Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006564

Physical Location & Seq

Genomic Coordinates Forward (+)

3437313 .. 3439175

Gene Structure 1863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0043900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGATTCACATCTAATCCAGCCGTTGATCGCGTTCCTAATCTCGACCTTCGTGGCCGCCCGAGCCTACCGCCGGAAATCACTCGACTTTTCCGGCGCAATCGCCGGCCTCGCGGTTATGACTCTTCACATTGCAGTGGGATACAGGTACGGAGCTGTGTTGCTCGTCTTCTTTTTCACCTCGTCCAAGCTCACCAAGGTTGGTGAAGACAAGAAGCGTAGAGTTGACCCTGAATTCAAAGAAGGCGGTCAACGGAATTGGATACAGGTTCTATCGAATGCAGGGATTTCCTCTGTTTTGGTTGTGGTGCTTTGGACGCTGACGGGTTTGGAAGACAAATGCTTGGACTCGAAGGAATCGGTACTTGTTACTGCACTGATGGGTGGGGTTATAGGACACTACGCTTGCTGCAATGGAGACACTTGGTCTTCTGAGCTTGGAATTCTTAGTGATGATCAGCCTCGGCTAATCACAACCTTCAAGCCTGTGCGGAAAGGTACCAATGGCGGAGTTACTAAAGCAGGATTACTGGCAGCTGCTGCAGCAGGCTCTGTTATCGGACTGGCGTTTGTGCTTGTTGGCTTTCTCACTACAAAATGTACATATGATGTAGCACTGAAGCAGCTGTTTGTAATACCTCTTTCTACTATTGCTGGACTTTTTGGTAGTGTCATTGATTCTCTTTTGGGAGCAACACTGCAATTCAGTGGATTCTGCACTGTTCGTAACAAGGTTGTTGGGAAACCAGGACCTACTGTCAAGAAGATATCGGGTCTCAATTTTCTTGACAACAATGCTGTGAATGCTGTATCAATCCTGATAACAACAATCATCACTTCCATTGCCTGCATTTACGTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009817 GO:0010033 GO:0042221 GO:0042579 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Dabb

Protein Analysis

287

Amino Acids

30.53

Weight (kDa)

9.32

Isoelectric Point (pI)

26.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF92	PF01940	14 - 275	2.9e-79	Integral membrane protein DUF92

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31670
fragaria_vesca	FvH4_1g08350 FvH4_1g08360
malus_domestica	MD15G1215300.v1.1
prunus_persica	Prupe.7G202000_v2.0.a1
pyrus_communis	pycom15g19100
rosa_chinensis	RchiOBHm_Chr2g0094401
rosa_laevigata	RLG00000016490 RLG00000016491
rosa_multiflora	Rmu_sc0003819.1_g000006 Rmu_sc0003819.1_g000007 Rmu_sc0003819.1_g000008 Rmu_sc0022324.1_g000001 Rmu_sc0022325.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147150 Rroxscaffold_2G00147160
rosa_rugosa	Rorug02G0043900 Rorug02G0044000
rosa_samantha	Rh2AG091900 Rh2AG092000 Rh2BG091900 Rh2BG092000 Rh2CG094400 Rh2CG094500 Rh2DG090700 Rh2DG090800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	497
AccB1I	GGYRCC	1 cut(s)	497
AccII	CGCG	2 cut(s)	32, 113
AciI	CCGC	6 cut(s)	57, 70, 113, 246, 490, 507
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	2 cut(s)	233, 441
AcuI	CTGAAG	1 cut(s)	638
AfaI	GTAC	4 cut(s)	149, 363, 499, 601
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	2 cut(s)	238, 481
AhdI	GACNNNNNGTC	2 cut(s)	424, 755
AjnI	CCWGG	1 cut(s)	745
AluBI	AGCT	5 cut(s)	155, 190, 436, 536, 625
AluI	AGCT	5 cut(s)	155, 190, 436, 536, 625
Alw26I	GTCTC	2 cut(s)	411, 779
AlwNI	CAGNNNCTG	2 cut(s)	539, 551
Ama87I	CYCGRG	1 cut(s)	60
AoxI	GGCC	2 cut(s)	54, 106
ApeKI	GCWGC	6 cut(s)	408, 533, 536, 539, 542, 622
ApoI	RAATTY	2 cut(s)	233, 441
Asp718I	GGTACC	1 cut(s)	497
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	749
AsuHPI	GGTGA	3 cut(s)	169, 184, 215
AvaI	CYCGRG	1 cut(s)	60
AvaII	GGWCC	1 cut(s)	749
BanI	GGYRCC	1 cut(s)	497
BbsI	GAAGAC	4 cut(s)	160, 213, 339, 420
BbvI	GCAGC	6 cut(s)	395, 523, 526, 545, 554, 634
BccI	CCATC	1 cut(s)	373
BceAI	ACGGC	1 cut(s)	7
BciT130I	CCWGG	1 cut(s)	747
BciVI	GTATCC	2 cut(s)	134, 255
BclI	TGATCA	1 cut(s)	454
BcoDI	GTCTC	2 cut(s)	411, 779
BfmI	CTRYAG	1 cut(s)	540
BfuI	GTATCC	2 cut(s)	134, 255
BisI	GCNGC	7 cut(s)	57, 409, 534, 537, 540, 543, 623
BlsI	GCNGC	7 cut(s)	58, 410, 535, 538, 541, 544, 624
Bme1390I	CCNGG	1 cut(s)	747
Bme18I	GGWCC	1 cut(s)	749
BmeRI	GACNNNNNGTC	2 cut(s)	424, 755
BmeT110I	CYCGRG	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	749
BmiI	GGNNCC	1 cut(s)	499
BmrFI	CCNGG	1 cut(s)	747
BpiI	GAAGAC	4 cut(s)	160, 213, 339, 420
BsaBI	GATNNNNATC	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	779
BsaJI	CCNNGG	2 cut(s)	195, 461
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	2 cut(s)	534, 567
Bse3DI	GCAATG	3 cut(s)	129, 418, 840
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	747
BseDI	CCNNGG	2 cut(s)	195, 461
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMI	GCAATG	3 cut(s)	129, 418, 840
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	2 cut(s)	534, 567
BseXI	GCAGC	6 cut(s)	395, 523, 526, 545, 554, 634
BsgI	GTGCAG	2 cut(s)	357, 700
Bsh1236I	CGCG	2 cut(s)	32, 113
BshFI	GGCC	2 cut(s)	56, 108
BshNI	GGYRCC	1 cut(s)	497
BsiHKCI	CYCGRG	1 cut(s)	60
BsiSI	CCGG	3 cut(s)	73, 93, 105
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmAI	GTCTC	2 cut(s)	411, 779
BsmI	GAATGC	2 cut(s)	283, 808
BsnI	GGCC	2 cut(s)	56, 108
Bso31I	GGTCTC	1 cut(s)	779
BsoBI	CYCGRG	1 cut(s)	60
Bsp1407I	TGTACA	1 cut(s)	599
Bsp143I	GATC	2 cut(s)	27, 454
BspACI	CCGC	6 cut(s)	57, 70, 113, 246, 490, 507
BspANI	GGCC	2 cut(s)	56, 108
BspCNI	CTCAG	1 cut(s)	424
BspFNI	CGCG	2 cut(s)	32, 113
BspLI	GGNNCC	1 cut(s)	499
BspMAI	CTGCAG	1 cut(s)	544
BspT107I	GGYRCC	1 cut(s)	497
BspTNI	GGTCTC	1 cut(s)	779
BsrDI	GCAATG	3 cut(s)	129, 418, 840
BsrFI	RCCGGY	1 cut(s)	104
BsrGI	TGTACA	1 cut(s)	599
BsrI	ACTGG	2 cut(s)	534, 567
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	2 cut(s)	195, 461
BssMI	GATC	2 cut(s)	27, 454
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	747
Bst4CI	ACNGT	2 cut(s)	721, 757
Bst6I	CTCTTC	1 cut(s)	129
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstAUI	TGTACA	1 cut(s)	599
BstC8I	GCNNGC	4 cut(s)	106, 406, 547, 847
BstDEI	CTNAG	2 cut(s)	432, 446
BstFNI	CGCG	2 cut(s)	32, 113
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	2 cut(s)	30, 457
BstMAI	GTCTC	2 cut(s)	411, 779
BstMBI	GATC	2 cut(s)	27, 454
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 110, 316, 539, 542, 803
BstNI	CCWGG	1 cut(s)	747
BstSCI	CCNGG	1 cut(s)	745
BstSFI	CTRYAG	1 cut(s)	540
BstUI	CGCG	2 cut(s)	32, 113
BstV1I	GCAGC	6 cut(s)	395, 523, 526, 545, 554, 634
BstV2I	GAAGAC	4 cut(s)	160, 213, 339, 420
BsuI	GTATCC	2 cut(s)	134, 255
BsuRI	GGCC	2 cut(s)	56, 108
BtsI	GCAGTG	2 cut(s)	141, 695
BtsIMutI	CAGTG	6 cut(s)	141, 374, 614, 695, 712, 717
Cac8I	GCNNGC	4 cut(s)	106, 406, 547, 847
CaiI	CAGNNNCTG	2 cut(s)	539, 551
CfoI	GCGC	1 cut(s)	98
Cfr10I	RCCGGY	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	749
CseI	GACGC	1 cut(s)	325
Csp6I	GTAC	4 cut(s)	148, 362, 498, 600
CviQI	GTAC	4 cut(s)	148, 362, 498, 600
DdeI	CTNAG	2 cut(s)	432, 446
DpnI	GATC	2 cut(s)	29, 456
DpnII	GATC	2 cut(s)	27, 454
DriI	GACNNNNNGTC	2 cut(s)	424, 755
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	129
Eam1105I	GACNNNNNGTC	2 cut(s)	424, 755
EarI	CTCTTC	1 cut(s)	129
EciI	GGCGGA	1 cut(s)	522
Eco130I	CCWWGG	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	779
Eco32I	GATATC	1 cut(s)	768
Eco47I	GGWCC	1 cut(s)	749
Eco57I	CTGAAG	1 cut(s)	638
Eco88I	CYCGRG	1 cut(s)	60
EcoO109I	RGGNCCY	1 cut(s)	749
EcoRI	GAATTC	2 cut(s)	233, 441
EcoRII	CCWGG	1 cut(s)	745
EcoRV	GATATC	1 cut(s)	768
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
FaiI	YATR	4 cut(s)	119, 392, 604, 606
FauNDI	CATATG	1 cut(s)	604
FbaI	TGATCA	1 cut(s)	454
Fnu4HI	GCNGC	7 cut(s)	57, 409, 534, 537, 540, 543, 623
Fsp4HI	GCNGC	7 cut(s)	57, 409, 534, 537, 540, 543, 623
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	7 cut(s)	57, 409, 534, 537, 540, 543, 623
HaeIII	GGCC	2 cut(s)	56, 108
HapII	CCGG	3 cut(s)	73, 93, 105
HgaI	GACGC	1 cut(s)	325
HhaI	GCGC	1 cut(s)	98
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HincII	GTYRAC	2 cut(s)	226, 251
HindII	GTYRAC	2 cut(s)	226, 251
HinfI	GANTC	6 cut(s)	5, 121, 347, 356, 677, 711
HpaII	CCGG	3 cut(s)	73, 93, 105
HphI	GGTGA	3 cut(s)	169, 184, 215
Hpy166II	GTNNAC	2 cut(s)	226, 251
Hpy188I	TCNGA	2 cut(s)	433, 560
Hpy188III	TCNNGA	4 cut(s)	43, 760, 785, 817
Hpy8I	GTNNAC	2 cut(s)	226, 251
HpyAV	CCTTC	4 cut(s)	58, 236, 346, 487
HpyCH4III	ACNGT	2 cut(s)	721, 757
HpyCH4IV	ACGT	1 cut(s)	855
HpyCH4V	TGCA	8 cut(s)	134, 281, 374, 411, 542, 700, 717, 849
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 110, 316, 539, 542, 803
HpyF3I	CTNAG	2 cut(s)	432, 446
HpySE526I	ACGT	1 cut(s)	855
HspAI	GCGC	1 cut(s)	96
KpnI	GGTACC	1 cut(s)	501
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	2 cut(s)	27, 454
LmnI	GCTCC	2 cut(s)	152, 689
Lsp1109I	GCAGC	6 cut(s)	395, 523, 526, 545, 554, 634
MaeII	ACGT	1 cut(s)	855
MaeIII	GTNAC	3 cut(s)	367, 511, 725
MalI	GATC	2 cut(s)	29, 456
MboI	GATC	2 cut(s)	27, 454
MboII	GAAGA	6 cut(s)	116, 160, 218, 344, 420, 775
MluCI	AATT	5 cut(s)	233, 256, 441, 701, 778
MlyI	GAGTC	2 cut(s)	115, 341
MnlI	CCTC	5 cut(s)	119, 190, 301, 471, 648
MroNI	GCCGGC	1 cut(s)	104
MslI	CAYNNNNRTG	1 cut(s)	134
MspA1I	CMGCKG	2 cut(s)	536, 625
MspI	CCGG	3 cut(s)	73, 93, 105
MspR9I	CCNGG	1 cut(s)	747
Mva1269I	GAATGC	2 cut(s)	283, 808
MvaI	CCWGG	1 cut(s)	747
MvnI	CGCG	2 cut(s)	32, 113
MwoI	GCNNNNNNNGC	6 cut(s)	62, 110, 316, 539, 542, 803
NaeI	GCCGGC	1 cut(s)	106
NdeI	CATATG	1 cut(s)	604
NdeII	GATC	2 cut(s)	27, 454
NgoMIV	GCCGGC	1 cut(s)	104
NlaIV	GGNNCC	1 cut(s)	499
NmeAIII	GCCGAG	1 cut(s)	442
PctI	GAATGC	2 cut(s)	283, 808
PdiI	GCCGGC	1 cut(s)	106
PfeI	GAWTC	4 cut(s)	5, 356, 677, 711
PkrI	GCNGC	7 cut(s)	58, 410, 535, 538, 541, 544, 624
PleI	GAGTC	2 cut(s)	115, 341
PpsI	GAGTC	2 cut(s)	115, 341
PpuMI	RGGWCCY	1 cut(s)	749
Psp5II	RGGWCCY	1 cut(s)	749
Psp6I	CCWGG	1 cut(s)	745
PspGI	CCWGG	1 cut(s)	745
PspN4I	GGNNCC	1 cut(s)	499
PspPI	GGNCC	1 cut(s)	749
PspPPI	RGGWCCY	1 cut(s)	749
PstI	CTGCAG	1 cut(s)	544
PstNI	CAGNNNCTG	2 cut(s)	539, 551
PvuII	CAGCTG	2 cut(s)	536, 625
RsaI	GTAC	4 cut(s)	149, 363, 499, 601
RsaNI	GTAC	4 cut(s)	148, 362, 498, 600
RseI	CAYNNNNRTG	1 cut(s)	134
SatI	GCNGC	7 cut(s)	57, 409, 534, 537, 540, 543, 623
Sau3AI	GATC	2 cut(s)	27, 454
Sau96I	GGNCC	1 cut(s)	749
SchI	GAGTC	2 cut(s)	115, 341
ScrFI	CCNGG	1 cut(s)	747
SfcI	CTRYAG	1 cut(s)	540
SinI	GGWCC	1 cut(s)	749
SmiMI	CAYNNNNRTG	1 cut(s)	134
Sse9I	AATT	5 cut(s)	233, 256, 441, 701, 778
SsiI	CCGC	6 cut(s)	57, 70, 113, 246, 490, 507
StyD4I	CCNGG	1 cut(s)	745
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	2 cut(s)	721, 757
TaiI	ACGT	1 cut(s)	858
TaqI	TCGA	4 cut(s)	44, 84, 275, 350
TasI	AATT	5 cut(s)	233, 256, 441, 701, 778
TatI	WGTACW	1 cut(s)	599
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	4 cut(s)	5, 356, 677, 711
TscAI	CASTG	6 cut(s)	141, 381, 621, 702, 712, 724
TseI	GCWGC	6 cut(s)	408, 533, 536, 539, 542, 622
TspGWI	ACGGA	2 cut(s)	165, 268
TspRI	CASTG	6 cut(s)	141, 381, 621, 702, 712, 724
VpaK11BI	GGWCC	1 cut(s)	749
XapI	RAATTY	2 cut(s)	233, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.