Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022325.1

Orthogroup ID

OG0006564

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 207

Gene Structure 207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022325.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

attagtgtgggagagaacttctcgccggccagggctaaagggtattcgattgcttcagtggcggttttcgagggagtgagccagatggaggccgtggattcgaaggaggagttggcgaagctggagaaggacaaagttagggagtacttggacagcgtcattgttcttgattatgttgttccatccccccaatctgcaagtctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009817 GO:0010033 GO:0042221 GO:0042579 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Dabb

Protein Analysis

68

Amino Acids

7.35

Weight (kDa)

4.58

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31670
fragaria_vesca	FvH4_1g08350 FvH4_1g08360
malus_domestica	MD15G1215300.v1.1
prunus_persica	Prupe.7G202000_v2.0.a1
pyrus_communis	pycom15g19100
rosa_chinensis	RchiOBHm_Chr2g0094401
rosa_laevigata	RLG00000016490 RLG00000016491
rosa_multiflora	Rmu_sc0003819.1_g000006 Rmu_sc0003819.1_g000007 Rmu_sc0003819.1_g000008 Rmu_sc0022324.1_g000001 Rmu_sc0022325.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147150 Rroxscaffold_2G00147160
rosa_rugosa	Rorug02G0043900 Rorug02G0044000
rosa_samantha	Rh2AG091900 Rh2AG092000 Rh2BG091900 Rh2BG092000 Rh2CG094400 Rh2CG094500 Rh2DG090700 Rh2DG090800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	62
AcoI	YGGCCR	1 cut(s)	27
AcuI	CTGAAG	1 cut(s)	39
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	88
AjnI	CCWGG	1 cut(s)	29
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AluBI	AGCT	1 cut(s)	121
AluI	AGCT	1 cut(s)	121
AoxI	GGCC	2 cut(s)	27, 90
AsuII	TTCGAA	1 cut(s)	101
BccI	CCATC	2 cut(s)	79, 190
BceAI	ACGGC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	31
BmcAI	AGTACT	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	31
BplI	GAGNNNNNCTC	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	143
Bpu14I	TTCGAA	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	30, 93
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse118I	RCCGGY	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	31
BseDI	CCNNGG	2 cut(s)	30, 93
BseGI	GGATG	1 cut(s)	182
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	122
BshFI	GGCC	2 cut(s)	29, 92
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	88
BsnI	GGCC	2 cut(s)	29, 92
Bsp119I	TTCGAA	1 cut(s)	101
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	2 cut(s)	29, 92
BspT104I	TTCGAA	1 cut(s)	101
BsrFI	RCCGGY	1 cut(s)	25
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	2 cut(s)	30, 93
Bst2UI	CCWGG	1 cut(s)	31
BstBI	TTCGAA	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	27
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	182
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	29
BsuRI	GGCC	2 cut(s)	29, 92
BtgI	CCRYGG	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	182
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	27
Cfr10I	RCCGGY	1 cut(s)	25
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	145
CviJI	RGCY	5 cut(s)	29, 35, 81, 92, 121
CviKI_1	RGCY	5 cut(s)	29, 35, 81, 92, 121
CviQI	GTAC	1 cut(s)	145
EaeI	YGGCCR	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	29
FaiI	YATR	1 cut(s)	174
FokI	GGATG	1 cut(s)	169
GsuI	CTGGAG	1 cut(s)	143
HaeIII	GGCC	2 cut(s)	29, 92
HapII	CCGG	1 cut(s)	26
HgaI	GACGC	1 cut(s)	145
HinfI	GANTC	1 cut(s)	98
HpaII	CCGG	1 cut(s)	26
Hpy188I	TCNGA	1 cut(s)	206
Hpy188III	TCNNGA	1 cut(s)	167
HpyAV	CCTTC	2 cut(s)	97, 121
HpyCH4V	TGCA	1 cut(s)	197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
KroI	GCCGGC	1 cut(s)	25
KroNI	GCCGGC	1 cut(s)	27
LpnPI	CCDG	5 cut(s)	16, 39, 43, 95, 107
MnlI	CCTC	3 cut(s)	64, 82, 100
MroNI	GCCGGC	1 cut(s)	25
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	1 cut(s)	59
NaeI	GCCGGC	1 cut(s)	27
NgoMIV	GCCGGC	1 cut(s)	25
NspV	TTCGAA	1 cut(s)	101
PdiI	GCCGGC	1 cut(s)	27
PfeI	GAWTC	1 cut(s)	98
PflFI	GACNNNGTC	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	29
PsyI	GACNNNGTC	1 cut(s)	155
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
ScaI	AGTACT	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	31
SetI	ASST	1 cut(s)	123
SfuI	TTCGAA	1 cut(s)	101
SsiI	CCGC	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	29
TaqI	TCGA	3 cut(s)	47, 69, 101
TatI	WGTACW	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	98
TscAI	CASTG	1 cut(s)	63
TspRI	CASTG	1 cut(s)	63
Tth111I	GACNNNGTC	1 cut(s)	155
ZrmI	AGTACT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.