Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006564

Physical Location & Seq

Genomic Coordinates Forward (+)

4416285 .. 4416956

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g08360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTCGTCGTCGTCGGCCGCCCAATCCGTCGTCGAGCACATAGTCCTCTTCAAGCTGAAAGACAACACCGACCCCTCCAAGGTCAACGCCTGGGTCGACGGCCTCAACGCCCTGAGCTCACTCGGCCTCACCCTCCACCTAACCGCCGGCGCCCTCCTCCGCATCCGATCCTCCCCCTTCGCCTTCACCCACCTCCTCCACAGCCGCTACAAATCCAAGGACGACCTCGCCGCCTATGCCGTCCATCCCACCCACATCAGCGTCGTCAAGGAAGGCCTCCCGTTTTGCGATGACATCATGGCCGTTGACTGGATTGCGGATGGGCTGACAGGCCCGGTGGGCCTCTCTCCGGCATCCGCGATCCGCGTCACGGTTTTGAAGCTGAAGGAGTTGGGGGAGGCGGCAAAAGGTGAGGTTTTGGAGGCGATTAAAGGGATCAAGGGGAAGTTCGGCGAGGTGGGTCAGGTCACAATCGGAGAGAACTTCTCGCCGGGCAGAGCCAAAGGGTATTCGATTGCGTCGGTGGCGGTTTTTAAGGGAGTGAAGGAGATGGAGGAGGTGGATTCCAAGGAGGAGCTGGCAAAGCCTGAGAAGGACAAGGTAACGGAGTATTTGGATAACGTGATTGTTGTTGATTATGTGGTTCCGTCACCGCAATCTGCAAGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009817 GO:0010033 GO:0042221 GO:0042579 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Dabb

Protein Analysis

224

Amino Acids

23.8

Weight (kDa)

5.88

Isoelectric Point (pI)

32.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dabb	PF07876	11 - 105	1.8e-20	Stress responsive A/B Barrel Domain
Dabb	PF07876	122 - 215	5.3e-11	Stress responsive A/B Barrel Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31670
fragaria_vesca	FvH4_1g08350 FvH4_1g08360
malus_domestica	MD15G1215300.v1.1
prunus_persica	Prupe.7G202000_v2.0.a1
pyrus_communis	pycom15g19100
rosa_chinensis	RchiOBHm_Chr2g0094401
rosa_laevigata	RLG00000016490 RLG00000016491
rosa_multiflora	Rmu_sc0003819.1_g000006 Rmu_sc0003819.1_g000007 Rmu_sc0003819.1_g000008 Rmu_sc0022324.1_g000001 Rmu_sc0022325.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147150 Rroxscaffold_2G00147160
rosa_rugosa	Rorug02G0043900 Rorug02G0044000
rosa_samantha	Rh2AG091900 Rh2AG092000 Rh2BG091900 Rh2BG092000 Rh2CG094400 Rh2CG094500 Rh2DG090700 Rh2DG090800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AccI	GTMKAC	1 cut(s)	96
AccII	CGCG	2 cut(s)	359, 366
AclWI	GGATC	3 cut(s)	162, 355, 443
AcoI	YGGCCR	2 cut(s)	15, 300
AcuI	CTGAAG	1 cut(s)	404
AcyI	GRCGYC	1 cut(s)	150
AfiI	CCNNNNNNNGG	4 cut(s)	79, 309, 349, 370
AgsI	TTSAA	2 cut(s)	52, 379
AjnI	CCWGG	1 cut(s)	89
AluBI	AGCT	4 cut(s)	55, 117, 382, 577
AluI	AGCT	4 cut(s)	55, 117, 382, 577
Alw21I	GWGCWC	2 cut(s)	39, 119
AlwI	GGATC	3 cut(s)	162, 355, 443
AoxI	GGCC	7 cut(s)	15, 100, 124, 274, 300, 331, 340
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	2 cut(s)	332, 340
AsuC2I	CCSGG	2 cut(s)	335, 492
AsuHPI	GGTGA	4 cut(s)	121, 178, 422, 642
BanI	GGYRCC	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	119
Bbv12I	GWGCWC	2 cut(s)	39, 119
BccI	CCATC	3 cut(s)	252, 314, 544
BceAI	ACGGC	3 cut(s)	115, 224, 287
BciT130I	CCWGG	1 cut(s)	91
BcnI	CCSGG	2 cut(s)	335, 492
BfoI	RGCGCY	1 cut(s)	153
BglI	GCCNNNNNGGC	1 cut(s)	339
BisI	GCNGC	4 cut(s)	18, 205, 231, 402
BlsI	GCNGC	4 cut(s)	19, 206, 232, 403
Bme1390I	CCNGG	3 cut(s)	91, 335, 492
BmgT120I	GGNCC	2 cut(s)	332, 340
BmiI	GGNNCC	2 cut(s)	151, 645
BmrFI	CCNGG	3 cut(s)	91, 335, 492
BmsI	GCATC	2 cut(s)	171, 362
BplI	GAGNNNNNCTC	2 cut(s)	470, 502
Bpu10I	CCTNAGC	1 cut(s)	113
BpuMI	CCSGG	2 cut(s)	335, 492
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	4 cut(s)	78, 90, 216, 567
Bsc4I	CCNNNNNNNGG	4 cut(s)	79, 309, 349, 370
Bse118I	RCCGGY	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	314
BseBI	CCWGG	1 cut(s)	91
BseDI	CCNNGG	4 cut(s)	78, 90, 216, 567
BseGI	GGATG	4 cut(s)	162, 244, 325, 353
BseLI	CCNNNNNNNGG	4 cut(s)	79, 309, 349, 370
BseMII	CTCAG	2 cut(s)	104, 579
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	4 cut(s)	146, 185, 569, 587
BseX3I	CGGCCG	1 cut(s)	15
Bsh1236I	CGCG	2 cut(s)	359, 366
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	7 cut(s)	17, 102, 126, 276, 302, 333, 342
BshNI	GGYRCC	1 cut(s)	149
BsiEI	CGRYCG	1 cut(s)	18
BsiHKAI	GWGCWC	2 cut(s)	39, 119
BsiSI	CCGG	4 cut(s)	147, 335, 350, 491
BslI	CCNNNNNNNGG	4 cut(s)	79, 309, 349, 370
BsnI	GGCC	7 cut(s)	17, 102, 126, 276, 302, 333, 342
Bsp1286I	GDGCHC	2 cut(s)	39, 119
Bsp143I	GATC	3 cut(s)	167, 360, 435
BspANI	GGCC	7 cut(s)	17, 102, 126, 276, 302, 333, 342
BspCNI	CTCAG	2 cut(s)	105, 580
BspFNI	CGCG	2 cut(s)	359, 366
BspLI	GGNNCC	2 cut(s)	151, 645
BspPI	GGATC	3 cut(s)	162, 355, 443
BspT107I	GGYRCC	1 cut(s)	149
BsrFI	RCCGGY	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	314
BssAI	RCCGGY	1 cut(s)	146
BssECI	CCNNGG	4 cut(s)	78, 90, 216, 567
BssMI	GATC	3 cut(s)	167, 360, 435
BssNI	GRCGYC	1 cut(s)	150
BssT1I	CCWWGG	3 cut(s)	78, 216, 567
Bst2UI	CCWGG	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	373
Bst6I	CTCTTC	1 cut(s)	53
BstACI	GRCGYC	1 cut(s)	150
BstC8I	GCNNGC	2 cut(s)	148, 579
BstDEI	CTNAG	2 cut(s)	113, 588
BstF5I	GGATG	4 cut(s)	162, 244, 325, 353
BstFNI	CGCG	2 cut(s)	359, 366
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	3 cut(s)	170, 363, 438
BstMBI	GATC	3 cut(s)	167, 360, 435
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	5 cut(s)	123, 236, 339, 524, 583
BstNI	CCWGG	1 cut(s)	91
BstSCI	CCNGG	3 cut(s)	89, 333, 490
BstUI	CGCG	2 cut(s)	359, 366
BstZI	CGGCCG	1 cut(s)	15
BsuRI	GGCC	7 cut(s)	17, 102, 126, 276, 302, 333, 342
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	4 cut(s)	162, 244, 325, 353
Cac8I	GCNNGC	2 cut(s)	148, 579
CfoI	GCGC	1 cut(s)	152
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	2 cut(s)	332, 340
CseI	GACGC	3 cut(s)	250, 355, 507
CviAII	CATG	1 cut(s)	298
DdeI	CTNAG	2 cut(s)	113, 588
DinI	GGCGCC	1 cut(s)	151
DpnI	GATC	3 cut(s)	169, 362, 437
DpnII	GATC	3 cut(s)	167, 360, 435
EaeI	YGGCCR	2 cut(s)	15, 300
EagI	CGGCCG	1 cut(s)	15
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Ecl136II	GAGCTC	1 cut(s)	117
EclXI	CGGCCG	1 cut(s)	15
Eco130I	CCWWGG	3 cut(s)	78, 216, 567
Eco147I	AGGCCT	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	119
Eco52I	CGGCCG	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	404
EcoICRI	GAGCTC	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	89
EcoT14I	CCWWGG	3 cut(s)	78, 216, 567
EcoT38I	GRGCYC	1 cut(s)	119
EgeI	GGCGCC	1 cut(s)	151
EheI	GGCGCC	1 cut(s)	151
ErhI	CCWWGG	3 cut(s)	78, 216, 567
FaeI	CATG	1 cut(s)	301
FaiI	YATR	4 cut(s)	41, 237, 299, 639
FatI	CATG	1 cut(s)	297
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	4 cut(s)	18, 205, 231, 402
FokI	GGATG	4 cut(s)	149, 231, 332, 340
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	4 cut(s)	18, 205, 231, 402
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	4 cut(s)	18, 205, 231, 402
HaeII	RGCGCY	1 cut(s)	153
HaeIII	GGCC	7 cut(s)	17, 102, 126, 276, 302, 333, 342
HapII	CCGG	4 cut(s)	147, 335, 350, 491
HgaI	GACGC	3 cut(s)	250, 355, 507
HhaI	GCGC	1 cut(s)	152
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	1 cut(s)	301
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HincII	GTYRAC	3 cut(s)	85, 97, 307
HindII	GTYRAC	3 cut(s)	85, 97, 307
HinfI	GANTC	1 cut(s)	563
HpaII	CCGG	4 cut(s)	147, 335, 350, 491
HphI	GGTGA	4 cut(s)	121, 178, 422, 642
Hpy166II	GTNNAC	3 cut(s)	85, 97, 307
Hpy188I	TCNGA	3 cut(s)	167, 476, 671
Hpy8I	GTNNAC	3 cut(s)	85, 97, 307
Hpy99I	CGWCG	8 cut(s)	10, 13, 16, 32, 35, 101, 266, 523
HpyAV	CCTTC	6 cut(s)	187, 193, 266, 379, 538, 586
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4IV	ACGT	1 cut(s)	621
HpyCH4V	TGCA	1 cut(s)	662
HpyF10VI	GCNNNNNNNGC	5 cut(s)	123, 236, 339, 524, 583
HpyF3I	CTNAG	2 cut(s)	113, 588
HpySE526I	ACGT	1 cut(s)	621
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	301
HspAI	GCGC	1 cut(s)	150
KasI	GGCGCC	1 cut(s)	149
KroI	GCCGGC	1 cut(s)	146
KroNI	GCCGGC	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	167, 360, 435
LmnI	GCTCC	1 cut(s)	574
LweI	GCATC	2 cut(s)	171, 362
MaeII	ACGT	1 cut(s)	621
MaeIII	GTNAC	4 cut(s)	367, 466, 601, 648
MalI	GATC	3 cut(s)	169, 362, 437
MboI	GATC	3 cut(s)	167, 360, 435
MboII	GAAGA	1 cut(s)	40
MhlI	GDGCHC	2 cut(s)	39, 119
Mly113I	GGCGCC	1 cut(s)	150
MreI	CGCCGGCG	1 cut(s)	146
MroNI	GCCGGC	1 cut(s)	146
MseI	TTAA	2 cut(s)	429, 534
MspI	CCGG	4 cut(s)	147, 335, 350, 491
MspR9I	CCNGG	3 cut(s)	91, 335, 492
MvaI	CCWGG	1 cut(s)	91
MvnI	CGCG	2 cut(s)	359, 366
MwoI	GCNNNNNNNGC	5 cut(s)	123, 236, 339, 524, 583
NaeI	GCCGGC	1 cut(s)	148
NarI	GGCGCC	1 cut(s)	150
NciI	CCSGG	2 cut(s)	335, 492
NdeII	GATC	3 cut(s)	167, 360, 435
NgoMIV	GCCGGC	1 cut(s)	146
NlaIII	CATG	1 cut(s)	301
NlaIV	GGNNCC	2 cut(s)	151, 645
NmeAIII	GCCGAG	1 cut(s)	102
NmuCI	GTSAC	3 cut(s)	367, 466, 648
PceI	AGGCCT	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PdiI	GCCGGC	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	563
PkrI	GCNGC	4 cut(s)	19, 206, 232, 403
PluTI	GGCGCC	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	89
PspN4I	GGNNCC	2 cut(s)	151, 645
PspPI	GGNCC	2 cut(s)	332, 340
SacI	GAGCTC	1 cut(s)	119
SalI	GTCGAC	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	429, 534
SatI	GCNGC	4 cut(s)	18, 205, 231, 402
Sau3AI	GATC	3 cut(s)	167, 360, 435
Sau96I	GGNCC	2 cut(s)	332, 340
ScrFI	CCNGG	3 cut(s)	91, 335, 492
SduI	GDGCHC	2 cut(s)	39, 119
SfaNI	GCATC	2 cut(s)	171, 362
SfiI	GGCCNNNNNGGCC	1 cut(s)	339
SfoI	GGCGCC	1 cut(s)	151
SgrAI	CRCCGGYG	1 cut(s)	146
SseBI	AGGCCT	1 cut(s)	276
SspDI	GGCGCC	1 cut(s)	149
SstI	GAGCTC	1 cut(s)	119
StuI	AGGCCT	1 cut(s)	276
StyD4I	CCNGG	3 cut(s)	89, 333, 490
StyI	CCWWGG	3 cut(s)	78, 216, 567
TaaI	ACNGT	1 cut(s)	373
TaiI	ACGT	1 cut(s)	624
TaqI	TCGA	3 cut(s)	33, 96, 512
TauI	GCSGC	4 cut(s)	20, 207, 233, 404
TfiI	GAWTC	1 cut(s)	563
Tru1I	TTAA	2 cut(s)	429, 534
Tru9I	TTAA	2 cut(s)	429, 534
TseFI	GTSAC	3 cut(s)	367, 466, 648
Tsp45I	GTSAC	3 cut(s)	367, 466, 648
TspGWI	ACGGA	3 cut(s)	16, 620, 636
XcmI	CCANNNNNNNNNTGG	1 cut(s)	574
XmiI	GTMKAC	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.