Rroxscaffold_2G00147160

Stress responsive A/B Barrel Domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006564
Physical Location & Seq
Reverse (-)
85113037 .. 85114137
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00147160.1

Sequence Viewer

Length: 378 bp
ATGGCCGTTGACTGGGTCGCGGATGGGTTGACGGGCCCGGTGGGTCCGTCGCCGGGGTCCGCGATCCGGGTCACGTTTTTGAAGTTGAAGGAGGAGCTGGGGGAGGCGGCGAAAGGTGAGATTTTGGAGGTGATTAAAGGGATTAAGGGGAAGTTCGGAGAGGTGGGGCAGATTAGTGTGGGAGAGAACTTCTCGCCGGCGAGGGCTAAAGGGTATTCGATTGCTTCAGTGGCGGTTTTCGAGGGAGTGAGCGAGATGGAGGCCGTGGATTCGAAGGAGGAGCTGGCGAAGCTGGAGAAGGACAAAGTTAGGGAGTACTTGGACAGCGTCATTGTTCTTGATTATGTTGTTCCATCGCCCCAATCTGCAAGTCTCTGA

Protein Analysis

125

Amino Acids

13.23

Weight (kDa)

4.72

Isoelectric Point (pI)

26.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dabb PF07876 23 - 117 1.5e-15 Stress responsive A/B Barrel Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 20, 62
AciI CCGC 4 cut(s) 20, 60, 107, 233
AclWI GGATC 1 cut(s) 58
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 210
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 3 cut(s) 12, 53, 66
AgsI TTSAA 2 cut(s) 82, 88
AluBI AGCT 3 cut(s) 97, 283, 292
AluI AGCT 3 cut(s) 97, 283, 292
AlwI GGATC 1 cut(s) 58
AoxI GGCC 3 cut(s) 3, 34, 261
ApaI GGGCCC 1 cut(s) 38
AspS9I GGNCC 4 cut(s) 34, 35, 44, 57
AsuC2I CCSGG 3 cut(s) 38, 54, 68
AsuHPI GGTGA 2 cut(s) 128, 142
AsuII TTCGAA 1 cut(s) 272
AvaII GGWCC 2 cut(s) 44, 57
BaeGI GKGCMC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 38
BccI CCATC 3 cut(s) 17, 250, 361
BceAI ACGGC 1 cut(s) 248
BcnI CCSGG 3 cut(s) 38, 54, 68
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
BmcAI AGTACT 1 cut(s) 317
Bme1390I CCNGG 3 cut(s) 38, 54, 68
Bme18I GGWCC 2 cut(s) 44, 57
BmgT120I GGNCC 4 cut(s) 34, 35, 44, 57
BmiI GGNNCC 3 cut(s) 36, 45, 58
BmrFI CCNGG 3 cut(s) 38, 54, 68
BmrI ACTGGG 1 cut(s) 22
BmuI ACTGGG 1 cut(s) 22
BplI GAGNNNNNCTC 2 cut(s) 176, 208
BpmI CTGGAG 1 cut(s) 314
Bpu14I TTCGAA 1 cut(s) 272
BpuMI CCSGG 3 cut(s) 38, 54, 68
BsaJI CCNNGG 2 cut(s) 53, 264
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 53, 66
Bse118I RCCGGY 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 17
BseDI CCNNGG 2 cut(s) 53, 264
BseGI GGATG 1 cut(s) 28
BseLI CCNNNNNNNGG 3 cut(s) 12, 53, 66
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 2 cut(s) 107, 293
BseSI GKGCMC 1 cut(s) 38
BseYI CCCAGC 1 cut(s) 97
Bsh1236I CGCG 2 cut(s) 20, 62
BshFI GGCC 3 cut(s) 5, 36, 263
BsiSI CCGG 4 cut(s) 38, 53, 67, 197
BslI CCNNNNNNNGG 3 cut(s) 12, 53, 66
BsnI GGCC 3 cut(s) 5, 36, 263
Bsp119I TTCGAA 1 cut(s) 272
Bsp120I GGGCCC 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 38
Bsp143I GATC 1 cut(s) 63
BspACI CCGC 4 cut(s) 20, 60, 107, 233
BspANI GGCC 3 cut(s) 5, 36, 263
BspFNI CGCG 2 cut(s) 20, 62
BspLI GGNNCC 3 cut(s) 36, 45, 58
BspPI GGATC 1 cut(s) 58
BspT104I TTCGAA 1 cut(s) 272
BsrFI RCCGGY 1 cut(s) 196
BsrI ACTGG 1 cut(s) 17
BssAI RCCGGY 1 cut(s) 196
BssECI CCNNGG 2 cut(s) 53, 264
BssMI GATC 1 cut(s) 63
BstBI TTCGAA 1 cut(s) 272
BstC8I GCNNGC 2 cut(s) 198, 285
BstDSI CCRYGG 1 cut(s) 264
BstF5I GGATG 1 cut(s) 28
BstFNI CGCG 2 cut(s) 20, 62
BstKTI GATC 1 cut(s) 66
BstMBI GATC 1 cut(s) 63
BstMWI GCNNNNNNNGC 2 cut(s) 230, 289
BstSCI CCNGG 3 cut(s) 36, 52, 66
BstSLI GKGCMC 1 cut(s) 38
BstUI CGCG 2 cut(s) 20, 62
BsuRI GGCC 3 cut(s) 5, 36, 263
BtgI CCRYGG 1 cut(s) 264
BtgZI GCGATG 1 cut(s) 339
BtsCI GGATG 1 cut(s) 28
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 2 cut(s) 198, 285
Cfr10I RCCGGY 1 cut(s) 196
Cfr13I GGNCC 4 cut(s) 34, 35, 44, 57
CseI GACGC 1 cut(s) 316
Csp6I GTAC 1 cut(s) 316
CviJI RGCY 7 cut(s) 5, 36, 97, 206, 263, 283, 292
CviKI_1 RGCY 7 cut(s) 5, 36, 97, 206, 263, 283, 292
CviQI GTAC 1 cut(s) 316
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
EaeI YGGCCR 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 38
Eco47I GGWCC 2 cut(s) 44, 57
Eco57I CTGAAG 1 cut(s) 210
EcoT38I GRGCYC 1 cut(s) 38
FaiI YATR 1 cut(s) 345
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 1 cut(s) 35
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 108
GluI GCNGC 1 cut(s) 108
GsaI CCCAGC 1 cut(s) 101
GsuI CTGGAG 1 cut(s) 314
HaeIII GGCC 3 cut(s) 5, 36, 263
HapII CCGG 4 cut(s) 38, 53, 67, 197
HgaI GACGC 1 cut(s) 316
HincII GTYRAC 2 cut(s) 10, 30
HindII GTYRAC 2 cut(s) 10, 30
HinfI GANTC 1 cut(s) 269
HpaII CCGG 4 cut(s) 38, 53, 67, 197
HphI GGTGA 2 cut(s) 128, 142
Hpy166II GTNNAC 2 cut(s) 10, 30
Hpy188I TCNGA 2 cut(s) 158, 377
Hpy188III TCNNGA 1 cut(s) 338
Hpy8I GTNNAC 2 cut(s) 10, 30
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 3 cut(s) 82, 268, 292
HpyCH4IV ACGT 1 cut(s) 74
HpyCH4V TGCA 1 cut(s) 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 289
HpySE526I ACGT 1 cut(s) 74
KroI GCCGGC 1 cut(s) 196
KroNI GCCGGC 1 cut(s) 198
Kzo9I GATC 1 cut(s) 63
LmnI GCTCC 2 cut(s) 94, 280
LpnPI CCDG 7 cut(s) 51, 66, 80, 83, 210, 269, 278
MaeII ACGT 1 cut(s) 74
MaeIII GTNAC 1 cut(s) 70
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MhlI GDGCHC 1 cut(s) 38
MnlI CCTC 8 cut(s) 85, 97, 121, 154, 195, 235, 253, 271
MreI CGCCGGCG 1 cut(s) 196
MroNI GCCGGC 1 cut(s) 196
MseI TTAA 2 cut(s) 135, 144
MspI CCGG 4 cut(s) 38, 53, 67, 197
MspR9I CCNGG 3 cut(s) 38, 54, 68
MvnI CGCG 2 cut(s) 20, 62
MwoI GCNNNNNNNGC 2 cut(s) 230, 289
NaeI GCCGGC 1 cut(s) 198
NciI CCSGG 3 cut(s) 38, 54, 68
NdeII GATC 1 cut(s) 63
NgoMIV GCCGGC 1 cut(s) 196
NlaIV GGNNCC 3 cut(s) 36, 45, 58
NmuCI GTSAC 1 cut(s) 70
NspV TTCGAA 1 cut(s) 272
PdiI GCCGGC 1 cut(s) 198
PfeI GAWTC 1 cut(s) 269
PflFI GACNNNGTC 2 cut(s) 14, 326
PkrI GCNGC 1 cut(s) 109
PspFI CCCAGC 1 cut(s) 97
PspN4I GGNNCC 3 cut(s) 36, 45, 58
PspOMI GGGCCC 1 cut(s) 34
PspPI GGNCC 4 cut(s) 34, 35, 44, 57
PsyI GACNNNGTC 2 cut(s) 14, 326
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SaqAI TTAA 2 cut(s) 135, 144
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 1 cut(s) 63
Sau96I GGNCC 4 cut(s) 34, 35, 44, 57
ScaI AGTACT 1 cut(s) 317
ScrFI CCNGG 3 cut(s) 38, 54, 68
SduI GDGCHC 1 cut(s) 38
SetI ASST 7 cut(s) 77, 99, 118, 132, 165, 285, 294
SfuI TTCGAA 1 cut(s) 272
SgrAI CRCCGGYG 1 cut(s) 196
SinI GGWCC 2 cut(s) 44, 57
SsiI CCGC 4 cut(s) 20, 60, 107, 233
StyD4I CCNGG 3 cut(s) 36, 52, 66
TaiI ACGT 1 cut(s) 77
TaqI TCGA 3 cut(s) 218, 240, 272
TatI WGTACW 1 cut(s) 315
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 2 cut(s) 135, 144
Tru9I TTAA 2 cut(s) 135, 144
TscAI CASTG 1 cut(s) 234
TseFI GTSAC 1 cut(s) 70
Tsp45I GTSAC 1 cut(s) 70
TspGWI ACGGA 1 cut(s) 36
TspRI CASTG 1 cut(s) 234
Tth111I GACNNNGTC 2 cut(s) 14, 326
VpaK11BI GGWCC 2 cut(s) 44, 57
ZrmI AGTACT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.