	244, 1074, 1100
DpnI	GATC	3 cut(s)	134, 145, 783
DpnII	GATC	3 cut(s)	132, 143, 781
DraI	TTTAAA	1 cut(s)	928
Eam1104I	CTCTTC	2 cut(s)	70, 106
EarI	CTCTTC	2 cut(s)	70, 106
Eco130I	CCWWGG	1 cut(s)	224
Eco147I	AGGCCT	1 cut(s)	712
Eco24I	GRGCYC	1 cut(s)	867
Eco31I	GGTCTC	2 cut(s)	343, 977
Eco47I	GGWCC	4 cut(s)	32, 383, 421, 601
Eco88I	CYCGRG	2 cut(s)	866, 1113
EcoNI	CCTNNNNNAGG	2 cut(s)	671, 954
EcoRI	GAATTC	2 cut(s)	616, 811
EcoRII	CCWGG	3 cut(s)	379, 423, 759
EcoT14I	CCWWGG	1 cut(s)	224
EcoT38I	GRGCYC	1 cut(s)	867
ErhI	CCWWGG	1 cut(s)	224
FaeI	CATG	7 cut(s)	242, 313, 491, 809, 842, 905, 917
FaqI	GGGAC	1 cut(s)	1079
FatI	CATG	7 cut(s)	238, 309, 487, 805, 838, 901, 913
FauI	CCCGC	1 cut(s)	1163
FbaI	TGATCA	1 cut(s)	781
Fnu4HI	GCNGC	4 cut(s)	450, 577, 580, 1085
FokI	GGATG	3 cut(s)	361, 689, 791
FriOI	GRGCYC	1 cut(s)	867
Fsp4HI	GCNGC	4 cut(s)	450, 577, 580, 1085
FspBI	CTAG	3 cut(s)	195, 387, 1103
GlaI	GCGC	1 cut(s)	1177
GluI	GCNGC	4 cut(s)	450, 577, 580, 1085
HaeIII	GGCC	3 cut(s)	368, 712, 764
HapII	CCGG	1 cut(s)	415
HhaI	GCGC	1 cut(s)	1178
Hin1II	CATG	7 cut(s)	242, 313, 491, 809, 842, 905, 917
Hin6I	GCGC	1 cut(s)	1176
HinP1I	GCGC	1 cut(s)	1176
HincII	GTYRAC	2 cut(s)	753, 844
HindII	GTYRAC	2 cut(s)	753, 844
HindIII	AAGCTT	2 cut(s)	474, 875
HinfI	GANTC	4 cut(s)	302, 512, 656, 835
HpaI	GTTAAC	1 cut(s)	753
HpaII	CCGG	1 cut(s)	415
HphI	GGTGA	1 cut(s)	138
Hpy166II	GTNNAC	2 cut(s)	753, 844
Hpy188I	TCNGA	4 cut(s)	40, 307, 775, 991
Hpy188III	TCNNGA	9 cut(s)	30, 63, 72, 136, 215, 415, 437, 1010, 1113
Hpy8I	GTNNAC	2 cut(s)	753, 844
HpyAV	CCTTC	3 cut(s)	412, 667, 1138
HpyCH4III	ACNGT	3 cut(s)	508, 572, 799
HpyCH4IV	ACGT	3 cut(s)	179, 596, 1051
HpyCH4V	TGCA	6 cut(s)	162, 183, 374, 449, 716, 1121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	573
HpySE526I	ACGT	3 cut(s)	179, 596, 1051
Hsp92II	CATG	7 cut(s)	242, 313, 491, 809, 842, 905, 917
HspAI	GCGC	1 cut(s)	1176
Kpn2I	TCCGGA	1 cut(s)	414
Ksp22I	TGATCA	1 cut(s)	781
KspAI	GTTAAC	1 cut(s)	753
Kzo9I	GATC	3 cut(s)	132, 143, 781
LguI	GCTCTTC	1 cut(s)	106
LmnI	GCTCC	1 cut(s)	1173
Lsp1109I	GCAGC	4 cut(s)	461, 588, 591, 1071
LweI	GCATC	4 cut(s)	31, 383, 725, 907
MaeI	CTAG	3 cut(s)	195, 387, 1103
MaeII	ACGT	3 cut(s)	179, 596, 1051
MaeIII	GTNAC	3 cut(s)	3, 126, 350
MalI	GATC	3 cut(s)	134, 145, 783
MboI	GATC	3 cut(s)	132, 143, 781
MhlI	GDGCHC	1 cut(s)	867
MluCI	AATT	6 cut(s)	66, 616, 721, 811, 929, 1091
MmeI	TCCRAC	2 cut(s)	579, 864
MnlI	CCTC	9 cut(s)	527, 673, 709, 756, 769, 880, 970, 997, 1109
MroI	TCCGGA	1 cut(s)	414
MroXI	GAANNNNTTC	1 cut(s)	190
MseI	TTAA	5 cut(s)	522, 530, 752, 927, 1094
MspA1I	CMGCKG	1 cut(s)	970
MspI	CCGG	1 cut(s)	415
MspR9I	CCNGG	3 cut(s)	381, 425, 761
Mva1269I	GAATGC	1 cut(s)	505
MvaI	CCWGG	3 cut(s)	381, 425, 761
MvnI	CGCG	1 cut(s)	1178
MwoI	GCNNNNNNNGC	1 cut(s)	573
NdeII	GATC	3 cut(s)	132, 143, 781
NlaIII	CATG	7 cut(s)	242, 313, 491, 809, 842, 905, 917
NlaIV	GGNNCC	1 cut(s)	367
NmuCI	GTSAC	1 cut(s)	126
NspI	RCATGY	2 cut(s)	313, 809
NspV	TTCGAA	1 cut(s)	1133
PaeR7I	CTCGAG	1 cut(s)	1113
PceI	AGGCCT	1 cut(s)	712
PciI	ACATGT	1 cut(s)	805
PciSI	GCTCTTC	1 cut(s)	106
PctI	GAATGC	1 cut(s)	505
PdmI	GAANNNNTTC	1 cut(s)	190
PfeI	GAWTC	4 cut(s)	302, 512, 656, 835
PkrI	GCNGC	4 cut(s)	451, 578, 581, 1086
Ppu21I	YACGTR	1 cut(s)	180
PscI	ACATGT	1 cut(s)	805
Psp6I	CCWGG	3 cut(s)	379, 423, 759
PspGI	CCWGG	3 cut(s)	379, 423, 759
PspN4I	GGNNCC	1 cut(s)	367
PspPI	GGNCC	5 cut(s)	32, 366, 383, 421, 601
PvuII	CAGCTG	1 cut(s)	970
RsaI	GTAC	3 cut(s)	245, 1075, 1101
RsaNI	GTAC	3 cut(s)	244, 1074, 1100
SapI	GCTCTTC	1 cut(s)	106
SaqAI	TTAA	5 cut(s)	522, 530, 752, 927, 1094
SatI	GCNGC	4 cut(s)	450, 577, 580, 1085
Sau3AI	GATC	3 cut(s)	132, 143, 781
Sau96I	GGNCC	5 cut(s)	32, 366, 383, 421, 601
ScrFI	CCNGG	3 cut(s)	381, 425, 761
SduI	GDGCHC	1 cut(s)	867
SfaNI	GCATC	4 cut(s)	31, 383, 725, 907
Sfr274I	CTCGAG	1 cut(s)	1113
SfuI	TTCGAA	1 cut(s)	1133
SinI	GGWCC	4 cut(s)	32, 383, 421, 601
SlaI	CTCGAG	1 cut(s)	1113
SmlI	CTYRAG	3 cut(s)	878, 1069, 1113
SmoI	CTYRAG	3 cut(s)	878, 1069, 1113
Sse9I	AATT	6 cut(s)	66, 616, 721, 811, 929, 1091
SseBI	AGGCCT	1 cut(s)	712
SsiI	CCGC	2 cut(s)	1170, 1178
SspMI	CTAG	3 cut(s)	195, 387, 1103
StuI	AGGCCT	1 cut(s)	712
StyD4I	CCNGG	3 cut(s)	379, 423, 759
StyI	CCWWGG	1 cut(s)	224
TaaI	ACNGT	3 cut(s)	508, 572, 799
TaiI	ACGT	3 cut(s)	182, 599, 1054
TaqI	TCGA	3 cut(s)	1011, 1114, 1133
TasI	AATT	6 cut(s)	66, 616, 721, 811, 929, 1091
TatI	WGTACW	1 cut(s)	1073
TfiI	GAWTC	4 cut(s)	302, 512, 656, 835
Tru1I	TTAA	5 cut(s)	522, 530, 752, 927, 1094
Tru9I	TTAA	5 cut(s)	522, 530, 752, 927, 1094
TscAI	CASTG	3 cut(s)	376, 577, 804
TseFI	GTSAC	1 cut(s)	126
TseI	GCWGC	4 cut(s)	449, 576, 579, 1084
Tsp45I	GTSAC	1 cut(s)	126
TspDTI	ATGAA	2 cut(s)	5, 1154
TspGWI	ACGGA	1 cut(s)	45
TspRI	CASTG	3 cut(s)	376, 577, 804
VpaK11BI	GGWCC	4 cut(s)	32, 383, 421, 601
XagI	CCTNNNNNAGG	2 cut(s)	671, 954
XapI	RAATTY	5 cut(s)	66, 616, 721, 811, 929
XceI	RCATGY	2 cut(s)	313, 809
XhoI	CTCGAG	1 cut(s)	1113
XmnI	GAANNNNTTC	1 cut(s)	190
XspI	CTAG	3 cut(s)	195, 387, 1103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.