Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006564

Physical Location & Seq

Genomic Coordinates Reverse (-)

13472246 .. 13473556

Gene Structure 1311 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G31670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGATATGCGCAAGAATCCGACCGCTAATTTCGTCACCACTAGCTTTCACTATCTCAACAACCAAACACTCCAGAATCAATCTCCGATTACTCCCTCGCCGCTCCTTCTCCGTCATGTCTTCTTCAACCCCACAGAGTCAGATCATAGAACACATCGTCTTATTCAAAACCAAAGACGACGCTGACTCCACCAAAATCACCTCCATGATCAACAACCTCAACGCTCTTGCATATCTCGATCAAGTGCTTCACATCTCCACCTCTCCTCTCCACCGTATCTCCTCCGCTACCGCCTTCACTCACGTACTCCATAGCCGTTACGAATCTAAAGAAGATCTAGCCTCCTACGCTGCACATCCAGATCACGTTCGTGTTGTTAAGGAATCTGTGTTACCGATCTGTGATGATATCATGGCTGTTGATTGGATCGCTGATCGAATCCCCGGAACCGTAGCGCCGCTTCCTGGTTCGGTTGCTAAACTCACATTGCTCAAATTGAAAGAGGATGTAGCAGATGAGGCGAAATCGGAGATTACGGGAGTGATTAAGGGACTAAGTGAGAAATTTCCAGGGATTGATCAGATTACTGTTGGAGAAAACTTTTCTCCTGCTAGAGCTAAAGGTTTCTCTATTGCTTCGATTGCGTATTTCAAGGATTTGAGTGAAATGGAAGCTGTGGATGCTCAGAAAGAGTTGGTGAATTCGCAAAAGGATAAGGTTCGTGATTATGTGGATTCTACCATTGTTGTTGAGTTCGTTGTGCCGTCTTCTTCACAGTCTTCTAGTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009817 GO:0010033 GO:0042221 GO:0042579 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Dabb

Protein Analysis

263

Amino Acids

28.86

Weight (kDa)

6.45

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dabb	PF07876	49 - 143	1e-26	Stress responsive A/B Barrel Domain
Dabb	PF07876	158 - 254	1.2e-20	Stress responsive A/B Barrel Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31670
fragaria_vesca	FvH4_1g08350 FvH4_1g08360
malus_domestica	MD15G1215300.v1.1
prunus_persica	Prupe.7G202000_v2.0.a1
pyrus_communis	pycom15g19100
rosa_chinensis	RchiOBHm_Chr2g0094401
rosa_laevigata	RLG00000016490 RLG00000016491
rosa_multiflora	Rmu_sc0003819.1_g000006 Rmu_sc0003819.1_g000007 Rmu_sc0003819.1_g000008 Rmu_sc0022324.1_g000001 Rmu_sc0022325.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147150 Rroxscaffold_2G00147160
rosa_rugosa	Rorug02G0043900 Rorug02G0044000
rosa_samantha	Rh2AG091900 Rh2AG092000 Rh2BG091900 Rh2BG092000 Rh2CG094400 Rh2CG094500 Rh2DG090700 Rh2DG090800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	10
AccBSI	CCGCTC	1 cut(s)	102
AciI	CCGC	5 cut(s)	23, 100, 285, 291, 458
AclWI	GGATC	1 cut(s)	434
AcsI	RAATTY	2 cut(s)	563, 700
AfaI	GTAC	1 cut(s)	306
AfiI	CCNNNNNNNGG	1 cut(s)	464
AgsI	TTSAA	4 cut(s)	126, 166, 499, 652
AjnI	CCWGG	2 cut(s)	463, 568
AleI	CACNNNNGTG	1 cut(s)	369
AluBI	AGCT	3 cut(s)	44, 617, 674
AluI	AGCT	3 cut(s)	44, 617, 674
AlwI	GGATC	1 cut(s)	434
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	2 cut(s)	563, 700
AspLEI	GCGC	2 cut(s)	11, 457
AsuC2I	CCSGG	1 cut(s)	444
AsuHPI	GGTGA	3 cut(s)	27, 190, 709
BarI	GAAGNNNNNNTAC	2 cut(s)	444, 476
BbsI	GAAGAC	3 cut(s)	111, 759, 771
BbvI	GCAGC	1 cut(s)	337
BceAI	ACGGC	2 cut(s)	300, 748
BciT130I	CCWGG	2 cut(s)	465, 570
BclI	TGATCA	2 cut(s)	207, 577
BcnI	CCSGG	1 cut(s)	444
BfaI	CTAG	4 cut(s)	41, 338, 612, 783
BfmI	CTRYAG	1 cut(s)	788
BfoI	RGCGCY	1 cut(s)	458
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	3 cut(s)	100, 351, 458
BlsI	GCNGC	3 cut(s)	101, 352, 459
Bme1390I	CCNGG	3 cut(s)	444, 465, 570
BmiI	GGNNCC	1 cut(s)	448
BmrFI	CCNGG	3 cut(s)	444, 465, 570
BmsI	GCATC	1 cut(s)	670
BpiI	GAAGAC	3 cut(s)	111, 759, 771
BpmI	CTGGAG	1 cut(s)	55
BpuMI	CCSGG	1 cut(s)	444
BsaAI	YACGTR	1 cut(s)	304
BsaJI	CCNNGG	2 cut(s)	442, 569
BsaXI	ACNNNNNCTCC	4 cut(s)	170, 200, 263, 293
Bsc4I	CCNNNNNNNGG	1 cut(s)	464
Bse3DI	GCAATG	1 cut(s)	485
BseBI	CCWGG	2 cut(s)	465, 570
BseDI	CCNNGG	2 cut(s)	442, 569
BseGI	GGATG	3 cut(s)	355, 511, 685
BseLI	CCNNNNNNNGG	1 cut(s)	464
BseMI	GCAATG	1 cut(s)	485
BseMII	CTCAG	1 cut(s)	698
BseRI	GAGGAG	2 cut(s)	255, 271
BseXI	GCAGC	1 cut(s)	337
BsgI	GTGCAG	1 cut(s)	336
Bsh1285I	CGRYCG	1 cut(s)	23
BsiEI	CGRYCG	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	444
BslFI	GGGAC	1 cut(s)	564
BslI	CCNNNNNNNGG	1 cut(s)	464
BsmFI	GGGAC	1 cut(s)	564
Bsp143I	GATC	9 cut(s)	141, 207, 238, 334, 361, 396, 426, 433, 577
BspACI	CCGC	5 cut(s)	23, 100, 285, 291, 458
BspCNI	CTCAG	1 cut(s)	697
BspLI	GGNNCC	1 cut(s)	448
BspPI	GGATC	1 cut(s)	434
BsrBI	CCGCTC	1 cut(s)	102
BsrDI	GCAATG	1 cut(s)	485
BssECI	CCNNGG	2 cut(s)	442, 569
BssMI	GATC	9 cut(s)	141, 207, 238, 334, 361, 396, 426, 433, 577
Bst2UI	CCWGG	2 cut(s)	465, 570
Bst4CI	ACNGT	4 cut(s)	275, 451, 589, 777
BstBAI	YACGTR	1 cut(s)	304
BstDEI	CTNAG	2 cut(s)	554, 684
BstF5I	GGATG	3 cut(s)	355, 511, 685
BstH2I	RGCGCY	1 cut(s)	458
BstHHI	GCGC	2 cut(s)	11, 457
BstKTI	GATC	9 cut(s)	144, 210, 241, 337, 364, 399, 429, 436, 580
BstMBI	GATC	9 cut(s)	141, 207, 238, 334, 361, 396, 426, 433, 577
BstMCI	CGRYCG	1 cut(s)	23
BstMWI	GCNNNNNNNGC	4 cut(s)	347, 518, 641, 680
BstNI	CCWGG	2 cut(s)	465, 570
BstSCI	CCNGG	3 cut(s)	442, 463, 568
BstSFI	CTRYAG	1 cut(s)	788
BstV1I	GCAGC	1 cut(s)	337
BstV2I	GAAGAC	3 cut(s)	111, 759, 771
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BtsCI	GGATG	3 cut(s)	355, 511, 685
CfoI	GCGC	2 cut(s)	11, 457
CseI	GACGC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	305
CviAII	CATG	3 cut(s)	115, 205, 412
CviJI	RGCY	6 cut(s)	44, 315, 341, 416, 617, 674
CviKI_1	RGCY	6 cut(s)	44, 315, 341, 416, 617, 674
CviQI	GTAC	1 cut(s)	305
DdeI	CTNAG	2 cut(s)	554, 684
DpnI	GATC	9 cut(s)	143, 209, 240, 336, 363, 398, 428, 435, 579
DpnII	GATC	9 cut(s)	141, 207, 238, 334, 361, 396, 426, 433, 577
Eco32I	GATATC	1 cut(s)	409
EcoRI	GAATTC	1 cut(s)	700
EcoRII	CCWGG	2 cut(s)	463, 568
EcoRV	GATATC	1 cut(s)	409
FaeI	CATG	3 cut(s)	118, 208, 415
FaiI	YATR	8 cut(s)	7, 116, 146, 206, 232, 312, 413, 729
FaqI	GGGAC	1 cut(s)	564
FatI	CATG	3 cut(s)	114, 204, 411
FbaI	TGATCA	2 cut(s)	207, 577
Fnu4HI	GCNGC	3 cut(s)	100, 351, 458
FokI	GGATG	3 cut(s)	342, 518, 692
Fsp4HI	GCNGC	3 cut(s)	100, 351, 458
FspBI	CTAG	4 cut(s)	41, 338, 612, 783
FspI	TGCGCA	1 cut(s)	10
GlaI	GCGC	2 cut(s)	10, 456
GluI	GCNGC	3 cut(s)	100, 351, 458
GsuI	CTGGAG	1 cut(s)	55
HaeII	RGCGCY	1 cut(s)	458
HapII	CCGG	1 cut(s)	444
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	2 cut(s)	11, 457
Hin1II	CATG	3 cut(s)	118, 208, 415
Hin6I	GCGC	2 cut(s)	9, 455
HinP1I	GCGC	2 cut(s)	9, 455
HinfI	GANTC	8 cut(s)	15, 75, 136, 185, 323, 383, 438, 734
HpaII	CCGG	1 cut(s)	444
HphI	GGTGA	3 cut(s)	27, 190, 709
Hpy188I	TCNGA	6 cut(s)	20, 86, 141, 529, 582, 687
Hpy188III	TCNNGA	4 cut(s)	72, 236, 359, 722
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	2 cut(s)	115, 304
HpyCH4III	ACNGT	4 cut(s)	275, 451, 589, 777
HpyCH4IV	ACGT	2 cut(s)	303, 366
HpyCH4V	TGCA	2 cut(s)	230, 353
HpyF10VI	GCNNNNNNNGC	4 cut(s)	347, 518, 641, 680
HpyF3I	CTNAG	2 cut(s)	554, 684
HpySE526I	ACGT	2 cut(s)	303, 366
Hsp92II	CATG	3 cut(s)	118, 208, 415
HspAI	GCGC	2 cut(s)	9, 455
Ksp22I	TGATCA	2 cut(s)	207, 577
Kzo9I	GATC	9 cut(s)	141, 207, 238, 334, 361, 396, 426, 433, 577
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	8 cut(s)	85, 372, 450, 457, 477, 555, 582, 621
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	1 cut(s)	670
MaeI	CTAG	4 cut(s)	41, 338, 612, 783
MaeII	ACGT	2 cut(s)	303, 366
MaeIII	GTNAC	3 cut(s)	33, 317, 390
MalI	GATC	9 cut(s)	143, 209, 240, 336, 363, 398, 428, 435, 579
MbiI	CCGCTC	1 cut(s)	102
MboI	GATC	9 cut(s)	141, 207, 238, 334, 361, 396, 426, 433, 577
MboII	GAAGA	6 cut(s)	111, 114, 344, 759, 762, 771
MflI	RGATCY	1 cut(s)	334
MluCI	AATT	4 cut(s)	27, 494, 563, 700
MlyI	GAGTC	2 cut(s)	145, 179
MmeI	TCCRAC	2 cut(s)	43, 571
MnlI	CCTC	9 cut(s)	105, 211, 227, 271, 276, 292, 352, 496, 511
MseI	TTAA	2 cut(s)	378, 546
MslI	CAYNNNNRTG	2 cut(s)	203, 369
MspI	CCGG	1 cut(s)	444
MspR9I	CCNGG	3 cut(s)	444, 465, 570
MvaI	CCWGG	2 cut(s)	465, 570
MwoI	GCNNNNNNNGC	4 cut(s)	347, 518, 641, 680
NciI	CCSGG	1 cut(s)	444
NdeII	GATC	9 cut(s)	141, 207, 238, 334, 361, 396, 426, 433, 577
NlaIII	CATG	3 cut(s)	118, 208, 415
NlaIV	GGNNCC	1 cut(s)	448
NmuCI	GTSAC	1 cut(s)	33
NsbI	TGCGCA	1 cut(s)	10
OliI	CACNNNNGTG	1 cut(s)	369
PfeI	GAWTC	6 cut(s)	15, 75, 323, 383, 438, 734
PkrI	GCNGC	3 cut(s)	101, 352, 459
PleI	GAGTC	2 cut(s)	144, 179
PpsI	GAGTC	2 cut(s)	144, 179
Ppu21I	YACGTR	1 cut(s)	304
Psp6I	CCWGG	2 cut(s)	463, 568
PspGI	CCWGG	2 cut(s)	463, 568
PspN4I	GGNNCC	1 cut(s)	448
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
RseI	CAYNNNNRTG	2 cut(s)	203, 369
SaqAI	TTAA	2 cut(s)	378, 546
SatI	GCNGC	3 cut(s)	100, 351, 458
Sau3AI	GATC	9 cut(s)	141, 207, 238, 334, 361, 396, 426, 433, 577
SchI	GAGTC	2 cut(s)	145, 179
ScrFI	CCNGG	3 cut(s)	444, 465, 570
SfaNI	GCATC	1 cut(s)	670
SfcI	CTRYAG	1 cut(s)	788
SmiMI	CAYNNNNRTG	2 cut(s)	203, 369
Sse9I	AATT	4 cut(s)	27, 494, 563, 700
SsiI	CCGC	5 cut(s)	23, 100, 285, 291, 458
SspMI	CTAG	4 cut(s)	41, 338, 612, 783
StyD4I	CCNGG	3 cut(s)	442, 463, 568
TaaI	ACNGT	4 cut(s)	275, 451, 589, 777
TaiI	ACGT	2 cut(s)	306, 369
TaqI	TCGA	3 cut(s)	237, 436, 638
TasI	AATT	4 cut(s)	27, 494, 563, 700
TauI	GCSGC	2 cut(s)	102, 460
TfiI	GAWTC	6 cut(s)	15, 75, 323, 383, 438, 734
Tru1I	TTAA	2 cut(s)	378, 546
Tru9I	TTAA	2 cut(s)	378, 546
TseFI	GTSAC	1 cut(s)	33
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	33
TspGWI	ACGGA	1 cut(s)	100
XapI	RAATTY	2 cut(s)	563, 700
XspI	CTAG	4 cut(s)	41, 338, 612, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.