Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003819.1

Orthogroup ID

OG0006564

Physical Location & Seq

Genomic Coordinates Reverse (-)

30089 .. 30940

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003819.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atgactaactcacccactccagacccccgattgcattctcctccggatatgacggcgactgtgtgtctcaaggccactcgctccttcttaaacccccttccattctctcgctccctctcacatcccaaacaccaccacttcctctctttccccaaaacccgcatctccagtttcgccaccgtcaccatgtcgtcatcctccgtcgtcgagcacatcgtcctcttcaaggtcaaagacgaaaccgacccctccaaggtcaactccatgctcaacggcctcaacggcctgacctccctcgatctcaccctccacctcaccgccggtcccctcctccgcacccgatcctcccccttcgccttcacccacctcctccacagccgctacaagaccaaagacgacctcgccgcctataccgtccacccgggccacctcagcgtcgtcaaggagtccgttctcccgatctgcgatgacgtcatggccgttgactgggtcgcggacgggttgacgggcccggtgggtccgtcgccggggtccgcgatccgggtcacgtttttgaagttgaaggaggagctgggggaggcggcgaaaggtgagattttggaggtgattaaagggattaagggcaagttcggagaggtggggcagattagtgtgggagagaacttctcgccggccagggctaaagggtattcgattgcttcagtggcggttttcgagggagtgagccagatggaggccgtggattcgaaggaggagttggcgaagctggagaaggacaaagttagggagtacttggacagcgtcattgttcttgattatgttgttccatccccccaatctgcaagtctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009817 GO:0010033 GO:0042221 GO:0042579 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Dabb

Protein Analysis

283

Amino Acids

30.65

Weight (kDa)

6.84

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31670
fragaria_vesca	FvH4_1g08350 FvH4_1g08360
malus_domestica	MD15G1215300.v1.1
prunus_persica	Prupe.7G202000_v2.0.a1
pyrus_communis	pycom15g19100
rosa_chinensis	RchiOBHm_Chr2g0094401
rosa_laevigata	RLG00000016490 RLG00000016491
rosa_multiflora	Rmu_sc0003819.1_g000006 Rmu_sc0003819.1_g000007 Rmu_sc0003819.1_g000008 Rmu_sc0022324.1_g000001 Rmu_sc0022325.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147150 Rroxscaffold_2G00147160
rosa_rugosa	Rorug02G0043900 Rorug02G0044000
rosa_samantha	Rh2AG091900 Rh2AG092000 Rh2BG091900 Rh2BG092000 Rh2CG094400 Rh2CG094500 Rh2DG090700 Rh2DG090800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	474
AccII	CGCG	2 cut(s)	494, 536
AccIII	TCCGGA	1 cut(s)	43
AciI	CCGC	9 cut(s)	160, 318, 334, 379, 405, 494, 534, 581, 707
AclWI	GGATC	2 cut(s)	336, 532
AcoI	YGGCCR	2 cut(s)	477, 672
AcuI	CTGAAG	1 cut(s)	684
AcyI	GRCGYC	1 cut(s)	471
AfaI	GTAC	1 cut(s)	791
AfiI	CCNNNNNNNGG	6 cut(s)	226, 253, 486, 527, 540, 733
AgsI	TTSAA	3 cut(s)	226, 556, 562
AhdI	GACNNNNNGTC	1 cut(s)	63
AjnI	CCWGG	1 cut(s)	674
AjuI	GAANNNNNNNTTGG	2 cut(s)	740, 772
AluBI	AGCT	2 cut(s)	571, 766
AluI	AGCT	2 cut(s)	571, 766
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	2 cut(s)	336, 532
Ama87I	CYCGRG	1 cut(s)	421
Aor13HI	TCCGGA	1 cut(s)	43
AoxI	GGCC	8 cut(s)	72, 274, 283, 424, 477, 508, 672, 735
ApaI	GGGCCC	1 cut(s)	512
AspS9I	GGNCC	6 cut(s)	323, 424, 508, 509, 518, 531
AsuC2I	CCSGG	5 cut(s)	422, 423, 512, 528, 542
AsuHPI	GGTGA	7 cut(s)	3, 175, 295, 307, 352, 602, 616
AsuII	TTCGAA	1 cut(s)	746
AvaI	CYCGRG	1 cut(s)	421
AvaII	GGWCC	3 cut(s)	323, 518, 531
BaeGI	GKGCMC	1 cut(s)	512
BanII	GRGCYC	1 cut(s)	512
Bbv12I	GWGCWC	1 cut(s)	213
BbvCI	CCTCAGC	1 cut(s)	431
BccI	CCATC	2 cut(s)	724, 835
BceAI	ACGGC	5 cut(s)	69, 289, 298, 464, 722
BciT130I	CCWGG	1 cut(s)	676
BcnI	CCSGG	5 cut(s)	422, 423, 512, 528, 542
BcoDI	GTCTC	1 cut(s)	71
BglI	GCCNNNNNGGC	1 cut(s)	282
BisI	GCNGC	3 cut(s)	379, 405, 582
BlsI	GCNGC	3 cut(s)	380, 406, 583
BmcAI	AGTACT	1 cut(s)	791
Bme1390I	CCNGG	6 cut(s)	422, 423, 512, 528, 542, 676
Bme18I	GGWCC	3 cut(s)	323, 518, 531
BmeRI	GACNNNNNGTC	1 cut(s)	63
BmeT110I	CYCGRG	1 cut(s)	421
BmgT120I	GGNCC	6 cut(s)	323, 424, 508, 509, 518, 531
BmiI	GGNNCC	4 cut(s)	325, 510, 519, 532
BmrFI	CCNGG	6 cut(s)	422, 423, 512, 528, 542, 676
BmrI	ACTGGG	1 cut(s)	496
BmsI	GCATC	1 cut(s)	171
BmuI	ACTGGG	1 cut(s)	496
BplI	GAGNNNNNCTC	2 cut(s)	650, 682
BpmI	CTGGAG	2 cut(s)	151, 788
Bpu10I	CCTNAGC	1 cut(s)	431
Bpu14I	TTCGAA	1 cut(s)	746
BpuEI	CTTGAG	1 cut(s)	53
BpuMI	CCSGG	5 cut(s)	422, 423, 512, 528, 542
BsaHI	GRCGYC	1 cut(s)	471
BsaJI	CCNNGG	5 cut(s)	252, 421, 527, 675, 738
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	6 cut(s)	226, 253, 486, 527, 540, 733
Bse118I	RCCGGY	2 cut(s)	320, 670
Bse1I	ACTGG	2 cut(s)	168, 491
BseAI	TCCGGA	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	676
BseDI	CCNNGG	5 cut(s)	252, 421, 527, 675, 738
BseGI	GGATG	3 cut(s)	121, 194, 827
BseLI	CCNNNNNNNGG	6 cut(s)	226, 253, 486, 527, 540, 733
BseMII	CTCAG	1 cut(s)	445
BseNI	ACTGG	2 cut(s)	168, 491
BseRI	GAGGAG	5 cut(s)	30, 320, 359, 581, 767
BseSI	GKGCMC	1 cut(s)	512
BseYI	CCCAGC	1 cut(s)	571
Bsh1236I	CGCG	2 cut(s)	494, 536
BshFI	GGCC	8 cut(s)	74, 276, 285, 426, 479, 510, 674, 737
BsiHKAI	GWGCWC	1 cut(s)	213
BsiHKCI	CYCGRG	1 cut(s)	421
BsiSI	CCGG	7 cut(s)	44, 321, 422, 512, 527, 541, 671
BslFI	GGGAC	1 cut(s)	309
BslI	CCNNNNNNNGG	6 cut(s)	226, 253, 486, 527, 540, 733
BsmAI	GTCTC	1 cut(s)	71
BsmFI	GGGAC	1 cut(s)	309
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	8 cut(s)	74, 276, 285, 426, 479, 510, 674, 737
BsoBI	CYCGRG	1 cut(s)	421
Bsp119I	TTCGAA	1 cut(s)	746
Bsp120I	GGGCCC	1 cut(s)	508
Bsp1286I	GDGCHC	2 cut(s)	213, 512
Bsp13I	TCCGGA	1 cut(s)	43
Bsp143I	GATC	4 cut(s)	298, 341, 459, 537
BspACI	CCGC	9 cut(s)	160, 318, 334, 379, 405, 494, 534, 581, 707
BspANI	GGCC	8 cut(s)	74, 276, 285, 426, 479, 510, 674, 737
BspCNI	CTCAG	1 cut(s)	444
BspEI	TCCGGA	1 cut(s)	43
BspFNI	CGCG	2 cut(s)	494, 536
BspLI	GGNNCC	4 cut(s)	325, 510, 519, 532
BspPI	GGATC	2 cut(s)	336, 532
BspT104I	TTCGAA	1 cut(s)	746
BsrFI	RCCGGY	2 cut(s)	320, 670
BsrI	ACTGG	2 cut(s)	168, 491
BssAI	RCCGGY	2 cut(s)	320, 670
BssECI	CCNNGG	5 cut(s)	252, 421, 527, 675, 738
BssMI	GATC	4 cut(s)	298, 341, 459, 537
BssNI	GRCGYC	1 cut(s)	471
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	676
Bst4CI	ACNGT	3 cut(s)	61, 181, 415
Bst6I	CTCTTC	1 cut(s)	227
BstACI	GRCGYC	1 cut(s)	471
BstBI	TTCGAA	1 cut(s)	746
BstC8I	GCNNGC	1 cut(s)	672
BstDEI	CTNAG	1 cut(s)	431
BstDSI	CCRYGG	1 cut(s)	738
BstENI	CCTNNNNNAGG	1 cut(s)	224
BstF5I	GGATG	3 cut(s)	121, 194, 827
BstFNI	CGCG	2 cut(s)	494, 536
BstKTI	GATC	4 cut(s)	301, 344, 462, 540
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	4 cut(s)	298, 341, 459, 537
BstMWI	GCNNNNNNNGC	3 cut(s)	282, 432, 704
BstNI	CCWGG	1 cut(s)	676
BstSCI	CCNGG	6 cut(s)	420, 421, 510, 526, 540, 674
BstSLI	GKGCMC	1 cut(s)	512
BstUI	CGCG	2 cut(s)	494, 536
BsuRI	GGCC	8 cut(s)	74, 276, 285, 426, 479, 510, 674, 737
BtgI	CCRYGG	1 cut(s)	738
BtgZI	GCGATG	1 cut(s)	480
BtsCI	GGATG	3 cut(s)	121, 194, 827
BtsIMutI	CAGTG	1 cut(s)	708
Cac8I	GCNNGC	1 cut(s)	672
Cfr10I	RCCGGY	2 cut(s)	320, 670
Cfr13I	GGNCC	6 cut(s)	323, 424, 508, 509, 518, 531
Cfr9I	CCCGGG	1 cut(s)	421
CseI	GACGC	2 cut(s)	424, 790
Csp6I	GTAC	1 cut(s)	790
CviAII	CATG	3 cut(s)	187, 265, 475
CviQI	GTAC	1 cut(s)	790
DdeI	CTNAG	1 cut(s)	431
DpnI	GATC	4 cut(s)	300, 343, 461, 539
DpnII	GATC	4 cut(s)	298, 341, 459, 537
DriI	GACNNNNNGTC	1 cut(s)	63
EaeI	YGGCCR	2 cut(s)	477, 672
Eam1104I	CTCTTC	1 cut(s)	227
Eam1105I	GACNNNNNGTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	227
Eco130I	CCWWGG	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	512
Eco47I	GGWCC	3 cut(s)	323, 518, 531
Eco57I	CTGAAG	1 cut(s)	684
Eco88I	CYCGRG	1 cut(s)	421
EcoNI	CCTNNNNNAGG	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	674
EcoT14I	CCWWGG	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	512
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	3 cut(s)	190, 268, 478
FaiI	YATR	6 cut(s)	50, 188, 266, 411, 476, 819
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	3 cut(s)	186, 264, 474
FauI	CCCGC	1 cut(s)	167
Fnu4HI	GCNGC	3 cut(s)	379, 405, 582
FokI	GGATG	3 cut(s)	108, 181, 814
FriOI	GRGCYC	1 cut(s)	512
Fsp4HI	GCNGC	3 cut(s)	379, 405, 582
GluI	GCNGC	3 cut(s)	379, 405, 582
GsaI	CCCAGC	1 cut(s)	575
GsuI	CTGGAG	2 cut(s)	151, 788
HaeIII	GGCC	8 cut(s)	74, 276, 285, 426, 479, 510, 674, 737
HapII	CCGG	7 cut(s)	44, 321, 422, 512, 527, 541, 671
HgaI	GACGC	2 cut(s)	424, 790
Hin1I	GRCGYC	1 cut(s)	471
Hin1II	CATG	3 cut(s)	190, 268, 478
HincII	GTYRAC	3 cut(s)	259, 484, 504
HindII	GTYRAC	3 cut(s)	259, 484, 504
HinfI	GANTC	2 cut(s)	446, 743
HpaII	CCGG	7 cut(s)	44, 321, 422, 512, 527, 541, 671
HphI	GGTGA	7 cut(s)	3, 175, 295, 307, 352, 602, 616
Hpy166II	GTNNAC	4 cut(s)	259, 418, 484, 504
Hpy188I	TCNGA	2 cut(s)	632, 851
Hpy188III	TCNNGA	4 cut(s)	20, 44, 457, 812
Hpy8I	GTNNAC	4 cut(s)	259, 418, 484, 504
Hpy99I	CGWCG	4 cut(s)	206, 209, 440, 526
HpyAV	CCTTC	7 cut(s)	94, 107, 361, 367, 556, 742, 766
HpyCH4III	ACNGT	3 cut(s)	61, 181, 415
HpyCH4IV	ACGT	2 cut(s)	471, 548
HpyCH4V	TGCA	2 cut(s)	34, 842
HpyF10VI	GCNNNNNNNGC	3 cut(s)	282, 432, 704
HpyF3I	CTNAG	1 cut(s)	431
HpySE526I	ACGT	2 cut(s)	471, 548
Hsp92I	GRCGYC	1 cut(s)	471
Hsp92II	CATG	3 cut(s)	190, 268, 478
Kpn2I	TCCGGA	1 cut(s)	43
KroI	GCCGGC	1 cut(s)	670
KroNI	GCCGGC	1 cut(s)	672
Kzo9I	GATC	4 cut(s)	298, 341, 459, 537
LmnI	GCTCC	3 cut(s)	86, 116, 568
LweI	GCATC	1 cut(s)	171
MaeII	ACGT	2 cut(s)	471, 548
MaeIII	GTNAC	2 cut(s)	181, 544
MalI	GATC	4 cut(s)	300, 343, 461, 539
MboI	GATC	4 cut(s)	298, 341, 459, 537
MboII	GAAGA	1 cut(s)	214
MhlI	GDGCHC	2 cut(s)	213, 512
MlyI	GAGTC	1 cut(s)	455
MroI	TCCGGA	1 cut(s)	43
MroNI	GCCGGC	1 cut(s)	670
MseI	TTAA	3 cut(s)	89, 609, 618
MspI	CCGG	7 cut(s)	44, 321, 422, 512, 527, 541, 671
MspR9I	CCNGG	6 cut(s)	422, 423, 512, 528, 542, 676
Mva1269I	GAATGC	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	676
MvnI	CGCG	2 cut(s)	494, 536
MwoI	GCNNNNNNNGC	3 cut(s)	282, 432, 704
NaeI	GCCGGC	1 cut(s)	672
NciI	CCSGG	5 cut(s)	422, 423, 512, 528, 542
NdeII	GATC	4 cut(s)	298, 341, 459, 537
NgoMIV	GCCGGC	1 cut(s)	670
NlaIII	CATG	3 cut(s)	190, 268, 478
NlaIV	GGNNCC	4 cut(s)	325, 510, 519, 532
NmuCI	GTSAC	2 cut(s)	181, 544
NspV	TTCGAA	1 cut(s)	746
PcsI	WCGNNNNNNNCGW	2 cut(s)	213, 477
PctI	GAATGC	1 cut(s)	34
PdiI	GCCGGC	1 cut(s)	672
PfeI	GAWTC	1 cut(s)	743
PflFI	GACNNNGTC	2 cut(s)	488, 800
PkrI	GCNGC	3 cut(s)	380, 406, 583
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
Psp6I	CCWGG	1 cut(s)	674
PspFI	CCCAGC	1 cut(s)	571
PspGI	CCWGG	1 cut(s)	674
PspN4I	GGNNCC	4 cut(s)	325, 510, 519, 532
PspOMI	GGGCCC	1 cut(s)	508
PspPI	GGNCC	6 cut(s)	323, 424, 508, 509, 518, 531
PsyI	GACNNNGTC	2 cut(s)	488, 800
RsaI	GTAC	1 cut(s)	791
RsaNI	GTAC	1 cut(s)	790
SaqAI	TTAA	3 cut(s)	89, 609, 618
SatI	GCNGC	3 cut(s)	379, 405, 582
Sau3AI	GATC	4 cut(s)	298, 341, 459, 537
Sau96I	GGNCC	6 cut(s)	323, 424, 508, 509, 518, 531
ScaI	AGTACT	1 cut(s)	791
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	6 cut(s)	422, 423, 512, 528, 542, 676
SduI	GDGCHC	2 cut(s)	213, 512
SfaNI	GCATC	1 cut(s)	171
SfiI	GGCCNNNNNGGCC	1 cut(s)	282
SfuI	TTCGAA	1 cut(s)	746
SinI	GGWCC	3 cut(s)	323, 518, 531
SmaI	CCCGGG	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SsiI	CCGC	9 cut(s)	160, 318, 334, 379, 405, 494, 534, 581, 707
StyD4I	CCNGG	6 cut(s)	420, 421, 510, 526, 540, 674
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	3 cut(s)	61, 181, 415
TaiI	ACGT	2 cut(s)	474, 551
TaqI	TCGA	5 cut(s)	207, 297, 692, 714, 746
TatI	WGTACW	1 cut(s)	789
TauI	GCSGC	3 cut(s)	381, 407, 584
TfiI	GAWTC	1 cut(s)	743
Tru1I	TTAA	3 cut(s)	89, 609, 618
Tru9I	TTAA	3 cut(s)	89, 609, 618
TscAI	CASTG	1 cut(s)	708
TseFI	GTSAC	2 cut(s)	181, 544
Tsp45I	GTSAC	2 cut(s)	181, 544
TspGWI	ACGGA	3 cut(s)	190, 439, 510
TspMI	CCCGGG	1 cut(s)	421
TspRI	CASTG	1 cut(s)	708
Tth111I	GACNNNGTC	2 cut(s)	488, 800
VpaK11BI	GGWCC	3 cut(s)	323, 518, 531
XagI	CCTNNNNNAGG	1 cut(s)	224
XmaI	CCCGGG	1 cut(s)	421
ZraI	GACGTC	1 cut(s)	472
ZrmI	AGTACT	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.