Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003819.1

Orthogroup ID

OG0006564

Physical Location & Seq

Genomic Coordinates Reverse (-)

21794 .. 25272

Gene Structure 3479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003819.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

atgtcgtcatcgccggccgcccaaaccgtcgtcgagcacatcgtcctcttcaaggtcaaagacaacgccgacccctccaaggtcaacgcatgggtcaacggcgtcaacggcctgagctcgcttgatcttactctccacctcaccgccggtcccctcctccgcacccgatcctcccctttcgccttcacccacctcctccacagccgctacaagacaaaagacgacctcgccgcctataccgtccacccgggccacatcagcgtcgtcaaggatttaggcctccctatctgtgatgacatcatggccgttgactgggtcgcggatgggctgacgggcccggcggccttgtcccccgggtccgcgatccgggtcacggttttgaagttgaaggaggcgttgggggaggcggctaaaggtgaggttttggaggtgattaagggaattaaggggaagttgggcttgggagaggcggggcagattagcgtcggagagaacttctcgccggggagggccagggggtattcgatcgcgtcggtggcggtttttaagggagtgagtgagatggaggaggtggattcgaagcaggagatgggggaggtggagaaggacaaggttagggagtatttggatagcgtgattgttcttgattatgtggttccgtccctgcaagtgtctgaagatacattatcggattccgccggaagattgcctggacgaacagacaatgaaataaagaatcactggaatactaatttgagcaagaggtcattagagcaagctccacacaatgacattgaggctcatgatcatgatcatgatcatcagcatgatgaatatcctagcaagaaattaaacgaagctgaggatataatttacacggaagatcaaaacaaggccattcgaacaaaagcatttgagctcatgaaggacctaattatcccatctactattgctcttgatgataacaatgtggcggcggcggatggagaaggaggatccagccctcttcattatttcccagttgaacagggaaccgatgagcttgatcaagattggatattcatagaggatgctttattaaggtcggaatattggaaggcttaccatcacggaccatttcaaccgagtaatgtagatcatgtggatctcaatgcctttgagcttaattttctgaattcagaagatgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009817 GO:0010033 GO:0042221 GO:0042579 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Dabb

Protein Analysis

396

Amino Acids

43.43

Weight (kDa)

4.86

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31670
fragaria_vesca	FvH4_1g08350 FvH4_1g08360
malus_domestica	MD15G1215300.v1.1
prunus_persica	Prupe.7G202000_v2.0.a1
pyrus_communis	pycom15g19100
rosa_chinensis	RchiOBHm_Chr2g0094401
rosa_laevigata	RLG00000016490 RLG00000016491
rosa_multiflora	Rmu_sc0003819.1_g000006 Rmu_sc0003819.1_g000007 Rmu_sc0003819.1_g000008 Rmu_sc0022324.1_g000001 Rmu_sc0022325.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147150 Rroxscaffold_2G00147160
rosa_rugosa	Rorug02G0043900 Rorug02G0044000
rosa_samantha	Rh2AG091900 Rh2AG092000 Rh2BG091900 Rh2BG092000 Rh2CG094400 Rh2CG094500 Rh2DG090700 Rh2DG090800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	320, 362, 530
AclWI	GGATC	5 cut(s)	162, 358, 990, 1003, 1152
AcoI	YGGCCR	2 cut(s)	15, 303
AcsI	RAATTY	1 cut(s)	1174
AcuI	CTGAAG	1 cut(s)	696
AcyI	GRCGYC	1 cut(s)	102
AfiI	CCNNNNNNNGG	5 cut(s)	52, 79, 312, 366, 373
AgsI	TTSAA	5 cut(s)	52, 382, 388, 1025, 1121
AjnI	CCWGG	2 cut(s)	512, 709
AjuI	GAANNNNNNNTTGG	4 cut(s)	380, 412, 443, 475
AluBI	AGCT	6 cut(s)	117, 779, 860, 919, 1042, 1162
AluI	AGCT	6 cut(s)	117, 779, 860, 919, 1042, 1162
Alw21I	GWGCWC	3 cut(s)	39, 119, 921
AlwI	GGATC	5 cut(s)	162, 358, 990, 1003, 1152
Ama87I	CYCGRG	2 cut(s)	247, 353
AoxI	GGCC	9 cut(s)	15, 109, 250, 277, 303, 334, 342, 510, 894
ApaI	GGGCCC	1 cut(s)	338
ApoI	RAATTY	1 cut(s)	1174
AspS9I	GGNCC	8 cut(s)	149, 250, 334, 335, 357, 510, 928, 1112
AsuC2I	CCSGG	7 cut(s)	248, 249, 338, 354, 355, 368, 504
AsuHPI	GGTGA	4 cut(s)	133, 178, 428, 442
AsuII	TTCGAA	2 cut(s)	578, 901
AvaI	CYCGRG	2 cut(s)	247, 353
AvaII	GGWCC	4 cut(s)	149, 357, 928, 1112
BaeGI	GKGCMC	1 cut(s)	338
BamHI	GGATCC	1 cut(s)	995
BanII	GRGCYC	3 cut(s)	119, 338, 921
Bbv12I	GWGCWC	3 cut(s)	39, 119, 921
BbvCI	CCTCAGC	1 cut(s)	861
BccI	CCATC	6 cut(s)	317, 556, 583, 949, 977, 1113
BceAI	ACGGC	3 cut(s)	115, 124, 290
BciT130I	CCWGG	2 cut(s)	514, 711
BclI	TGATCA	4 cut(s)	805, 811, 817, 1045
BcnI	CCSGG	7 cut(s)	248, 249, 338, 354, 355, 368, 504
BfaI	CTAG	1 cut(s)	840
BisI	GCNGC	7 cut(s)	18, 205, 231, 342, 408, 975, 978
BlsI	GCNGC	7 cut(s)	19, 206, 232, 343, 409, 976, 979
Bme1390I	CCNGG	9 cut(s)	248, 249, 338, 354, 355, 368, 504, 514, 711
Bme18I	GGWCC	4 cut(s)	149, 357, 928, 1112
BmeT110I	CYCGRG	2 cut(s)	247, 353
BmgT120I	GGNCC	8 cut(s)	149, 250, 334, 335, 357, 510, 928, 1112
BmiI	GGNNCC	6 cut(s)	151, 336, 358, 657, 997, 1033
BmrFI	CCNGG	9 cut(s)	248, 249, 338, 354, 355, 368, 504, 514, 711
BmrI	ACTGGG	2 cut(s)	322, 1013
BmsI	GCATC	2 cut(s)	1060, 1174
BmuI	ACTGGG	2 cut(s)	322, 1013
BplI	GAGNNNNNCTC	2 cut(s)	482, 514
Bpu10I	CCTNAGC	2 cut(s)	113, 861
Bpu14I	TTCGAA	2 cut(s)	578, 901
BpuMI	CCSGG	7 cut(s)	248, 249, 338, 354, 355, 368, 504
BsaBI	GATNNNNATC	3 cut(s)	810, 816, 834
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	6 cut(s)	78, 247, 352, 353, 503, 513
Bsc4I	CCNNNNNNNGG	5 cut(s)	52, 79, 312, 366, 373
Bse118I	RCCGGY	2 cut(s)	13, 146
Bse1I	ACTGG	3 cut(s)	317, 746, 1019
Bse8I	GATNNNNATC	3 cut(s)	810, 816, 834
BseBI	CCWGG	2 cut(s)	514, 711
BseDI	CCNNGG	6 cut(s)	78, 247, 352, 353, 503, 513
BseGI	GGATG	3 cut(s)	328, 988, 1075
BseJI	GATNNNNATC	3 cut(s)	810, 816, 834
BseLI	CCNNNNNNNGG	5 cut(s)	52, 79, 312, 366, 373
BseMII	CTCAG	2 cut(s)	104, 852
BseNI	ACTGG	3 cut(s)	317, 746, 1019
BseRI	GAGGAG	3 cut(s)	146, 185, 581
BseSI	GKGCMC	1 cut(s)	338
BseX3I	CGGCCG	1 cut(s)	15
Bsh1236I	CGCG	3 cut(s)	320, 362, 530
Bsh1285I	CGRYCG	2 cut(s)	18, 528
BshFI	GGCC	9 cut(s)	17, 111, 252, 279, 305, 336, 344, 512, 896
BsiEI	CGRYCG	2 cut(s)	18, 528
BsiHKAI	GWGCWC	3 cut(s)	39, 119, 921
BsiHKCI	CYCGRG	2 cut(s)	247, 353
BsiSI	CCGG	8 cut(s)	14, 147, 248, 338, 354, 367, 503, 699
BslFI	GGGAC	3 cut(s)	135, 334, 646
BslI	CCNNNNNNNGG	5 cut(s)	52, 79, 312, 366, 373
BsmFI	GGGAC	3 cut(s)	135, 334, 646
BsnI	GGCC	9 cut(s)	17, 111, 252, 279, 305, 336, 344, 512, 896
BsoBI	CYCGRG	2 cut(s)	247, 353
Bsp119I	TTCGAA	2 cut(s)	578, 901
Bsp120I	GGGCCC	1 cut(s)	334
Bsp1286I	GDGCHC	4 cut(s)	39, 119, 338, 921
BspANI	GGCC	9 cut(s)	17, 111, 252, 279, 305, 336, 344, 512, 896
BspCNI	CTCAG	2 cut(s)	105, 853
BspFNI	CGCG	3 cut(s)	320, 362, 530
BspHI	TCATGA	4 cut(s)	802, 808, 814, 921
BspLI	GGNNCC	6 cut(s)	151, 336, 358, 657, 997, 1033
BspPI	GGATC	5 cut(s)	162, 358, 990, 1003, 1152
BspT104I	TTCGAA	2 cut(s)	578, 901
BsrFI	RCCGGY	2 cut(s)	13, 146
BsrI	ACTGG	3 cut(s)	317, 746, 1019
BssAI	RCCGGY	2 cut(s)	13, 146
BssECI	CCNNGG	6 cut(s)	78, 247, 352, 353, 503, 513
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	2 cut(s)	514, 711
Bst4CI	ACNGT	3 cut(s)	28, 241, 376
Bst6I	CTCTTC	2 cut(s)	53, 1011
BstACI	GRCGYC	1 cut(s)	102
BstBI	TTCGAA	2 cut(s)	578, 901
BstC8I	GCNNGC	3 cut(s)	15, 119, 777
BstDEI	CTNAG	2 cut(s)	113, 861
BstENI	CCTNNNNNAGG	1 cut(s)	50
BstF5I	GGATG	3 cut(s)	328, 988, 1075
BstFNI	CGCG	3 cut(s)	320, 362, 530
BstMCI	CGRYCG	2 cut(s)	18, 528
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 258, 536
BstNI	CCWGG	2 cut(s)	514, 711
BstSCI	CCNGG	9 cut(s)	246, 247, 336, 352, 353, 366, 502, 512, 709
BstSLI	GKGCMC	1 cut(s)	338
BstUI	CGCG	3 cut(s)	320, 362, 530
BstX2I	RGATCY	2 cut(s)	995, 1144
BstYI	RGATCY	2 cut(s)	995, 1144
BstZI	CGGCCG	1 cut(s)	15
BsuRI	GGCC	9 cut(s)	17, 111, 252, 279, 305, 336, 344, 512, 896
BtsCI	GGATG	3 cut(s)	328, 988, 1075
BtsIMutI	CAGTG	1 cut(s)	739
Cac8I	GCNNGC	3 cut(s)	15, 119, 777
CciI	TCATGA	4 cut(s)	802, 808, 814, 921
Cfr10I	RCCGGY	2 cut(s)	13, 146
Cfr13I	GGNCC	8 cut(s)	149, 250, 334, 335, 357, 510, 928, 1112
Cfr9I	CCCGGG	2 cut(s)	247, 353
CseI	GACGC	4 cut(s)	91, 250, 472, 519
CviAII	CATG	9 cut(s)	90, 301, 803, 809, 815, 827, 922, 1139, 1188
DdeI	CTNAG	2 cut(s)	113, 861
EaeI	YGGCCR	2 cut(s)	15, 303
EagI	CGGCCG	1 cut(s)	15
Eam1104I	CTCTTC	2 cut(s)	53, 1011
EarI	CTCTTC	2 cut(s)	53, 1011
EciI	GGCGGA	2 cut(s)	685, 995
Ecl136II	GAGCTC	2 cut(s)	117, 919
EclXI	CGGCCG	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	78
Eco147I	AGGCCT	1 cut(s)	279
Eco24I	GRGCYC	3 cut(s)	119, 338, 921
Eco47I	GGWCC	4 cut(s)	149, 357, 928, 1112
Eco52I	CGGCCG	1 cut(s)	15
Eco53kI	GAGCTC	2 cut(s)	117, 919
Eco57I	CTGAAG	1 cut(s)	696
Eco88I	CYCGRG	2 cut(s)	247, 353
EcoICRI	GAGCTC	2 cut(s)	117, 919
EcoNI	CCTNNNNNAGG	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	928
EcoRI	GAATTC	1 cut(s)	1174
EcoRII	CCWGG	2 cut(s)	512, 709
EcoT14I	CCWWGG	1 cut(s)	78
EcoT22I	ATGCAT	1 cut(s)	1189
EcoT38I	GRGCYC	3 cut(s)	119, 338, 921
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	9 cut(s)	93, 304, 806, 812, 818, 830, 925, 1142, 1191
FalI	AAGNNNNNCTT	2 cut(s)	443, 475
FaqI	GGGAC	3 cut(s)	135, 334, 646
FatI	CATG	9 cut(s)	89, 300, 802, 808, 814, 826, 921, 1138, 1187
FauI	CCCGC	1 cut(s)	463
FbaI	TGATCA	4 cut(s)	805, 811, 817, 1045
Fnu4HI	GCNGC	7 cut(s)	18, 205, 231, 342, 408, 975, 978
FokI	GGATG	3 cut(s)	335, 995, 1082
FriOI	GRGCYC	3 cut(s)	119, 338, 921
Fsp4HI	GCNGC	7 cut(s)	18, 205, 231, 342, 408, 975, 978
FspBI	CTAG	1 cut(s)	840
GluI	GCNGC	7 cut(s)	18, 205, 231, 342, 408, 975, 978
HaeIII	GGCC	9 cut(s)	17, 111, 252, 279, 305, 336, 344, 512, 896
HapII	CCGG	8 cut(s)	14, 147, 248, 338, 354, 367, 503, 699
HgaI	GACGC	4 cut(s)	91, 250, 472, 519
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	9 cut(s)	93, 304, 806, 812, 818, 830, 925, 1142, 1191
HincII	GTYRAC	4 cut(s)	85, 97, 106, 310
HindII	GTYRAC	4 cut(s)	85, 97, 106, 310
HinfI	GANTC	3 cut(s)	575, 692, 736
HpaII	CCGG	8 cut(s)	14, 147, 248, 338, 354, 367, 503, 699
HphI	GGTGA	4 cut(s)	133, 178, 428, 442
Hpy166II	GTNNAC	5 cut(s)	85, 97, 106, 244, 310
Hpy188I	TCNGA	6 cut(s)	488, 676, 691, 1087, 1173, 1180
Hpy188III	TCNNGA	7 cut(s)	644, 803, 809, 815, 922, 956, 1049
Hpy8I	GTNNAC	5 cut(s)	85, 97, 106, 244, 310
Hpy99I	CGWCG	5 cut(s)	32, 35, 266, 488, 535
HpyAV	CCTTC	6 cut(s)	193, 382, 598, 919, 983, 1090
HpyCH4III	ACNGT	3 cut(s)	28, 241, 376
HpyCH4V	TGCA	2 cut(s)	667, 1187
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 258, 536
HpyF3I	CTNAG	2 cut(s)	113, 861
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	9 cut(s)	93, 304, 806, 812, 818, 830, 925, 1142, 1191
KroI	GCCGGC	1 cut(s)	13
KroNI	GCCGGC	1 cut(s)	15
Ksp22I	TGATCA	4 cut(s)	805, 811, 817, 1045
LmnI	GCTCC	1 cut(s)	784
LweI	GCATC	2 cut(s)	1060, 1174
MaeI	CTAG	1 cut(s)	840
MaeIII	GTNAC	1 cut(s)	370
MboII	GAAGA	5 cut(s)	40, 689, 714, 893, 998
MflI	RGATCY	2 cut(s)	995, 1144
MhlI	GDGCHC	4 cut(s)	39, 119, 338, 921
MluCI	AATT	7 cut(s)	441, 751, 848, 870, 933, 1165, 1174
MmeI	TCCRAC	2 cut(s)	466, 1065
Mph1103I	ATGCAT	1 cut(s)	1189
MroNI	GCCGGC	1 cut(s)	13
MseI	TTAA	6 cut(s)	435, 444, 546, 851, 1079, 1164
MslI	CAYNNNNRTG	3 cut(s)	807, 813, 825
MspI	CCGG	8 cut(s)	14, 147, 248, 338, 354, 367, 503, 699
MspR9I	CCNGG	9 cut(s)	248, 249, 338, 354, 355, 368, 504, 514, 711
MvaI	CCWGG	2 cut(s)	514, 711
MvnI	CGCG	3 cut(s)	320, 362, 530
MwoI	GCNNNNNNNGC	3 cut(s)	108, 258, 536
NaeI	GCCGGC	1 cut(s)	15
NciI	CCSGG	7 cut(s)	248, 249, 338, 354, 355, 368, 504
NgoMIV	GCCGGC	1 cut(s)	13
NlaIII	CATG	9 cut(s)	93, 304, 806, 812, 818, 830, 925, 1142, 1191
NlaIV	GGNNCC	6 cut(s)	151, 336, 358, 657, 997, 1033
NmuCI	GTSAC	1 cut(s)	370
NsiI	ATGCAT	1 cut(s)	1189
NspV	TTCGAA	2 cut(s)	578, 901
PagI	TCATGA	4 cut(s)	802, 808, 814, 921
PceI	AGGCCT	1 cut(s)	279
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PdiI	GCCGGC	1 cut(s)	15
PfeI	GAWTC	3 cut(s)	575, 692, 736
PflFI	GACNNNGTC	1 cut(s)	314
PkrI	GCNGC	7 cut(s)	19, 206, 232, 343, 409, 976, 979
Ple19I	CGATCG	1 cut(s)	528
PpuMI	RGGWCCY	1 cut(s)	928
Psp124BI	GAGCTC	2 cut(s)	119, 921
Psp5II	RGGWCCY	1 cut(s)	928
Psp6I	CCWGG	2 cut(s)	512, 709
PspGI	CCWGG	2 cut(s)	512, 709
PspN4I	GGNNCC	6 cut(s)	151, 336, 358, 657, 997, 1033
PspOMI	GGGCCC	1 cut(s)	334
PspPI	GGNCC	8 cut(s)	149, 250, 334, 335, 357, 510, 928, 1112
PspPPI	RGGWCCY	1 cut(s)	928
PsuI	RGATCY	2 cut(s)	995, 1144
PsyI	GACNNNGTC	1 cut(s)	314
PvuI	CGATCG	1 cut(s)	528
RseI	CAYNNNNRTG	3 cut(s)	807, 813, 825
SacI	GAGCTC	2 cut(s)	119, 921
SaqAI	TTAA	6 cut(s)	435, 444, 546, 851, 1079, 1164
SatI	GCNGC	7 cut(s)	18, 205, 231, 342, 408, 975, 978
Sau96I	GGNCC	8 cut(s)	149, 250, 334, 335, 357, 510, 928, 1112
ScrFI	CCNGG	9 cut(s)	248, 249, 338, 354, 355, 368, 504, 514, 711
SduI	GDGCHC	4 cut(s)	39, 119, 338, 921
SfaNI	GCATC	2 cut(s)	1060, 1174
SfuI	TTCGAA	2 cut(s)	578, 901
SinI	GGWCC	4 cut(s)	149, 357, 928, 1112
SmaI	CCCGGG	2 cut(s)	249, 355
SmiMI	CAYNNNNRTG	3 cut(s)	807, 813, 825
Sse9I	AATT	7 cut(s)	441, 751, 848, 870, 933, 1165, 1174
SseBI	AGGCCT	1 cut(s)	279
SspI	AATATT	1 cut(s)	1091
SspMI	CTAG	1 cut(s)	840
SstI	GAGCTC	2 cut(s)	119, 921
StuI	AGGCCT	1 cut(s)	279
StyD4I	CCNGG	9 cut(s)	246, 247, 336, 352, 353, 366, 502, 512, 709
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	3 cut(s)	28, 241, 376
TaqI	TCGA	4 cut(s)	33, 524, 578, 901
TasI	AATT	7 cut(s)	441, 751, 848, 870, 933, 1165, 1174
TauI	GCSGC	7 cut(s)	20, 207, 233, 344, 410, 977, 980
TfiI	GAWTC	3 cut(s)	575, 692, 736
Tru1I	TTAA	6 cut(s)	435, 444, 546, 851, 1079, 1164
Tru9I	TTAA	6 cut(s)	435, 444, 546, 851, 1079, 1164
TscAI	CASTG	1 cut(s)	746
TseFI	GTSAC	1 cut(s)	370
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	5 cut(s)	741, 846, 938, 998, 1051
TspGWI	ACGGA	3 cut(s)	648, 893, 1125
TspMI	CCCGGG	2 cut(s)	247, 353
TspRI	CASTG	1 cut(s)	746
Tth111I	GACNNNGTC	1 cut(s)	314
VpaK11BI	GGWCC	4 cut(s)	149, 357, 928, 1112
XagI	CCTNNNNNAGG	1 cut(s)	50
XapI	RAATTY	1 cut(s)	1174
XmaI	CCCGGG	2 cut(s)	247, 353
XspI	CTAG	1 cut(s)	840
Zsp2I	ATGCAT	1 cut(s)	1189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.