Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006564

Physical Location & Seq

Genomic Coordinates Reverse (-)

85111061 .. 85112311

Gene Structure 1251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00147150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTCGTCATCGCCGGCCGCCCAAACAGTCGTCGAGCACATCGTCCTCTTCAAGGTCAAAGACAACGCCGACCCCTCCAAGGTCAACGCATGGGTCAACGGCCTCAACGGCCTGAGCTCGCTTGATCTTACTCTCCACCTCACCGCCGGTCCCCTCCTCCGCACCCGATCGTCCCCTTTCGCCTTCACCCACCTCCTCCACAGCCGCTACAAGACAAAAGACGACCTCGCCGCCTATACGGTCCACCCGGGCCACATCCGCGTCGTGGATTTAGGCCTCCCTATCTTTGATGACATCATGGCCGTTGACTGGGTCGCGGATGGGCTGACGGGCCCGGTGACCTTGTCCCCCGGGTCCGCGATCCGGGTCACGGTTTTGAAGTTGAAGGAGGAGTTGGGGGAGGCGGCTAAAGGTGAGGTTTTGGAGGTGATTAAAGGAATTAAGGGGAAGTTGGGAGAGGCGGGGCAGATTAGCGTCGGAGAGAACTTCTCGCCGGGGAGGGCCAGAGGGTATTCGATCGCGTCGGTGGCGGTTTTTAAGGGAGTGAGCGAGATGGAGGAGGTGGATTCGAAGCAGGAGATGGAGGAGGTGGAGAAGGACAAGGTTGGGGAGTTTTTGGATAGCGTGATTGTTCTTGATTATGTGGTTCCGTCCCTGCAAGTGTCTGAAGATACATTATCGGATTCCGGTAATTCAAACTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009817 GO:0010033 GO:0042221 GO:0042579 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Dabb

Protein Analysis

234

Amino Acids

25.12

Weight (kDa)

4.98

Isoelectric Point (pI)

29.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dabb	PF07876	11 - 105	7.3e-19	Stress responsive A/B Barrel Domain
Dabb	PF07876	122 - 216	5.1e-13	Stress responsive A/B Barrel Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31670
fragaria_vesca	FvH4_1g08350 FvH4_1g08360
malus_domestica	MD15G1215300.v1.1
prunus_persica	Prupe.7G202000_v2.0.a1
pyrus_communis	pycom15g19100
rosa_chinensis	RchiOBHm_Chr2g0094401
rosa_laevigata	RLG00000016490 RLG00000016491
rosa_multiflora	Rmu_sc0003819.1_g000006 Rmu_sc0003819.1_g000007 Rmu_sc0003819.1_g000008 Rmu_sc0022324.1_g000001 Rmu_sc0022325.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147150 Rroxscaffold_2G00147160
rosa_rugosa	Rorug02G0043900 Rorug02G0044000
rosa_samantha	Rh2AG091900 Rh2AG092000 Rh2BG091900 Rh2BG092000 Rh2CG094400 Rh2CG094500 Rh2DG090700 Rh2DG090800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	261, 317, 359, 521
AclWI	GGATC	1 cut(s)	355
AcoI	YGGCCR	2 cut(s)	15, 300
AcuI	CTGAAG	1 cut(s)	687
AfiI	CCNNNNNNNGG	6 cut(s)	52, 79, 265, 309, 363, 370
AgsI	TTSAA	4 cut(s)	52, 379, 385, 696
AjuI	GAANNNNNNNTTGG	2 cut(s)	377, 409
AluBI	AGCT	1 cut(s)	117
AluI	AGCT	1 cut(s)	117
Alw21I	GWGCWC	2 cut(s)	39, 119
AlwI	GGATC	1 cut(s)	355
Ama87I	CYCGRG	2 cut(s)	247, 350
AoxI	GGCC	8 cut(s)	15, 100, 109, 250, 274, 300, 331, 501
ApaI	GGGCCC	1 cut(s)	335
AspS9I	GGNCC	7 cut(s)	149, 241, 250, 331, 332, 354, 501
AsuC2I	CCSGG	7 cut(s)	248, 249, 335, 351, 352, 365, 495
AsuHPI	GGTGA	5 cut(s)	133, 178, 349, 425, 439
AsuII	TTCGAA	1 cut(s)	569
AvaI	CYCGRG	2 cut(s)	247, 350
AvaII	GGWCC	3 cut(s)	149, 241, 354
BaeGI	GKGCMC	1 cut(s)	335
BanII	GRGCYC	2 cut(s)	119, 335
Bbv12I	GWGCWC	2 cut(s)	39, 119
BccI	CCATC	3 cut(s)	314, 547, 574
BceAI	ACGGC	3 cut(s)	115, 124, 287
BcnI	CCSGG	7 cut(s)	248, 249, 335, 351, 352, 365, 495
BglI	GCCNNNNNGGC	1 cut(s)	108
BisI	GCNGC	4 cut(s)	18, 205, 231, 405
BlsI	GCNGC	4 cut(s)	19, 206, 232, 406
Bme1390I	CCNGG	7 cut(s)	248, 249, 335, 351, 352, 365, 495
Bme18I	GGWCC	3 cut(s)	149, 241, 354
BmeT110I	CYCGRG	2 cut(s)	247, 350
BmgT120I	GGNCC	7 cut(s)	149, 241, 250, 331, 332, 354, 501
BmiI	GGNNCC	4 cut(s)	151, 333, 355, 648
BmrFI	CCNGG	7 cut(s)	248, 249, 335, 351, 352, 365, 495
BmrI	ACTGGG	1 cut(s)	319
BmuI	ACTGGG	1 cut(s)	319
BplI	GAGNNNNNCTC	2 cut(s)	473, 505
Bpu10I	CCTNAGC	1 cut(s)	113
Bpu14I	TTCGAA	1 cut(s)	569
BpuMI	CCSGG	7 cut(s)	248, 249, 335, 351, 352, 365, 495
BsaJI	CCNNGG	5 cut(s)	78, 247, 349, 350, 494
BsaWI	WCCGGW	1 cut(s)	686
Bsc4I	CCNNNNNNNGG	6 cut(s)	52, 79, 265, 309, 363, 370
Bse118I	RCCGGY	2 cut(s)	13, 146
Bse1I	ACTGG	1 cut(s)	314
BseDI	CCNNGG	5 cut(s)	78, 247, 349, 350, 494
BseGI	GGATG	2 cut(s)	255, 325
BseLI	CCNNNNNNNGG	6 cut(s)	52, 79, 265, 309, 363, 370
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	5 cut(s)	146, 185, 404, 572, 599
BseSI	GKGCMC	1 cut(s)	335
BseX3I	CGGCCG	1 cut(s)	15
Bsh1236I	CGCG	4 cut(s)	261, 317, 359, 521
Bsh1285I	CGRYCG	3 cut(s)	18, 170, 519
BshFI	GGCC	8 cut(s)	17, 102, 111, 252, 276, 302, 333, 503
BsiEI	CGRYCG	3 cut(s)	18, 170, 519
BsiHKAI	GWGCWC	2 cut(s)	39, 119
BsiHKCI	CYCGRG	2 cut(s)	247, 350
BsiSI	CCGG	8 cut(s)	14, 147, 248, 335, 351, 364, 494, 687
BslFI	GGGAC	4 cut(s)	135, 157, 331, 637
BslI	CCNNNNNNNGG	6 cut(s)	52, 79, 265, 309, 363, 370
BsmFI	GGGAC	4 cut(s)	135, 157, 331, 637
BsnI	GGCC	8 cut(s)	17, 102, 111, 252, 276, 302, 333, 503
BsoBI	CYCGRG	2 cut(s)	247, 350
Bsp119I	TTCGAA	1 cut(s)	569
Bsp120I	GGGCCC	1 cut(s)	331
Bsp1286I	GDGCHC	3 cut(s)	39, 119, 335
Bsp143I	GATC	4 cut(s)	124, 167, 360, 516
BspANI	GGCC	8 cut(s)	17, 102, 111, 252, 276, 302, 333, 503
BspCNI	CTCAG	1 cut(s)	105
BspFNI	CGCG	4 cut(s)	261, 317, 359, 521
BspLI	GGNNCC	4 cut(s)	151, 333, 355, 648
BspPI	GGATC	1 cut(s)	355
BspT104I	TTCGAA	1 cut(s)	569
BsrFI	RCCGGY	2 cut(s)	13, 146
BsrI	ACTGG	1 cut(s)	314
BssAI	RCCGGY	2 cut(s)	13, 146
BssECI	CCNNGG	5 cut(s)	78, 247, 349, 350, 494
BssMI	GATC	4 cut(s)	124, 167, 360, 516
BssT1I	CCWWGG	1 cut(s)	78
Bst4CI	ACNGT	3 cut(s)	28, 241, 373
Bst6I	CTCTTC	1 cut(s)	53
BstBI	TTCGAA	1 cut(s)	569
BstC8I	GCNNGC	2 cut(s)	15, 119
BstDEI	CTNAG	1 cut(s)	113
BstEII	GGTNACC	1 cut(s)	337
BstENI	CCTNNNNNAGG	1 cut(s)	50
BstF5I	GGATG	2 cut(s)	255, 325
BstFNI	CGCG	4 cut(s)	261, 317, 359, 521
BstKTI	GATC	4 cut(s)	127, 170, 363, 519
BstMBI	GATC	4 cut(s)	124, 167, 360, 516
BstMCI	CGRYCG	3 cut(s)	18, 170, 519
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 258, 527
BstPI	GGTNACC	1 cut(s)	337
BstSCI	CCNGG	7 cut(s)	246, 247, 333, 349, 350, 363, 493
BstSLI	GKGCMC	1 cut(s)	335
BstUI	CGCG	4 cut(s)	261, 317, 359, 521
BstZI	CGGCCG	1 cut(s)	15
BsuRI	GGCC	8 cut(s)	17, 102, 111, 252, 276, 302, 333, 503
BtsCI	GGATG	2 cut(s)	255, 325
Cac8I	GCNNGC	2 cut(s)	15, 119
Cfr10I	RCCGGY	2 cut(s)	13, 146
Cfr13I	GGNCC	7 cut(s)	149, 241, 250, 331, 332, 354, 501
Cfr9I	CCCGGG	2 cut(s)	247, 350
CseI	GACGC	3 cut(s)	250, 463, 510
CviAII	CATG	2 cut(s)	90, 298
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	4 cut(s)	126, 169, 362, 518
DpnII	GATC	4 cut(s)	124, 167, 360, 516
EaeI	YGGCCR	2 cut(s)	15, 300
EagI	CGGCCG	1 cut(s)	15
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Ecl136II	GAGCTC	1 cut(s)	117
EclXI	CGGCCG	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	78
Eco147I	AGGCCT	1 cut(s)	276
Eco24I	GRGCYC	2 cut(s)	119, 335
Eco47I	GGWCC	3 cut(s)	149, 241, 354
Eco52I	CGGCCG	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	687
Eco88I	CYCGRG	2 cut(s)	247, 350
Eco91I	GGTNACC	1 cut(s)	337
EcoICRI	GAGCTC	1 cut(s)	117
EcoNI	CCTNNNNNAGG	1 cut(s)	50
EcoO65I	GGTNACC	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	78
EcoT38I	GRGCYC	2 cut(s)	119, 335
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	2 cut(s)	93, 301
FaiI	YATR	4 cut(s)	91, 237, 299, 642
FaqI	GGGAC	4 cut(s)	135, 157, 331, 637
FatI	CATG	2 cut(s)	89, 297
FauI	CCCGC	1 cut(s)	454
Fnu4HI	GCNGC	4 cut(s)	18, 205, 231, 405
FokI	GGATG	2 cut(s)	242, 332
FriOI	GRGCYC	2 cut(s)	119, 335
Fsp4HI	GCNGC	4 cut(s)	18, 205, 231, 405
GluI	GCNGC	4 cut(s)	18, 205, 231, 405
HaeIII	GGCC	8 cut(s)	17, 102, 111, 252, 276, 302, 333, 503
HapII	CCGG	8 cut(s)	14, 147, 248, 335, 351, 364, 494, 687
HgaI	GACGC	3 cut(s)	250, 463, 510
Hin1II	CATG	2 cut(s)	93, 301
HincII	GTYRAC	3 cut(s)	85, 97, 307
HindII	GTYRAC	3 cut(s)	85, 97, 307
HinfI	GANTC	2 cut(s)	566, 683
HpaII	CCGG	8 cut(s)	14, 147, 248, 335, 351, 364, 494, 687
HphI	GGTGA	5 cut(s)	133, 178, 349, 425, 439
Hpy166II	GTNNAC	4 cut(s)	85, 97, 244, 307
Hpy188I	TCNGA	3 cut(s)	479, 667, 682
Hpy188III	TCNNGA	1 cut(s)	635
Hpy8I	GTNNAC	4 cut(s)	85, 97, 244, 307
Hpy99I	CGWCG	4 cut(s)	35, 266, 479, 526
HpyAV	CCTTC	3 cut(s)	193, 379, 589
HpyCH4III	ACNGT	3 cut(s)	28, 241, 373
HpyCH4V	TGCA	1 cut(s)	658
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 258, 527
HpyF3I	CTNAG	1 cut(s)	113
Hsp92II	CATG	2 cut(s)	93, 301
KroI	GCCGGC	1 cut(s)	13
KroNI	GCCGGC	1 cut(s)	15
Kzo9I	GATC	4 cut(s)	124, 167, 360, 516
MaeIII	GTNAC	2 cut(s)	337, 367
MalI	GATC	4 cut(s)	126, 169, 362, 518
MboI	GATC	4 cut(s)	124, 167, 360, 516
MboII	GAAGA	2 cut(s)	40, 680
MhlI	GDGCHC	3 cut(s)	39, 119, 335
MluCI	AATT	2 cut(s)	438, 691
MmeI	TCCRAC	1 cut(s)	457
MroNI	GCCGGC	1 cut(s)	13
MseI	TTAA	4 cut(s)	432, 441, 537, 703
MspI	CCGG	8 cut(s)	14, 147, 248, 335, 351, 364, 494, 687
MspR9I	CCNGG	7 cut(s)	248, 249, 335, 351, 352, 365, 495
MvnI	CGCG	4 cut(s)	261, 317, 359, 521
MwoI	GCNNNNNNNGC	3 cut(s)	108, 258, 527
NaeI	GCCGGC	1 cut(s)	15
NciI	CCSGG	7 cut(s)	248, 249, 335, 351, 352, 365, 495
NdeII	GATC	4 cut(s)	124, 167, 360, 516
NgoMIV	GCCGGC	1 cut(s)	13
NlaIII	CATG	2 cut(s)	93, 301
NlaIV	GGNNCC	4 cut(s)	151, 333, 355, 648
NmuCI	GTSAC	2 cut(s)	337, 367
NspV	TTCGAA	1 cut(s)	569
PceI	AGGCCT	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PdiI	GCCGGC	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	566, 683
PflFI	GACNNNGTC	2 cut(s)	311, 343
PkrI	GCNGC	4 cut(s)	19, 206, 232, 406
Ple19I	CGATCG	2 cut(s)	170, 519
Psp124BI	GAGCTC	1 cut(s)	119
PspEI	GGTNACC	1 cut(s)	337
PspN4I	GGNNCC	4 cut(s)	151, 333, 355, 648
PspOMI	GGGCCC	1 cut(s)	331
PspPI	GGNCC	7 cut(s)	149, 241, 250, 331, 332, 354, 501
PsyI	GACNNNGTC	2 cut(s)	311, 343
PvuI	CGATCG	2 cut(s)	170, 519
SacI	GAGCTC	1 cut(s)	119
SaqAI	TTAA	4 cut(s)	432, 441, 537, 703
SatI	GCNGC	4 cut(s)	18, 205, 231, 405
Sau3AI	GATC	4 cut(s)	124, 167, 360, 516
Sau96I	GGNCC	7 cut(s)	149, 241, 250, 331, 332, 354, 501
ScrFI	CCNGG	7 cut(s)	248, 249, 335, 351, 352, 365, 495
SduI	GDGCHC	3 cut(s)	39, 119, 335
SfiI	GGCCNNNNNGGCC	1 cut(s)	108
SfuI	TTCGAA	1 cut(s)	569
SinI	GGWCC	3 cut(s)	149, 241, 354
SmaI	CCCGGG	2 cut(s)	249, 352
Sse9I	AATT	2 cut(s)	438, 691
SseBI	AGGCCT	1 cut(s)	276
SstI	GAGCTC	1 cut(s)	119
StuI	AGGCCT	1 cut(s)	276
StyD4I	CCNGG	7 cut(s)	246, 247, 333, 349, 350, 363, 493
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	3 cut(s)	28, 241, 373
TaqI	TCGA	3 cut(s)	33, 515, 569
TasI	AATT	2 cut(s)	438, 691
TauI	GCSGC	4 cut(s)	20, 207, 233, 407
TfiI	GAWTC	2 cut(s)	566, 683
Tru1I	TTAA	4 cut(s)	432, 441, 537, 703
Tru9I	TTAA	4 cut(s)	432, 441, 537, 703
TseFI	GTSAC	2 cut(s)	337, 367
Tsp45I	GTSAC	2 cut(s)	337, 367
TspGWI	ACGGA	1 cut(s)	639
TspMI	CCCGGG	2 cut(s)	247, 350
Tth111I	GACNNNGTC	2 cut(s)	311, 343
VpaK11BI	GGWCC	3 cut(s)	149, 241, 354
XagI	CCTNNNNNAGG	1 cut(s)	50
XmaI	CCCGGG	2 cut(s)	247, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.