Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006564

Physical Location & Seq

Genomic Coordinates Forward (+)

7054365 .. 7055168

Gene Structure 804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016490

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGACGGCGACTGTGTGTCTCAAGGCCACTCGCTCCTTCTTAAACCCTCTTCCATTCTCTCGCTCCCTCTCACTTCCCAAACCCCACCACTTCCTCTCTCTCCCCAAAACCCGCATCTCCAATTTCGCCACCGTCACCATGTCGTCATCCTCCGTCGTCGAGCACATCGTCCTCTTCAAGGTCAAAGACGACACCGACCCCTCCAAGGTCAACTCCATGCTCAACGGCCTCAACGGCCTGACCTCCCTCGATCTCACCCTCCACCTCACCGCCGGTCCCCTCCTCCGCACCCGATCCTCCCCCTTCGCCTTCACCCACCTCCTCCACAGCCGCTACAAGACCAAAGACGACCTCGCCGCCTATACCGTCCACCCGGGCCACCTCAGCGTCGTCAAGGAGTCCGTTCTCCCGATCTGCGATGACGTCATGGCCGTTGACTTGGTCGCGGATGGGTTGACGGGCCCCGTGAGTCCGTCGCCGGGGTCCGCGGTCCGGGTCACGTTTTTGAAGTTGAAGGAGGAGCTCGGGGAGGCGGCGAAAGGTGAGATTTTGGAGGTGATTAAAGGGATTAAGGGGAAGTTCGGAGAGGTTGGGCAGATTAGTGTGGGAGAGAACTTCTCGCCGGCAAGGGCTAAAGGGTATTCGATTGCTTCAGTGGCGGTTTTCAATGGAGTGAGCGAGATGGAGGCCGTGGATTCGAAGGAGGAGTTGGCGAAGCTGGAGAAGGACAAAGTTAGGGATTACTTGGACAGCGTCATTGTTCTTGATTTTGTTGTTCCATCGCCCCAATCTGCAAGTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009817 GO:0010033 GO:0042221 GO:0042579 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Dabb

Protein Analysis

268

Amino Acids

28.72

Weight (kDa)

7.1

Isoelectric Point (pI)

34.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dabb	PF07876	53 - 148	3.5e-20	Stress responsive A/B Barrel Domain
Dabb	PF07876	165 - 259	1.4e-14	Stress responsive A/B Barrel Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31670
fragaria_vesca	FvH4_1g08350 FvH4_1g08360
malus_domestica	MD15G1215300.v1.1
prunus_persica	Prupe.7G202000_v2.0.a1
pyrus_communis	pycom15g19100
rosa_chinensis	RchiOBHm_Chr2g0094401
rosa_laevigata	RLG00000016490 RLG00000016491
rosa_multiflora	Rmu_sc0003819.1_g000006 Rmu_sc0003819.1_g000007 Rmu_sc0003819.1_g000008 Rmu_sc0022324.1_g000001 Rmu_sc0022325.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147150 Rroxscaffold_2G00147160
rosa_rugosa	Rorug02G0043900 Rorug02G0044000
rosa_samantha	Rh2AG091900 Rh2AG092000 Rh2BG091900 Rh2BG092000 Rh2CG094400 Rh2CG094500 Rh2DG090700 Rh2DG090800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	426
AccII	CGCG	2 cut(s)	446, 488
AclWI	GGATC	1 cut(s)	288
AcoI	YGGCCR	1 cut(s)	429
AcuI	CTGAAG	1 cut(s)	636
AcyI	GRCGYC	1 cut(s)	423
AfiI	CCNNNNNNNGG	4 cut(s)	178, 205, 479, 492
AgsI	TTSAA	4 cut(s)	178, 508, 514, 667
AhdI	GACNNNNNGTC	1 cut(s)	15
AjuI	GAANNNNNNNTTGG	2 cut(s)	692, 724
AluBI	AGCT	2 cut(s)	523, 718
AluI	AGCT	2 cut(s)	523, 718
Alw21I	GWGCWC	2 cut(s)	165, 525
Alw26I	GTCTC	1 cut(s)	23
AlwI	GGATC	1 cut(s)	288
Ama87I	CYCGRG	2 cut(s)	373, 524
AoxI	GGCC	7 cut(s)	24, 226, 235, 376, 429, 460, 687
ApaI	GGGCCC	1 cut(s)	464
AspS9I	GGNCC	6 cut(s)	275, 376, 460, 461, 483, 490
AsuC2I	CCSGG	4 cut(s)	374, 375, 480, 494
AsuHPI	GGTGA	6 cut(s)	127, 247, 259, 304, 554, 568
AsuII	TTCGAA	1 cut(s)	698
AvaI	CYCGRG	2 cut(s)	373, 524
AvaII	GGWCC	3 cut(s)	275, 483, 490
BaeGI	GKGCMC	1 cut(s)	464
BanII	GRGCYC	2 cut(s)	464, 525
Bbv12I	GWGCWC	2 cut(s)	165, 525
BbvCI	CCTCAGC	1 cut(s)	383
BccI	CCATC	3 cut(s)	443, 676, 787
BceAI	ACGGC	5 cut(s)	21, 241, 250, 416, 674
BcnI	CCSGG	4 cut(s)	374, 375, 480, 494
BcoDI	GTCTC	1 cut(s)	23
BglI	GCCNNNNNGGC	1 cut(s)	234
BisI	GCNGC	3 cut(s)	331, 357, 534
BlsI	GCNGC	3 cut(s)	332, 358, 535
Bme1390I	CCNGG	4 cut(s)	374, 375, 480, 494
Bme18I	GGWCC	3 cut(s)	275, 483, 490
BmeRI	GACNNNNNGTC	1 cut(s)	15
BmeT110I	CYCGRG	2 cut(s)	373, 524
BmgT120I	GGNCC	6 cut(s)	275, 376, 460, 461, 483, 490
BmiI	GGNNCC	4 cut(s)	277, 462, 463, 484
BmrFI	CCNGG	4 cut(s)	374, 375, 480, 494
BmsI	GCATC	1 cut(s)	123
BplI	GAGNNNNNCTC	2 cut(s)	602, 634
BpmI	CTGGAG	1 cut(s)	740
Bpu10I	CCTNAGC	1 cut(s)	383
Bpu14I	TTCGAA	1 cut(s)	698
BpuEI	CTTGAG	1 cut(s)	5
BpuMI	CCSGG	4 cut(s)	374, 375, 480, 494
BsaHI	GRCGYC	1 cut(s)	423
BsaJI	CCNNGG	5 cut(s)	204, 373, 479, 486, 690
Bsc4I	CCNNNNNNNGG	4 cut(s)	178, 205, 479, 492
Bse118I	RCCGGY	2 cut(s)	272, 622
BseDI	CCNNGG	5 cut(s)	204, 373, 479, 486, 690
BseGI	GGATG	2 cut(s)	146, 454
BseLI	CCNNNNNNNGG	4 cut(s)	178, 205, 479, 492
BseMII	CTCAG	1 cut(s)	397
BseRI	GAGGAG	4 cut(s)	272, 311, 533, 719
BseSI	GKGCMC	1 cut(s)	464
Bsh1236I	CGCG	2 cut(s)	446, 488
BshFI	GGCC	7 cut(s)	26, 228, 237, 378, 431, 462, 689
BsiHKAI	GWGCWC	2 cut(s)	165, 525
BsiHKCI	CYCGRG	2 cut(s)	373, 524
BsiSI	CCGG	5 cut(s)	273, 374, 479, 493, 623
BslFI	GGGAC	1 cut(s)	261
BslI	CCNNNNNNNGG	4 cut(s)	178, 205, 479, 492
BsmAI	GTCTC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	261
BsnI	GGCC	7 cut(s)	26, 228, 237, 378, 431, 462, 689
BsoBI	CYCGRG	2 cut(s)	373, 524
Bsp119I	TTCGAA	1 cut(s)	698
Bsp120I	GGGCCC	1 cut(s)	460
Bsp1286I	GDGCHC	3 cut(s)	165, 464, 525
Bsp143I	GATC	3 cut(s)	250, 293, 411
BspANI	GGCC	7 cut(s)	26, 228, 237, 378, 431, 462, 689
BspCNI	CTCAG	1 cut(s)	396
BspFNI	CGCG	2 cut(s)	446, 488
BspLI	GGNNCC	4 cut(s)	277, 462, 463, 484
BspPI	GGATC	1 cut(s)	288
BspT104I	TTCGAA	1 cut(s)	698
BsrFI	RCCGGY	2 cut(s)	272, 622
BssAI	RCCGGY	2 cut(s)	272, 622
BssECI	CCNNGG	5 cut(s)	204, 373, 479, 486, 690
BssMI	GATC	3 cut(s)	250, 293, 411
BssNI	GRCGYC	1 cut(s)	423
BssT1I	CCWWGG	1 cut(s)	204
Bst4CI	ACNGT	3 cut(s)	13, 133, 367
Bst6I	CTCTTC	2 cut(s)	54, 179
BstACI	GRCGYC	1 cut(s)	423
BstBI	TTCGAA	1 cut(s)	698
BstC8I	GCNNGC	1 cut(s)	624
BstDEI	CTNAG	1 cut(s)	383
BstDSI	CCRYGG	2 cut(s)	486, 690
BstENI	CCTNNNNNAGG	1 cut(s)	176
BstF5I	GGATG	2 cut(s)	146, 454
BstFNI	CGCG	2 cut(s)	446, 488
BstKTI	GATC	3 cut(s)	253, 296, 414
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	3 cut(s)	250, 293, 411
BstMWI	GCNNNNNNNGC	3 cut(s)	234, 384, 656
BstSCI	CCNGG	4 cut(s)	372, 373, 478, 492
BstSLI	GKGCMC	1 cut(s)	464
BstUI	CGCG	2 cut(s)	446, 488
BsuRI	GGCC	7 cut(s)	26, 228, 237, 378, 431, 462, 689
BtgI	CCRYGG	2 cut(s)	486, 690
BtgZI	GCGATG	2 cut(s)	432, 765
BtsCI	GGATG	2 cut(s)	146, 454
BtsIMutI	CAGTG	1 cut(s)	660
Cac8I	GCNNGC	1 cut(s)	624
Cfr10I	RCCGGY	2 cut(s)	272, 622
Cfr13I	GGNCC	6 cut(s)	275, 376, 460, 461, 483, 490
Cfr42I	CCGCGG	1 cut(s)	489
Cfr9I	CCCGGG	1 cut(s)	373
CpoI	CGGWCCG	1 cut(s)	490
CseI	GACGC	2 cut(s)	376, 742
CspI	CGGWCCG	1 cut(s)	490
CviAII	CATG	3 cut(s)	139, 217, 427
DdeI	CTNAG	1 cut(s)	383
DpnI	GATC	3 cut(s)	252, 295, 413
DpnII	GATC	3 cut(s)	250, 293, 411
DriI	GACNNNNNGTC	1 cut(s)	15
EaeI	YGGCCR	1 cut(s)	429
Eam1104I	CTCTTC	2 cut(s)	54, 179
Eam1105I	GACNNNNNGTC	1 cut(s)	15
EarI	CTCTTC	2 cut(s)	54, 179
Ecl136II	GAGCTC	1 cut(s)	523
Eco130I	CCWWGG	1 cut(s)	204
Eco24I	GRGCYC	2 cut(s)	464, 525
Eco47I	GGWCC	3 cut(s)	275, 483, 490
Eco53kI	GAGCTC	1 cut(s)	523
Eco57I	CTGAAG	1 cut(s)	636
Eco88I	CYCGRG	2 cut(s)	373, 524
EcoICRI	GAGCTC	1 cut(s)	523
EcoNI	CCTNNNNNAGG	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	461
EcoT14I	CCWWGG	1 cut(s)	204
EcoT38I	GRGCYC	2 cut(s)	464, 525
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	3 cut(s)	142, 220, 430
FaiI	YATR	4 cut(s)	140, 218, 363, 428
FaqI	GGGAC	1 cut(s)	261
FatI	CATG	3 cut(s)	138, 216, 426
FauI	CCCGC	1 cut(s)	119
Fnu4HI	GCNGC	3 cut(s)	331, 357, 534
FokI	GGATG	2 cut(s)	133, 461
FriOI	GRGCYC	2 cut(s)	464, 525
Fsp4HI	GCNGC	3 cut(s)	331, 357, 534
GluI	GCNGC	3 cut(s)	331, 357, 534
GsuI	CTGGAG	1 cut(s)	740
HaeIII	GGCC	7 cut(s)	26, 228, 237, 378, 431, 462, 689
HapII	CCGG	5 cut(s)	273, 374, 479, 493, 623
HgaI	GACGC	2 cut(s)	376, 742
Hin1I	GRCGYC	1 cut(s)	423
Hin1II	CATG	3 cut(s)	142, 220, 430
HincII	GTYRAC	3 cut(s)	211, 436, 456
HindII	GTYRAC	3 cut(s)	211, 436, 456
HinfI	GANTC	3 cut(s)	398, 469, 695
HpaII	CCGG	5 cut(s)	273, 374, 479, 493, 623
HphI	GGTGA	6 cut(s)	127, 247, 259, 304, 554, 568
Hpy166II	GTNNAC	4 cut(s)	211, 370, 436, 456
Hpy188I	TCNGA	2 cut(s)	584, 803
Hpy188III	TCNNGA	2 cut(s)	409, 764
Hpy8I	GTNNAC	4 cut(s)	211, 370, 436, 456
Hpy99I	CGWCG	4 cut(s)	158, 161, 392, 478
HpyAV	CCTTC	6 cut(s)	46, 313, 319, 508, 694, 718
HpyCH4III	ACNGT	3 cut(s)	13, 133, 367
HpyCH4IV	ACGT	2 cut(s)	423, 500
HpyCH4V	TGCA	1 cut(s)	794
HpyF10VI	GCNNNNNNNGC	3 cut(s)	234, 384, 656
HpyF3I	CTNAG	1 cut(s)	383
HpySE526I	ACGT	2 cut(s)	423, 500
Hsp92I	GRCGYC	1 cut(s)	423
Hsp92II	CATG	3 cut(s)	142, 220, 430
KroI	GCCGGC	1 cut(s)	622
KroNI	GCCGGC	1 cut(s)	624
KspI	CCGCGG	1 cut(s)	489
Kzo9I	GATC	3 cut(s)	250, 293, 411
LmnI	GCTCC	3 cut(s)	38, 68, 520
LpnPI	CCDG	7 cut(s)	251, 286, 387, 492, 506, 636, 704
LweI	GCATC	1 cut(s)	123
MaeII	ACGT	2 cut(s)	423, 500
MaeIII	GTNAC	2 cut(s)	133, 496
MalI	GATC	3 cut(s)	252, 295, 413
MboI	GATC	3 cut(s)	250, 293, 411
MboII	GAAGA	2 cut(s)	41, 166
MhlI	GDGCHC	3 cut(s)	165, 464, 525
MluCI	AATT	1 cut(s)	121
MlyI	GAGTC	2 cut(s)	407, 478
MroNI	GCCGGC	1 cut(s)	622
MseI	TTAA	3 cut(s)	41, 561, 570
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	5 cut(s)	273, 374, 479, 493, 623
MspR9I	CCNGG	4 cut(s)	374, 375, 480, 494
MvnI	CGCG	2 cut(s)	446, 488
MwoI	GCNNNNNNNGC	3 cut(s)	234, 384, 656
NaeI	GCCGGC	1 cut(s)	624
NciI	CCSGG	4 cut(s)	374, 375, 480, 494
NdeII	GATC	3 cut(s)	250, 293, 411
NgoMIV	GCCGGC	1 cut(s)	622
NlaIII	CATG	3 cut(s)	142, 220, 430
NlaIV	GGNNCC	4 cut(s)	277, 462, 463, 484
NmuCI	GTSAC	2 cut(s)	133, 496
NspV	TTCGAA	1 cut(s)	698
PcsI	WCGNNNNNNNCGW	2 cut(s)	165, 429
PdiI	GCCGGC	1 cut(s)	624
PfeI	GAWTC	1 cut(s)	695
PflFI	GACNNNGTC	2 cut(s)	440, 752
PkrI	GCNGC	3 cut(s)	332, 358, 535
PleI	GAGTC	2 cut(s)	406, 477
PpsI	GAGTC	2 cut(s)	406, 477
Psp124BI	GAGCTC	1 cut(s)	525
PspN4I	GGNNCC	4 cut(s)	277, 462, 463, 484
PspOMI	GGGCCC	1 cut(s)	460
PspPI	GGNCC	6 cut(s)	275, 376, 460, 461, 483, 490
PsyI	GACNNNGTC	2 cut(s)	440, 752
Rsr2I	CGGWCCG	1 cut(s)	490
RsrII	CGGWCCG	1 cut(s)	490
SacI	GAGCTC	1 cut(s)	525
SacII	CCGCGG	1 cut(s)	489
SaqAI	TTAA	3 cut(s)	41, 561, 570
SatI	GCNGC	3 cut(s)	331, 357, 534
Sau3AI	GATC	3 cut(s)	250, 293, 411
Sau96I	GGNCC	6 cut(s)	275, 376, 460, 461, 483, 490
SchI	GAGTC	2 cut(s)	407, 478
ScrFI	CCNGG	4 cut(s)	374, 375, 480, 494
SduI	GDGCHC	3 cut(s)	165, 464, 525
SfaNI	GCATC	1 cut(s)	123
SfiI	GGCCNNNNNGGCC	1 cut(s)	234
Sfr303I	CCGCGG	1 cut(s)	489
SfuI	TTCGAA	1 cut(s)	698
SgrBI	CCGCGG	1 cut(s)	489
SinI	GGWCC	3 cut(s)	275, 483, 490
SmaI	CCCGGG	1 cut(s)	375
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	1 cut(s)	121
SstI	GAGCTC	1 cut(s)	525
StyD4I	CCNGG	4 cut(s)	372, 373, 478, 492
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	3 cut(s)	13, 133, 367
TaiI	ACGT	2 cut(s)	426, 503
TaqI	TCGA	4 cut(s)	159, 249, 644, 698
TasI	AATT	1 cut(s)	121
TauI	GCSGC	3 cut(s)	333, 359, 536
TfiI	GAWTC	1 cut(s)	695
Tru1I	TTAA	3 cut(s)	41, 561, 570
Tru9I	TTAA	3 cut(s)	41, 561, 570
TscAI	CASTG	1 cut(s)	660
TseFI	GTSAC	2 cut(s)	133, 496
Tsp45I	GTSAC	2 cut(s)	133, 496
TspGWI	ACGGA	3 cut(s)	142, 391, 462
TspMI	CCCGGG	1 cut(s)	373
TspRI	CASTG	1 cut(s)	660
Tth111I	GACNNNGTC	2 cut(s)	440, 752
VpaK11BI	GGWCC	3 cut(s)	275, 483, 490
XagI	CCTNNNNNAGG	1 cut(s)	176
XmaI	CCCGGG	1 cut(s)	373
ZraI	GACGTC	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.