Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006564

Physical Location & Seq

Genomic Coordinates Forward (+)

7338619 .. 7342092

Gene Structure 3474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46941

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGACGGCGACTGTGTGTCTCAAGGCCACTCGCTCCTTCTTAAACCCCCTTCCATTCTCTCGCTCCCTCTCACATCCCAAACACCACCACTTCCTCTCTTTCCCCAAAACCCGCATCTCCAGTTTCGCTACCGTCACCATGTCGTCATCCTCCGTCGTCGAGCACATCGTCCTTTTCAAGGTCAAAGACAACGCCGACCCCTCCAAGGTCAACGCATGGGTCAAGGGCCTCAACGGCCTGAGCTCGCTTGATCTTACTCTCCACCTCACCGCCGGTCCCCTCCTCCGCACCCGATCCTCCCCTTTCGCCTTCACCCACCTCCTCCACAGCCGCTACAAGACAAAAGACGACCTCGCCGCCTATACCGTCCACCCGGGCCACATCAGCGTCGTCAAGGATTTAGGCCTCCCTATCTGTGATGACATCATGGCCGTTGACTGGGTCGCGGATGGGCTGACGGGCCCGGTGGCCTTGTCCCCCGGGTCCGCGATCCGGGTCACGGTTTTGAAGTTGAAGGAGGAGTTGGGGGAGGCGGCTAAAGGTGAGGTTTTGGAGGTGATTAAAGGAATTAAGGGGAAGTTGGGCTTGGGAGAGGCGGGGCAGATTAGCGTCGGAGAGAACTTCTCGCCGGGGAGGGCCAGAGGGTATTCGATCGCGTCGGTGGCGGTTTTTAAGGGAGTGAGTGAGATGGAGGAGGTGGAGGAGGTGGAGAAGGACAAGGTTAGGGAGTATTTGGATAGCGTGATTGTTCTCGATTATGTGGTTCCGTCCCTGCAAGTGTCTGAAGATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009817 GO:0010033 GO:0042221 GO:0042579 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Dabb

Protein Analysis

264

Amino Acids

28.54

Weight (kDa)

6.8

Isoelectric Point (pI)

31.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dabb	PF07876	53 - 148	7.3e-19	Stress responsive A/B Barrel Domain
Dabb	PF07876	165 - 255	2.8e-07	Stress responsive A/B Barrel Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31670
fragaria_vesca	FvH4_1g08350 FvH4_1g08360
malus_domestica	MD15G1215300.v1.1
prunus_persica	Prupe.7G202000_v2.0.a1
pyrus_communis	pycom15g19100
rosa_chinensis	RchiOBHm_Chr2g0094401
rosa_laevigata	RLG00000016490 RLG00000016491
rosa_multiflora	Rmu_sc0003819.1_g000006 Rmu_sc0003819.1_g000007 Rmu_sc0003819.1_g000008 Rmu_sc0022324.1_g000001 Rmu_sc0022325.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147150 Rroxscaffold_2G00147160
rosa_rugosa	Rorug02G0043900 Rorug02G0044000
rosa_samantha	Rh2AG091900 Rh2AG092000 Rh2BG091900 Rh2BG092000 Rh2CG094400 Rh2CG094500 Rh2DG090700 Rh2DG090800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	446, 488, 656
AclWI	GGATC	3 cut(s)	288, 484, 782
AcoI	YGGCCR	1 cut(s)	429
AfiI	CCNNNNNNNGG	5 cut(s)	178, 205, 438, 492, 499
AgsI	TTSAA	3 cut(s)	178, 508, 514
AhdI	GACNNNNNGTC	1 cut(s)	15
AjuI	GAANNNNNNNTTGG	4 cut(s)	506, 538, 569, 601
AluBI	AGCT	1 cut(s)	243
AluI	AGCT	1 cut(s)	243
Alw21I	GWGCWC	2 cut(s)	165, 245
Alw26I	GTCTC	1 cut(s)	23
AlwI	GGATC	3 cut(s)	288, 484, 782
Ama87I	CYCGRG	2 cut(s)	373, 479
AoxI	GGCC	9 cut(s)	24, 226, 235, 376, 403, 429, 460, 468, 636
ApaI	GGGCCC	1 cut(s)	464
AspS9I	GGNCC	7 cut(s)	226, 275, 376, 460, 461, 483, 636
AsuC2I	CCSGG	7 cut(s)	374, 375, 464, 480, 481, 494, 630
AsuHPI	GGTGA	5 cut(s)	127, 259, 304, 554, 568
AvaI	CYCGRG	2 cut(s)	373, 479
AvaII	GGWCC	2 cut(s)	275, 483
BaeGI	GKGCMC	1 cut(s)	464
BanII	GRGCYC	2 cut(s)	245, 464
Bbv12I	GWGCWC	2 cut(s)	165, 245
BccI	CCATC	2 cut(s)	443, 682
BceAI	ACGGC	3 cut(s)	21, 250, 416
BcnI	CCSGG	7 cut(s)	374, 375, 464, 480, 481, 494, 630
BcoDI	GTCTC	1 cut(s)	23
BglI	GCCNNNNNGGC	1 cut(s)	234
BisI	GCNGC	3 cut(s)	331, 357, 534
BlsI	GCNGC	3 cut(s)	332, 358, 535
Bme1390I	CCNGG	7 cut(s)	374, 375, 464, 480, 481, 494, 630
Bme18I	GGWCC	2 cut(s)	275, 483
BmeRI	GACNNNNNGTC	1 cut(s)	15
BmeT110I	CYCGRG	2 cut(s)	373, 479
BmgT120I	GGNCC	7 cut(s)	226, 275, 376, 460, 461, 483, 636
BmiI	GGNNCC	4 cut(s)	277, 462, 484, 765
BmrFI	CCNGG	7 cut(s)	374, 375, 464, 480, 481, 494, 630
BmrI	ACTGGG	1 cut(s)	448
BmsI	GCATC	1 cut(s)	123
BmuI	ACTGGG	1 cut(s)	448
BplI	GAGNNNNNCTC	2 cut(s)	608, 640
BpmI	CTGGAG	1 cut(s)	103
Bpu10I	CCTNAGC	1 cut(s)	239
BpuEI	CTTGAG	1 cut(s)	5
BpuMI	CCSGG	7 cut(s)	374, 375, 464, 480, 481, 494, 630
BsaJI	CCNNGG	5 cut(s)	204, 373, 478, 479, 629
Bsc4I	CCNNNNNNNGG	5 cut(s)	178, 205, 438, 492, 499
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	2 cut(s)	120, 443
BseDI	CCNNGG	5 cut(s)	204, 373, 478, 479, 629
BseGI	GGATG	3 cut(s)	73, 146, 454
BseLI	CCNNNNNNNGG	5 cut(s)	178, 205, 438, 492, 499
BseMII	CTCAG	1 cut(s)	230
BseNI	ACTGG	2 cut(s)	120, 443
BseRI	GAGGAG	5 cut(s)	272, 311, 533, 707, 716
BseSI	GKGCMC	1 cut(s)	464
Bsh1236I	CGCG	3 cut(s)	446, 488, 656
Bsh1285I	CGRYCG	1 cut(s)	654
BshFI	GGCC	9 cut(s)	26, 228, 237, 378, 405, 431, 462, 470, 638
BsiEI	CGRYCG	1 cut(s)	654
BsiHKAI	GWGCWC	2 cut(s)	165, 245
BsiHKCI	CYCGRG	2 cut(s)	373, 479
BsiSI	CCGG	6 cut(s)	273, 374, 464, 480, 493, 629
BslFI	GGGAC	3 cut(s)	261, 460, 754
BslI	CCNNNNNNNGG	5 cut(s)	178, 205, 438, 492, 499
BsmAI	GTCTC	1 cut(s)	23
BsmFI	GGGAC	3 cut(s)	261, 460, 754
BsnI	GGCC	9 cut(s)	26, 228, 237, 378, 405, 431, 462, 470, 638
BsoBI	CYCGRG	2 cut(s)	373, 479
Bsp120I	GGGCCC	1 cut(s)	460
Bsp1286I	GDGCHC	3 cut(s)	165, 245, 464
Bsp143I	GATC	5 cut(s)	250, 293, 489, 651, 787
BspANI	GGCC	9 cut(s)	26, 228, 237, 378, 405, 431, 462, 470, 638
BspCNI	CTCAG	1 cut(s)	231
BspFNI	CGCG	3 cut(s)	446, 488, 656
BspLI	GGNNCC	4 cut(s)	277, 462, 484, 765
BspPI	GGATC	3 cut(s)	288, 484, 782
BsrFI	RCCGGY	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	120, 443
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	5 cut(s)	204, 373, 478, 479, 629
BssMI	GATC	5 cut(s)	250, 293, 489, 651, 787
BssT1I	CCWWGG	1 cut(s)	204
Bst4CI	ACNGT	4 cut(s)	13, 133, 367, 502
BstC8I	GCNNGC	1 cut(s)	245
BstDEI	CTNAG	1 cut(s)	239
BstENI	CCTNNNNNAGG	1 cut(s)	176
BstF5I	GGATG	3 cut(s)	73, 146, 454
BstFNI	CGCG	3 cut(s)	446, 488, 656
BstKTI	GATC	5 cut(s)	253, 296, 492, 654, 790
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	5 cut(s)	250, 293, 489, 651, 787
BstMCI	CGRYCG	1 cut(s)	654
BstMWI	GCNNNNNNNGC	3 cut(s)	234, 384, 662
BstSCI	CCNGG	7 cut(s)	372, 373, 462, 478, 479, 492, 628
BstSLI	GKGCMC	1 cut(s)	464
BstUI	CGCG	3 cut(s)	446, 488, 656
BstX2I	RGATCY	1 cut(s)	787
BstYI	RGATCY	1 cut(s)	787
BsuRI	GGCC	9 cut(s)	26, 228, 237, 378, 405, 431, 462, 470, 638
BtsCI	GGATG	3 cut(s)	73, 146, 454
Cac8I	GCNNGC	1 cut(s)	245
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	7 cut(s)	226, 275, 376, 460, 461, 483, 636
Cfr9I	CCCGGG	2 cut(s)	373, 479
CseI	GACGC	3 cut(s)	376, 598, 645
CviAII	CATG	3 cut(s)	139, 216, 427
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	5 cut(s)	252, 295, 491, 653, 789
DpnII	GATC	5 cut(s)	250, 293, 489, 651, 787
DriI	GACNNNNNGTC	1 cut(s)	15
EaeI	YGGCCR	1 cut(s)	429
Eam1105I	GACNNNNNGTC	1 cut(s)	15
Ecl136II	GAGCTC	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	204
Eco147I	AGGCCT	1 cut(s)	405
Eco24I	GRGCYC	2 cut(s)	245, 464
Eco47I	GGWCC	2 cut(s)	275, 483
Eco53kI	GAGCTC	1 cut(s)	243
Eco88I	CYCGRG	2 cut(s)	373, 479
EcoICRI	GAGCTC	1 cut(s)	243
EcoNI	CCTNNNNNAGG	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	204
EcoT38I	GRGCYC	2 cut(s)	245, 464
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	3 cut(s)	142, 219, 430
FaiI	YATR	6 cut(s)	140, 217, 363, 428, 759, 793
FalI	AAGNNNNNCTT	2 cut(s)	569, 601
FaqI	GGGAC	3 cut(s)	261, 460, 754
FatI	CATG	3 cut(s)	138, 215, 426
FauI	CCCGC	2 cut(s)	119, 589
Fnu4HI	GCNGC	3 cut(s)	331, 357, 534
FokI	GGATG	3 cut(s)	60, 133, 461
FriOI	GRGCYC	2 cut(s)	245, 464
Fsp4HI	GCNGC	3 cut(s)	331, 357, 534
GluI	GCNGC	3 cut(s)	331, 357, 534
GsuI	CTGGAG	1 cut(s)	103
HaeIII	GGCC	9 cut(s)	26, 228, 237, 378, 405, 431, 462, 470, 638
HapII	CCGG	6 cut(s)	273, 374, 464, 480, 493, 629
HgaI	GACGC	3 cut(s)	376, 598, 645
Hin1II	CATG	3 cut(s)	142, 219, 430
HincII	GTYRAC	2 cut(s)	211, 436
HindII	GTYRAC	2 cut(s)	211, 436
HpaII	CCGG	6 cut(s)	273, 374, 464, 480, 493, 629
HphI	GGTGA	5 cut(s)	127, 259, 304, 554, 568
Hpy166II	GTNNAC	3 cut(s)	211, 370, 436
Hpy188I	TCNGA	2 cut(s)	614, 784
Hpy188III	TCNNGA	1 cut(s)	752
Hpy8I	GTNNAC	3 cut(s)	211, 370, 436
Hpy99I	CGWCG	5 cut(s)	158, 161, 392, 614, 661
HpyAV	CCTTC	5 cut(s)	46, 59, 319, 508, 706
HpyCH4III	ACNGT	4 cut(s)	13, 133, 367, 502
HpyCH4V	TGCA	1 cut(s)	775
HpyF10VI	GCNNNNNNNGC	3 cut(s)	234, 384, 662
HpyF3I	CTNAG	1 cut(s)	239
Hsp92II	CATG	3 cut(s)	142, 219, 430
Kzo9I	GATC	5 cut(s)	250, 293, 489, 651, 787
LmnI	GCTCC	2 cut(s)	38, 68
LweI	GCATC	1 cut(s)	123
MaeIII	GTNAC	2 cut(s)	133, 496
MalI	GATC	5 cut(s)	252, 295, 491, 653, 789
MboI	GATC	5 cut(s)	250, 293, 489, 651, 787
MflI	RGATCY	1 cut(s)	787
MhlI	GDGCHC	3 cut(s)	165, 245, 464
MluCI	AATT	1 cut(s)	567
MmeI	TCCRAC	1 cut(s)	592
MseI	TTAA	4 cut(s)	41, 561, 570, 672
MspI	CCGG	6 cut(s)	273, 374, 464, 480, 493, 629
MspR9I	CCNGG	7 cut(s)	374, 375, 464, 480, 481, 494, 630
MvnI	CGCG	3 cut(s)	446, 488, 656
MwoI	GCNNNNNNNGC	3 cut(s)	234, 384, 662
NciI	CCSGG	7 cut(s)	374, 375, 464, 480, 481, 494, 630
NdeII	GATC	5 cut(s)	250, 293, 489, 651, 787
NlaIII	CATG	3 cut(s)	142, 219, 430
NlaIV	GGNNCC	4 cut(s)	277, 462, 484, 765
NmuCI	GTSAC	2 cut(s)	133, 496
PceI	AGGCCT	1 cut(s)	405
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PflFI	GACNNNGTC	1 cut(s)	440
PkrI	GCNGC	3 cut(s)	332, 358, 535
Ple19I	CGATCG	1 cut(s)	654
Psp124BI	GAGCTC	1 cut(s)	245
PspN4I	GGNNCC	4 cut(s)	277, 462, 484, 765
PspOMI	GGGCCC	1 cut(s)	460
PspPI	GGNCC	7 cut(s)	226, 275, 376, 460, 461, 483, 636
PsuI	RGATCY	1 cut(s)	787
PsyI	GACNNNGTC	1 cut(s)	440
PvuI	CGATCG	1 cut(s)	654
SacI	GAGCTC	1 cut(s)	245
SaqAI	TTAA	4 cut(s)	41, 561, 570, 672
SatI	GCNGC	3 cut(s)	331, 357, 534
Sau3AI	GATC	5 cut(s)	250, 293, 489, 651, 787
Sau96I	GGNCC	7 cut(s)	226, 275, 376, 460, 461, 483, 636
ScrFI	CCNGG	7 cut(s)	374, 375, 464, 480, 481, 494, 630
SduI	GDGCHC	3 cut(s)	165, 245, 464
SfaNI	GCATC	1 cut(s)	123
SfiI	GGCCNNNNNGGCC	1 cut(s)	234
SinI	GGWCC	2 cut(s)	275, 483
SmaI	CCCGGG	2 cut(s)	375, 481
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	1 cut(s)	567
SseBI	AGGCCT	1 cut(s)	405
SstI	GAGCTC	1 cut(s)	245
StuI	AGGCCT	1 cut(s)	405
StyD4I	CCNGG	7 cut(s)	372, 373, 462, 478, 479, 492, 628
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	4 cut(s)	13, 133, 367, 502
TaqI	TCGA	3 cut(s)	159, 650, 753
TasI	AATT	1 cut(s)	567
TauI	GCSGC	3 cut(s)	333, 359, 536
Tru1I	TTAA	4 cut(s)	41, 561, 570, 672
Tru9I	TTAA	4 cut(s)	41, 561, 570, 672
TseFI	GTSAC	2 cut(s)	133, 496
Tsp45I	GTSAC	2 cut(s)	133, 496
TspGWI	ACGGA	2 cut(s)	142, 756
TspMI	CCCGGG	2 cut(s)	373, 479
Tth111I	GACNNNGTC	1 cut(s)	440
VpaK11BI	GGWCC	2 cut(s)	275, 483
XagI	CCTNNNNNAGG	1 cut(s)	176
XmaI	CCCGGG	2 cut(s)	373, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.