Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006564

Physical Location & Seq

Genomic Coordinates Forward (+)

6996781 .. 6998665

Gene Structure 1885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG090800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTCGTCATCGCCGGCCGCCCAAACCGTCGTCGAGCACATCGTCCTCTTCAAGGTCAAAGACAACGCCGACCCCTCCAAGGTCAACGCATGGGTCAAGGGCCTCAACGGCCTGAGCTCGCTTGATCTTACTCTCCACCTCACCGCCGGTCCCCTCCTCCGCACCCGATCCTCCCCTTTCGCCTTCACCCACCTCCTCCACAGCCGCTACAAGACAAAAGACGACCTCGCCGCCTATACCGTCCACCCGGGCCACATCAGCGTCGTCAAGGATTTAGGCCTCCCTATCTGTGATGACATCATGGCCGTTGACTGGGTCGCGGATGGGCTGACGGGCCCGGTGGCCTTGTCCCCCGGGTCCGCGATCCGGGTCACGGTTTTGAAGTTGAAGGAGGAGTTGGGGGAGGCGGCTAAAGGTGAGGTTTTGGAGGTGATTAAAGGAATTAAGGGGAAGTTGGGCTTGGGAGAGGCGGGGCAGATTAGCGTCGGAGAGAACTTCTCGCCGGGGAGGGCCAGAGGGTATTCGATCGCGTCGGTGGCGGTTTTTAAGGGAGTGAGTGAGATGGAGGAGGTGGAGGAGGTGGAGAAGGACAAGGTTAGGGAGTATTTGGATAGCGTGATTGTTCTCGATTATGTGGTTCCGTCCCTGCAAGTGTCTGAAGATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009817 GO:0010033 GO:0042221 GO:0042579 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Dabb

Protein Analysis

222

Amino Acids

23.74

Weight (kDa)

5.39

Isoelectric Point (pI)

30.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dabb	PF07876	11 - 106	4.9e-19	Stress responsive A/B Barrel Domain
Dabb	PF07876	123 - 213	1.9e-07	Stress responsive A/B Barrel Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31670
fragaria_vesca	FvH4_1g08350 FvH4_1g08360
malus_domestica	MD15G1215300.v1.1
prunus_persica	Prupe.7G202000_v2.0.a1
pyrus_communis	pycom15g19100
rosa_chinensis	RchiOBHm_Chr2g0094401
rosa_laevigata	RLG00000016490 RLG00000016491
rosa_multiflora	Rmu_sc0003819.1_g000006 Rmu_sc0003819.1_g000007 Rmu_sc0003819.1_g000008 Rmu_sc0022324.1_g000001 Rmu_sc0022325.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147150 Rroxscaffold_2G00147160
rosa_rugosa	Rorug02G0043900 Rorug02G0044000
rosa_samantha	Rh2AG091900 Rh2AG092000 Rh2BG091900 Rh2BG092000 Rh2CG094400 Rh2CG094500 Rh2DG090700 Rh2DG090800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	320, 362, 530
AclWI	GGATC	3 cut(s)	162, 358, 656
AcoI	YGGCCR	2 cut(s)	15, 303
AfiI	CCNNNNNNNGG	5 cut(s)	52, 79, 312, 366, 373
AgsI	TTSAA	3 cut(s)	52, 382, 388
AjuI	GAANNNNNNNTTGG	4 cut(s)	380, 412, 443, 475
AluBI	AGCT	1 cut(s)	117
AluI	AGCT	1 cut(s)	117
Alw21I	GWGCWC	2 cut(s)	39, 119
AlwI	GGATC	3 cut(s)	162, 358, 656
Ama87I	CYCGRG	2 cut(s)	247, 353
AoxI	GGCC	9 cut(s)	15, 100, 109, 250, 277, 303, 334, 342, 510
ApaI	GGGCCC	1 cut(s)	338
AspS9I	GGNCC	7 cut(s)	100, 149, 250, 334, 335, 357, 510
AsuC2I	CCSGG	7 cut(s)	248, 249, 338, 354, 355, 368, 504
AsuHPI	GGTGA	4 cut(s)	133, 178, 428, 442
AvaI	CYCGRG	2 cut(s)	247, 353
AvaII	GGWCC	2 cut(s)	149, 357
BaeGI	GKGCMC	1 cut(s)	338
BanII	GRGCYC	2 cut(s)	119, 338
Bbv12I	GWGCWC	2 cut(s)	39, 119
BccI	CCATC	2 cut(s)	317, 556
BceAI	ACGGC	2 cut(s)	124, 290
BcnI	CCSGG	7 cut(s)	248, 249, 338, 354, 355, 368, 504
BglI	GCCNNNNNGGC	1 cut(s)	108
BisI	GCNGC	4 cut(s)	18, 205, 231, 408
BlsI	GCNGC	4 cut(s)	19, 206, 232, 409
Bme1390I	CCNGG	7 cut(s)	248, 249, 338, 354, 355, 368, 504
Bme18I	GGWCC	2 cut(s)	149, 357
BmeT110I	CYCGRG	2 cut(s)	247, 353
BmgT120I	GGNCC	7 cut(s)	100, 149, 250, 334, 335, 357, 510
BmiI	GGNNCC	4 cut(s)	151, 336, 358, 639
BmrFI	CCNGG	7 cut(s)	248, 249, 338, 354, 355, 368, 504
BmrI	ACTGGG	1 cut(s)	322
BmuI	ACTGGG	1 cut(s)	322
BplI	GAGNNNNNCTC	2 cut(s)	482, 514
Bpu10I	CCTNAGC	1 cut(s)	113
BpuMI	CCSGG	7 cut(s)	248, 249, 338, 354, 355, 368, 504
BsaJI	CCNNGG	5 cut(s)	78, 247, 352, 353, 503
Bsc4I	CCNNNNNNNGG	5 cut(s)	52, 79, 312, 366, 373
Bse118I	RCCGGY	2 cut(s)	13, 146
Bse1I	ACTGG	1 cut(s)	317
BseDI	CCNNGG	5 cut(s)	78, 247, 352, 353, 503
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	5 cut(s)	52, 79, 312, 366, 373
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	317
BseRI	GAGGAG	5 cut(s)	146, 185, 407, 581, 590
BseSI	GKGCMC	1 cut(s)	338
BseX3I	CGGCCG	1 cut(s)	15
Bsh1236I	CGCG	3 cut(s)	320, 362, 530
Bsh1285I	CGRYCG	2 cut(s)	18, 528
BshFI	GGCC	9 cut(s)	17, 102, 111, 252, 279, 305, 336, 344, 512
BsiEI	CGRYCG	2 cut(s)	18, 528
BsiHKAI	GWGCWC	2 cut(s)	39, 119
BsiHKCI	CYCGRG	2 cut(s)	247, 353
BsiSI	CCGG	7 cut(s)	14, 147, 248, 338, 354, 367, 503
BslFI	GGGAC	3 cut(s)	135, 334, 628
BslI	CCNNNNNNNGG	5 cut(s)	52, 79, 312, 366, 373
BsmFI	GGGAC	3 cut(s)	135, 334, 628
BsnI	GGCC	9 cut(s)	17, 102, 111, 252, 279, 305, 336, 344, 512
BsoBI	CYCGRG	2 cut(s)	247, 353
Bsp120I	GGGCCC	1 cut(s)	334
Bsp1286I	GDGCHC	3 cut(s)	39, 119, 338
Bsp143I	GATC	5 cut(s)	124, 167, 363, 525, 661
BspANI	GGCC	9 cut(s)	17, 102, 111, 252, 279, 305, 336, 344, 512
BspCNI	CTCAG	1 cut(s)	105
BspFNI	CGCG	3 cut(s)	320, 362, 530
BspLI	GGNNCC	4 cut(s)	151, 336, 358, 639
BspPI	GGATC	3 cut(s)	162, 358, 656
BsrFI	RCCGGY	2 cut(s)	13, 146
BsrI	ACTGG	1 cut(s)	317
BssAI	RCCGGY	2 cut(s)	13, 146
BssECI	CCNNGG	5 cut(s)	78, 247, 352, 353, 503
BssMI	GATC	5 cut(s)	124, 167, 363, 525, 661
BssT1I	CCWWGG	1 cut(s)	78
Bst4CI	ACNGT	3 cut(s)	28, 241, 376
Bst6I	CTCTTC	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	15, 119
BstDEI	CTNAG	1 cut(s)	113
BstENI	CCTNNNNNAGG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	328
BstFNI	CGCG	3 cut(s)	320, 362, 530
BstKTI	GATC	5 cut(s)	127, 170, 366, 528, 664
BstMBI	GATC	5 cut(s)	124, 167, 363, 525, 661
BstMCI	CGRYCG	2 cut(s)	18, 528
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 258, 536
BstSCI	CCNGG	7 cut(s)	246, 247, 336, 352, 353, 366, 502
BstSLI	GKGCMC	1 cut(s)	338
BstUI	CGCG	3 cut(s)	320, 362, 530
BstX2I	RGATCY	1 cut(s)	661
BstYI	RGATCY	1 cut(s)	661
BstZI	CGGCCG	1 cut(s)	15
BsuRI	GGCC	9 cut(s)	17, 102, 111, 252, 279, 305, 336, 344, 512
BtsCI	GGATG	1 cut(s)	328
Cac8I	GCNNGC	2 cut(s)	15, 119
Cfr10I	RCCGGY	2 cut(s)	13, 146
Cfr13I	GGNCC	7 cut(s)	100, 149, 250, 334, 335, 357, 510
Cfr9I	CCCGGG	2 cut(s)	247, 353
CseI	GACGC	3 cut(s)	250, 472, 519
CviAII	CATG	2 cut(s)	90, 301
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	5 cut(s)	126, 169, 365, 527, 663
DpnII	GATC	5 cut(s)	124, 167, 363, 525, 661
EaeI	YGGCCR	2 cut(s)	15, 303
EagI	CGGCCG	1 cut(s)	15
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Ecl136II	GAGCTC	1 cut(s)	117
EclXI	CGGCCG	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	78
Eco147I	AGGCCT	1 cut(s)	279
Eco24I	GRGCYC	2 cut(s)	119, 338
Eco47I	GGWCC	2 cut(s)	149, 357
Eco52I	CGGCCG	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	117
Eco88I	CYCGRG	2 cut(s)	247, 353
EcoICRI	GAGCTC	1 cut(s)	117
EcoNI	CCTNNNNNAGG	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	78
EcoT38I	GRGCYC	2 cut(s)	119, 338
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	2 cut(s)	93, 304
FaiI	YATR	5 cut(s)	91, 237, 302, 633, 667
FalI	AAGNNNNNCTT	2 cut(s)	443, 475
FaqI	GGGAC	3 cut(s)	135, 334, 628
FatI	CATG	2 cut(s)	89, 300
FauI	CCCGC	1 cut(s)	463
Fnu4HI	GCNGC	4 cut(s)	18, 205, 231, 408
FokI	GGATG	1 cut(s)	335
FriOI	GRGCYC	2 cut(s)	119, 338
Fsp4HI	GCNGC	4 cut(s)	18, 205, 231, 408
GluI	GCNGC	4 cut(s)	18, 205, 231, 408
HaeIII	GGCC	9 cut(s)	17, 102, 111, 252, 279, 305, 336, 344, 512
HapII	CCGG	7 cut(s)	14, 147, 248, 338, 354, 367, 503
HgaI	GACGC	3 cut(s)	250, 472, 519
Hin1II	CATG	2 cut(s)	93, 304
HincII	GTYRAC	2 cut(s)	85, 310
HindII	GTYRAC	2 cut(s)	85, 310
HpaII	CCGG	7 cut(s)	14, 147, 248, 338, 354, 367, 503
HphI	GGTGA	4 cut(s)	133, 178, 428, 442
Hpy166II	GTNNAC	3 cut(s)	85, 244, 310
Hpy188I	TCNGA	2 cut(s)	488, 658
Hpy188III	TCNNGA	1 cut(s)	626
Hpy8I	GTNNAC	3 cut(s)	85, 244, 310
Hpy99I	CGWCG	5 cut(s)	32, 35, 266, 488, 535
HpyAV	CCTTC	3 cut(s)	193, 382, 580
HpyCH4III	ACNGT	3 cut(s)	28, 241, 376
HpyCH4V	TGCA	1 cut(s)	649
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 258, 536
HpyF3I	CTNAG	1 cut(s)	113
Hsp92II	CATG	2 cut(s)	93, 304
KroI	GCCGGC	1 cut(s)	13
KroNI	GCCGGC	1 cut(s)	15
Kzo9I	GATC	5 cut(s)	124, 167, 363, 525, 661
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	5 cut(s)	126, 169, 365, 527, 663
MboI	GATC	5 cut(s)	124, 167, 363, 525, 661
MboII	GAAGA	1 cut(s)	40
MflI	RGATCY	1 cut(s)	661
MhlI	GDGCHC	3 cut(s)	39, 119, 338
MluCI	AATT	1 cut(s)	441
MmeI	TCCRAC	1 cut(s)	466
MroNI	GCCGGC	1 cut(s)	13
MseI	TTAA	3 cut(s)	435, 444, 546
MspI	CCGG	7 cut(s)	14, 147, 248, 338, 354, 367, 503
MspR9I	CCNGG	7 cut(s)	248, 249, 338, 354, 355, 368, 504
MvnI	CGCG	3 cut(s)	320, 362, 530
MwoI	GCNNNNNNNGC	3 cut(s)	108, 258, 536
NaeI	GCCGGC	1 cut(s)	15
NciI	CCSGG	7 cut(s)	248, 249, 338, 354, 355, 368, 504
NdeII	GATC	5 cut(s)	124, 167, 363, 525, 661
NgoMIV	GCCGGC	1 cut(s)	13
NlaIII	CATG	2 cut(s)	93, 304
NlaIV	GGNNCC	4 cut(s)	151, 336, 358, 639
NmuCI	GTSAC	1 cut(s)	370
PceI	AGGCCT	1 cut(s)	279
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PdiI	GCCGGC	1 cut(s)	15
PflFI	GACNNNGTC	1 cut(s)	314
PkrI	GCNGC	4 cut(s)	19, 206, 232, 409
Ple19I	CGATCG	1 cut(s)	528
Psp124BI	GAGCTC	1 cut(s)	119
PspN4I	GGNNCC	4 cut(s)	151, 336, 358, 639
PspOMI	GGGCCC	1 cut(s)	334
PspPI	GGNCC	7 cut(s)	100, 149, 250, 334, 335, 357, 510
PsuI	RGATCY	1 cut(s)	661
PsyI	GACNNNGTC	1 cut(s)	314
PvuI	CGATCG	1 cut(s)	528
SacI	GAGCTC	1 cut(s)	119
SaqAI	TTAA	3 cut(s)	435, 444, 546
SatI	GCNGC	4 cut(s)	18, 205, 231, 408
Sau3AI	GATC	5 cut(s)	124, 167, 363, 525, 661
Sau96I	GGNCC	7 cut(s)	100, 149, 250, 334, 335, 357, 510
ScrFI	CCNGG	7 cut(s)	248, 249, 338, 354, 355, 368, 504
SduI	GDGCHC	3 cut(s)	39, 119, 338
SfiI	GGCCNNNNNGGCC	1 cut(s)	108
SinI	GGWCC	2 cut(s)	149, 357
SmaI	CCCGGG	2 cut(s)	249, 355
Sse9I	AATT	1 cut(s)	441
SseBI	AGGCCT	1 cut(s)	279
SstI	GAGCTC	1 cut(s)	119
StuI	AGGCCT	1 cut(s)	279
StyD4I	CCNGG	7 cut(s)	246, 247, 336, 352, 353, 366, 502
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	3 cut(s)	28, 241, 376
TaqI	TCGA	3 cut(s)	33, 524, 627
TasI	AATT	1 cut(s)	441
TauI	GCSGC	4 cut(s)	20, 207, 233, 410
Tru1I	TTAA	3 cut(s)	435, 444, 546
Tru9I	TTAA	3 cut(s)	435, 444, 546
TseFI	GTSAC	1 cut(s)	370
Tsp45I	GTSAC	1 cut(s)	370
TspGWI	ACGGA	1 cut(s)	630
TspMI	CCCGGG	2 cut(s)	247, 353
Tth111I	GACNNNGTC	1 cut(s)	314
VpaK11BI	GGWCC	2 cut(s)	149, 357
XagI	CCTNNNNNAGG	1 cut(s)	50
XmaI	CCCGGG	2 cut(s)	247, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.