Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006564

Physical Location & Seq

Genomic Coordinates Forward (+)

4414264 .. 4415275

Gene Structure 1012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g08350.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGACGGCGACTCTGTGTCTCAAAGCCACTCGCTCCTTCCTAAACCCTCGCCCCTTCTCTCGCTCCCTCTCACCTCCCAAACCCCACCGCCACCTCCTCTCTTTCCCCAAAACCCTCGTCACCGTCACCATGTCGTCATCCCCCGTCGTCGTCGAGCACGTCGTCCTCTTCAACGTCAAACCCGACACCGACCCCTCCAAGGTCAACTCCATGGTCAACGGCCTCAACAACCTCACCTCCCTCGATCTCACCCTCCACCTCACCGCCGGTCCTCTCCTCCGCACCCGCTCCTCCCCCTTCGCCTTCACCCACCTCCTCCACAGCCGCTACAGCTCCAAAGACTCCCTCGCCGCCTACTCCGCCCACCCCGGTCACCTCAGCGTCGTCAAGGAGTCAGTTCTCCCGATCTGCGATGACGTCATGGCCGTTGACTGGGTCGCCGACGGGCTGACTGGTCCGGTGGGGTTGGCCCCCGGGTCGGCGATCCGGGTCACGTTTTTGAAGGTGAAGGAGGGCTTGGATGAGGCGGCGAAGGGTGAGATTTTGGAGGTGATTAAAGGGATTAAGGGGAAGTTTGGAGAGGTGGGGCAGATTAGCGTTGGTGAGAACTTCTCCCCGGCAAGGGCTAAAGGGTATTCGATTGCGTCTGTGGCGGTTTTCAAGGGAGTGAGTGAGATGGAGGCTGTGGATTCGAAAGAGGAGCTTGCGAAGCTGGAGAAGGACAAGGTTAGGGAGTATTTGGAGAGTGTTATTGTTCTTGATTACGTTGTTCCTTCGCCGCAATCTGCTAGTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009817 GO:0010033 GO:0042221 GO:0042579 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Dabb

Protein Analysis

266

Amino Acids

28.5

Weight (kDa)

8.43

Isoelectric Point (pI)

35.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dabb	PF07876	51 - 146	1.7e-18	Stress responsive A/B Barrel Domain
Dabb	PF07876	163 - 257	1.7e-14	Stress responsive A/B Barrel Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31670
fragaria_vesca	FvH4_1g08350 FvH4_1g08360
malus_domestica	MD15G1215300.v1.1
prunus_persica	Prupe.7G202000_v2.0.a1
pyrus_communis	pycom15g19100
rosa_chinensis	RchiOBHm_Chr2g0094401
rosa_laevigata	RLG00000016490 RLG00000016491
rosa_multiflora	Rmu_sc0003819.1_g000006 Rmu_sc0003819.1_g000007 Rmu_sc0003819.1_g000008 Rmu_sc0022324.1_g000001 Rmu_sc0022325.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147150 Rroxscaffold_2G00147160
rosa_rugosa	Rorug02G0043900 Rorug02G0044000
rosa_samantha	Rh2AG091900 Rh2AG092000 Rh2BG091900 Rh2BG092000 Rh2CG094400 Rh2CG094500 Rh2DG090700 Rh2DG090800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	420
AccBSI	CCGCTC	1 cut(s)	288
AclWI	GGATC	1 cut(s)	478
AcoI	YGGCCR	1 cut(s)	423
AcyI	GRCGYC	1 cut(s)	417
AfiI	CCNNNNNNNGG	5 cut(s)	199, 432, 478, 621, 622
AgsI	TTSAA	3 cut(s)	172, 502, 661
AhdI	GACNNNNNGTC	1 cut(s)	15
AjiI	CACGTC	1 cut(s)	160
AjuI	GAANNNNNNNTTGG	2 cut(s)	500, 532
AluBI	AGCT	3 cut(s)	333, 703, 712
AluI	AGCT	3 cut(s)	333, 703, 712
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	1 cut(s)	23
AlwI	GGATC	1 cut(s)	478
Ama87I	CYCGRG	1 cut(s)	473
AoxI	GGCC	3 cut(s)	220, 423, 468
ArsI	GACNNNNNNTTYG	2 cut(s)	102, 134
AspS9I	GGNCC	3 cut(s)	269, 455, 469
AsuC2I	CCSGG	5 cut(s)	369, 474, 475, 488, 617
AsuII	TTCGAA	1 cut(s)	692
AvaI	CYCGRG	1 cut(s)	473
AvaII	GGWCC	2 cut(s)	269, 455
Bbv12I	GWGCWC	1 cut(s)	159
BbvCI	CCTCAGC	1 cut(s)	377
BccI	CCATC	1 cut(s)	670
BceAI	ACGGC	3 cut(s)	21, 235, 410
BcnI	CCSGG	5 cut(s)	369, 474, 475, 488, 617
BcoDI	GTCTC	1 cut(s)	23
BfaI	CTAG	1 cut(s)	789
BfmI	CTRYAG	1 cut(s)	328
BisI	GCNGC	4 cut(s)	325, 351, 528, 779
BlsI	GCNGC	4 cut(s)	326, 352, 529, 780
Bme1390I	CCNGG	5 cut(s)	369, 474, 475, 488, 617
Bme18I	GGWCC	2 cut(s)	269, 455
BmeRI	GACNNNNNGTC	1 cut(s)	15
BmeT110I	CYCGRG	1 cut(s)	473
BmgBI	CACGTC	1 cut(s)	160
BmgT120I	GGNCC	3 cut(s)	269, 455, 469
BmiI	GGNNCC	1 cut(s)	471
BmrFI	CCNGG	5 cut(s)	369, 474, 475, 488, 617
BmrI	ACTGGG	1 cut(s)	442
BmuI	ACTGGG	1 cut(s)	442
BplI	GAGNNNNNCTC	2 cut(s)	596, 628
BpmI	CTGGAG	1 cut(s)	734
Bpu10I	CCTNAGC	1 cut(s)	377
Bpu14I	TTCGAA	1 cut(s)	692
BpuMI	CCSGG	5 cut(s)	369, 474, 475, 488, 617
BsaHI	GRCGYC	1 cut(s)	417
BsaJI	CCNNGG	6 cut(s)	198, 210, 367, 472, 473, 615
BsaWI	WCCGGW	1 cut(s)	457
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	5 cut(s)	199, 432, 478, 621, 622
Bse118I	RCCGGY	1 cut(s)	266
Bse1I	ACTGG	2 cut(s)	437, 457
BseDI	CCNNGG	6 cut(s)	198, 210, 367, 472, 473, 615
BseGI	GGATG	2 cut(s)	137, 526
BseLI	CCNNNNNNNGG	5 cut(s)	199, 432, 478, 621, 622
BseMII	CTCAG	1 cut(s)	391
BseNI	ACTGG	2 cut(s)	437, 457
BseRI	GAGGAG	5 cut(s)	86, 266, 280, 305, 713
BshFI	GGCC	3 cut(s)	222, 425, 470
BsiHKAI	GWGCWC	1 cut(s)	159
BsiHKCI	CYCGRG	1 cut(s)	473
BsiSI	CCGG	6 cut(s)	267, 369, 458, 474, 487, 617
BslI	CCNNNNNNNGG	5 cut(s)	199, 432, 478, 621, 622
BsmAI	GTCTC	1 cut(s)	23
BsnI	GGCC	3 cut(s)	222, 425, 470
BsoBI	CYCGRG	1 cut(s)	473
Bsp119I	TTCGAA	1 cut(s)	692
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	3 cut(s)	244, 405, 483
Bsp19I	CCATGG	1 cut(s)	210
BspANI	GGCC	3 cut(s)	222, 425, 470
BspCNI	CTCAG	1 cut(s)	390
BspLI	GGNNCC	1 cut(s)	471
BspPI	GGATC	1 cut(s)	478
BspT104I	TTCGAA	1 cut(s)	692
BsrBI	CCGCTC	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	266
BsrI	ACTGG	2 cut(s)	437, 457
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	6 cut(s)	198, 210, 367, 472, 473, 615
BssMI	GATC	3 cut(s)	244, 405, 483
BssNI	GRCGYC	1 cut(s)	417
BssT1I	CCWWGG	2 cut(s)	198, 210
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	1 cut(s)	173
BstACI	GRCGYC	1 cut(s)	417
BstBI	TTCGAA	1 cut(s)	692
BstC8I	GCNNGC	1 cut(s)	705
BstDEI	CTNAG	1 cut(s)	377
BstDSI	CCRYGG	1 cut(s)	210
BstEII	GGTNACC	1 cut(s)	371
BstF5I	GGATG	2 cut(s)	137, 526
BstKTI	GATC	3 cut(s)	247, 408, 486
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	3 cut(s)	244, 405, 483
BstMWI	GCNNNNNNNGC	4 cut(s)	330, 359, 650, 709
BstPI	GGTNACC	1 cut(s)	371
BstSCI	CCNGG	5 cut(s)	367, 472, 473, 486, 615
BstSFI	CTRYAG	1 cut(s)	328
BsuRI	GGCC	3 cut(s)	222, 425, 470
BtgI	CCRYGG	1 cut(s)	210
BtgZI	GCGATG	1 cut(s)	426
BtrI	CACGTC	1 cut(s)	160
BtsCI	GGATG	2 cut(s)	137, 526
Cac8I	GCNNGC	1 cut(s)	705
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	3 cut(s)	269, 455, 469
Cfr9I	CCCGGG	1 cut(s)	473
CseI	GACGC	2 cut(s)	370, 633
CviAII	CATG	3 cut(s)	130, 211, 421
DdeI	CTNAG	1 cut(s)	377
DpnI	GATC	3 cut(s)	246, 407, 485
DpnII	GATC	3 cut(s)	244, 405, 483
DriI	GACNNNNNGTC	1 cut(s)	15
EaeI	YGGCCR	1 cut(s)	423
Eam1104I	CTCTTC	1 cut(s)	173
Eam1105I	GACNNNNNGTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	173
EciI	GGCGGA	1 cut(s)	349
Eco130I	CCWWGG	2 cut(s)	198, 210
Eco47I	GGWCC	2 cut(s)	269, 455
Eco88I	CYCGRG	1 cut(s)	473
Eco91I	GGTNACC	1 cut(s)	371
EcoO65I	GGTNACC	1 cut(s)	371
EcoT14I	CCWWGG	2 cut(s)	198, 210
ErhI	CCWWGG	2 cut(s)	198, 210
FaeI	CATG	3 cut(s)	133, 214, 424
FaiI	YATR	3 cut(s)	131, 212, 422
FalI	AAGNNNNNCTT	4 cut(s)	500, 532, 687, 719
FatI	CATG	3 cut(s)	129, 210, 420
FauI	CCCGC	1 cut(s)	293
Fnu4HI	GCNGC	4 cut(s)	325, 351, 528, 779
FokI	GGATG	2 cut(s)	124, 533
Fsp4HI	GCNGC	4 cut(s)	325, 351, 528, 779
FspBI	CTAG	1 cut(s)	789
GluI	GCNGC	4 cut(s)	325, 351, 528, 779
GsuI	CTGGAG	1 cut(s)	734
HaeIII	GGCC	3 cut(s)	222, 425, 470
HapII	CCGG	6 cut(s)	267, 369, 458, 474, 487, 617
HgaI	GACGC	2 cut(s)	370, 633
Hin1I	GRCGYC	1 cut(s)	417
Hin1II	CATG	3 cut(s)	133, 214, 424
HincII	GTYRAC	3 cut(s)	205, 217, 430
HindII	GTYRAC	3 cut(s)	205, 217, 430
HinfI	GANTC	4 cut(s)	10, 341, 392, 689
HpaII	CCGG	6 cut(s)	267, 369, 458, 474, 487, 617
Hpy166II	GTNNAC	3 cut(s)	205, 217, 430
Hpy188I	TCNGA	1 cut(s)	797
Hpy188III	TCNNGA	2 cut(s)	403, 758
Hpy8I	GTNNAC	3 cut(s)	205, 217, 430
Hpy99I	CGWCG	6 cut(s)	149, 152, 155, 164, 386, 446
HpyAV	CCTTC	9 cut(s)	46, 64, 307, 313, 496, 502, 526, 712, 783
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	5 cut(s)	159, 174, 417, 494, 765
HpyF10VI	GCNNNNNNNGC	4 cut(s)	330, 359, 650, 709
HpyF3I	CTNAG	1 cut(s)	377
HpySE526I	ACGT	5 cut(s)	159, 174, 417, 494, 765
Hsp92I	GRCGYC	1 cut(s)	417
Hsp92II	CATG	3 cut(s)	133, 214, 424
Kzo9I	GATC	3 cut(s)	244, 405, 483
LmnI	GCTCC	5 cut(s)	38, 68, 293, 338, 700
LpnPI	CCDG	9 cut(s)	280, 382, 418, 438, 471, 487, 500, 630, 698
MaeI	CTAG	1 cut(s)	789
MaeII	ACGT	5 cut(s)	159, 174, 417, 494, 765
MaeIII	GTNAC	4 cut(s)	118, 124, 371, 490
MalI	GATC	3 cut(s)	246, 407, 485
MbiI	CCGCTC	1 cut(s)	288
MboI	GATC	3 cut(s)	244, 405, 483
MboII	GAAGA	1 cut(s)	160
MhlI	GDGCHC	1 cut(s)	159
MlyI	GAGTC	3 cut(s)	4, 335, 401
MseI	TTAA	2 cut(s)	555, 564
MspI	CCGG	6 cut(s)	267, 369, 458, 474, 487, 617
MspR9I	CCNGG	5 cut(s)	369, 474, 475, 488, 617
MwoI	GCNNNNNNNGC	4 cut(s)	330, 359, 650, 709
NciI	CCSGG	5 cut(s)	369, 474, 475, 488, 617
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	3 cut(s)	244, 405, 483
NlaIII	CATG	3 cut(s)	133, 214, 424
NlaIV	GGNNCC	1 cut(s)	471
NmuCI	GTSAC	4 cut(s)	118, 124, 371, 490
NspV	TTCGAA	1 cut(s)	692
PcsI	WCGNNNNNNNCGW	4 cut(s)	156, 159, 180, 423
PfeI	GAWTC	1 cut(s)	689
PflFI	GACNNNGTC	1 cut(s)	434
PkrI	GCNGC	4 cut(s)	326, 352, 529, 780
PleI	GAGTC	3 cut(s)	4, 335, 400
PpsI	GAGTC	3 cut(s)	4, 335, 400
PspEI	GGTNACC	1 cut(s)	371
PspN4I	GGNNCC	1 cut(s)	471
PspPI	GGNCC	3 cut(s)	269, 455, 469
PsyI	GACNNNGTC	1 cut(s)	434
SaqAI	TTAA	2 cut(s)	555, 564
SatI	GCNGC	4 cut(s)	325, 351, 528, 779
Sau3AI	GATC	3 cut(s)	244, 405, 483
Sau96I	GGNCC	3 cut(s)	269, 455, 469
SchI	GAGTC	3 cut(s)	4, 335, 401
ScrFI	CCNGG	5 cut(s)	369, 474, 475, 488, 617
SduI	GDGCHC	1 cut(s)	159
SfcI	CTRYAG	1 cut(s)	328
SfuI	TTCGAA	1 cut(s)	692
SinI	GGWCC	2 cut(s)	269, 455
SmaI	CCCGGG	1 cut(s)	475
SspMI	CTAG	1 cut(s)	789
StyD4I	CCNGG	5 cut(s)	367, 472, 473, 486, 615
StyI	CCWWGG	2 cut(s)	198, 210
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	5 cut(s)	162, 177, 420, 497, 768
TaqI	TCGA	4 cut(s)	153, 243, 638, 692
TauI	GCSGC	4 cut(s)	327, 353, 530, 781
TfiI	GAWTC	1 cut(s)	689
Tru1I	TTAA	2 cut(s)	555, 564
Tru9I	TTAA	2 cut(s)	555, 564
TseFI	GTSAC	4 cut(s)	118, 124, 371, 490
Tsp45I	GTSAC	4 cut(s)	118, 124, 371, 490
TspMI	CCCGGG	1 cut(s)	473
Tth111I	GACNNNGTC	1 cut(s)	434
VpaK11BI	GGWCC	2 cut(s)	269, 455
XmaI	CCCGGG	1 cut(s)	473
XspI	CTAG	1 cut(s)	789
ZraI	GACGTC	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.