AT2G33580

LysM domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
14219481 .. 14222254
2774 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G33580.1

Sequence Viewer

Length: 1995 bp
ATGGCTGCGTGTACACTCCACGCGCTCTCAGTCACCTTATTCCTCCTTCTCTTCTTTGCCGTGTCACCGGCGAAAGCTCAGCAACCGTACGTCAACAACCACCAGCTCGCCTGCGAGGTCCGTGTCTACGACAACATAACCAACGGATTCACATGTAACGGCCCACCTTCTTGCCGCTCATACCTCACTTTCTGGTCTCAACCACCGTACAACACGGCGGACTCAATCGCCAAACTCCTCAACGTCTCCGCCGCAGAGATCCAATCAATCAACAACCTCCCCACAGCCACCACCAGAATCCCAACCCGTGAATTAGTCGTGATCCCAGCTAACTGCTCCTGCTCCTCCTCCAGCGGAGGATTTTACCAACACAACGCCACTTACAATCTCTCCGGTAACAGAGGAGATGAAACCTATTTCTCAGTGGCTAACGATACTTACCAAGCTTTATCCACGTGTCAAGCCATGATGTCACAAAACCGTTACGGCGAGAGACAACTAACCCCCGGCTTAAACCTCCTTGTTCCTCTCCGATGTGCTTGTCCCACCGCCAAACAAACCACCGCCGGATTTAAATATCTCCTGACTTACTTAGTCGCCATGGGAGATAGTATCTCCGGCATCGCCGAGATGTTCAACAGCACATCCGCCGCCATAACCGAAGGTAACGAGCTTACATCAGACAATATCTTCTTCTTCACACCGGTTCTAGTTCCTCTCACAACTGAACCTACCAAAATCGTTATATCTCCGTCGCCTCCTCCTCCACCCGTTGTTGCTACGCCGCCTCAAACGCCAGTTGATCCTCCGGGATCTTCTTCTTCTCACAAATGGATCTACATCGGAATTGGAATCGGAGCTGGTTTGCTTCTCTTACTCTCAATCTTAGCTCTCTGCTTCTACAAACGAAGGTCTAAGAAGAAGTCATTACCGTCGTCGTTGCCGGAGGAGAACAAGCTCTTTGATTCATCAACCAAACAATCTATTCCCACAACAACAACGACTCAATGGTCAATAGATTTATCCAATTCATCAGAAGCTTTCGGTTTAAAATCCGCCATAGAATCTCTAACACTATACAGATTCAACGATCTTCAATCAGCTACTTCGAATTTCAGCGACGAAAACAGAATCAAAGGCTCTGTTTATCGCGCGACAATCAACGGCGACGATGCCGCTGTGAAAGTGATCAAAGGAGATGTTTCTTCCTCTGAGATCAATCTTTTGAAGAAGCTAAATCATTCTAATATCATCCGTCTCTCAGGTTTCTGTATCCGTGAAGGAACATCGTACCTCGTCTTCGAGTATTCAGAGAATGGATCGATCAGTGATTGGCTTCACTCGTCGGGCAAGAAGAGTTTGACATGGAAACAGAGAGTTGAAATAGCAAGGGATGTGGCAGAGGCGTTAGATTATCTCCATAACTATATAACTCCACCTCATATTCATAAGAACTTGGAATCAACAAACATACTTCTGGATTCTAATTTCAGAGCCAAGATTGCGAATTTCGGTGTTGCGAGGATTCTTGATGAAGGTGATCTTGATCTTCAGTTAACAAGACATGTTGAAGGAACACAAGGCTACTTAGCTCCAGAGTATGTGGAGAATGGAGTCATTACTTCGAAACTAGACGTGTTTGCTTTTGGAGTTGCGGTTCTTGAGCTTCTTTCGGGGAGAGAAGCAGTAACGATACATAAGAAGAAGGAAGGAGAAGAAGAAGTGGAGATGTTGTGTAAAGTGATAAACAGTGTGCTTGGAGGAGAGAATGTGAGAGAGAAGTTAAAAGAGTTTATGGATCCATCTCTAGGGAATGAGTATCCGTTGGAGCTGGCTTACACCATGGCTCAGCTTGCTAAGAGCTGTGTCGCAACTGATCTTAACTCGCGTCCATCTGTCACTCAGGTTCTAACCACGCTCTCAATGATCGTCTCCTCCTCCATCGATTGGGAGCCTTCTGATGACCTTCTTCGTTCCGGCTCTCTTGGCAACTAG

Protein Analysis

664

Amino Acids

72.57

Weight (kDa)

5.68

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM1_NFP_LYK PF23446 57 - 114 6.5e-18 NFP/LYK LysM1 domain
LysM2_CERK1_LYK3_4_5 PF23472 121 - 178 1.7e-23 LYK3/4/5 LysM2 domain
LysM3_LYK4_5 PF23473 193 - 240 3.5e-21 LYK4/5 LysM3 domain
LysM PF01476 197 - 239 3.9e-06 LysM domain
Pkinase PF00069 380 - 638 1.6e-38 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 380 - 639 2.4e-36 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1009
AccB7I CCANNNNNTGG 1 cut(s) 1947
AccBSI CCGCTC 1 cut(s) 177
AccI GTMKAC 1 cut(s) 126
AccII CGCG 4 cut(s) 23, 1152, 1154, 1888
AclWI GGATC 8 cut(s) 253, 316, 797, 820, 842, 1327, 1793, 1806
AcsI RAATTY 2 cut(s) 1111, 1507
AcuI CTGAAG 1 cut(s) 1535
AcvI CACGTG 1 cut(s) 456
AfaI GTAC 4 cut(s) 13, 89, 209, 1292
AfiI CCNNNNNNNGG 2 cut(s) 1808, 1947
AflIII ACRYGT 4 cut(s) 152, 455, 1564, 1635
AgeI ACCGGT 1 cut(s) 703
AgsI TTSAA 6 cut(s) 637, 1087, 1097, 1228, 1382, 1571
AjiI CACGTC 1 cut(s) 1636
AloI GAACNNNNNNTCC 2 cut(s) 1641, 1673
Alw26I GTCTC 5 cut(s) 201, 250, 487, 1262, 1936
AlwI GGATC 8 cut(s) 253, 316, 797, 820, 842, 1327, 1793, 1806
AoxI GGCC 1 cut(s) 160
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 1111, 1507
AsiGI ACCGGT 1 cut(s) 703
AspLEI GCGC 2 cut(s) 25, 1154
AspS9I GGNCC 2 cut(s) 118, 161
AsuC2I CCSGG 2 cut(s) 507, 810
AsuHPI GGTGA 3 cut(s) 25, 57, 1550
AsuII TTCGAA 2 cut(s) 1109, 1625
AvaII GGWCC 1 cut(s) 118
BamHI GGATCC 1 cut(s) 1798
BarI GAAGNNNNNNTAC 2 cut(s) 1283, 1315
BbrPI CACGTG 1 cut(s) 456
BbsI GAAGAC 1 cut(s) 1291
BccI CCATC 3 cut(s) 1810, 1900, 1949
BceAI ACGGC 5 cut(s) 44, 175, 231, 502, 1180
BciVI GTATCC 2 cut(s) 1283, 1830
BclI TGATCA 1 cut(s) 1188
BcnI CCSGG 2 cut(s) 507, 810
BcoDI GTCTC 5 cut(s) 201, 250, 487, 1262, 1936
BfaI CTAG 4 cut(s) 710, 1631, 1808, 1993
BfuI GTATCC 2 cut(s) 1283, 1830
BisI GCNGC 6 cut(s) 6, 175, 252, 651, 785, 1176
BlpI GCTNAGC 2 cut(s) 78, 1848
BlsI GCNGC 6 cut(s) 7, 176, 253, 652, 786, 1177
Bme1390I CCNGG 2 cut(s) 507, 810
Bme18I GGWCC 1 cut(s) 118
BmgBI CACGTC 1 cut(s) 1636
BmgT120I GGNCC 2 cut(s) 118, 161
BmiI GGNNCC 2 cut(s) 1800, 1953
BmrFI CCNGG 2 cut(s) 507, 810
BmsI GCATC 2 cut(s) 630, 1162
BpiI GAAGAC 1 cut(s) 1291
BpmI CTGGAG 2 cut(s) 334, 1578
Bpu1102I GCTNAGC 2 cut(s) 78, 1848
Bpu14I TTCGAA 2 cut(s) 1109, 1625
BpuEI CTTGAG 1 cut(s) 1682
BpuMI CCSGG 2 cut(s) 507, 810
Bsa29I ATCGAT 2 cut(s) 1322, 1944
BsaAI YACGTR 1 cut(s) 456
BsaBI GATNNNNATC 2 cut(s) 839, 1545
BsaI GGTCTC 1 cut(s) 201
BsaJI CCNNGG 3 cut(s) 505, 600, 1842
BsaWI WCCGGW 2 cut(s) 392, 703
BsaXI ACNNNNNCTCC 8 cut(s) 374, 404, 1641, 1671, 1718, 1748, 1755, 1785
Bsc4I CCNNNNNNNGG 2 cut(s) 1808, 1947
Bse118I RCCGGY 2 cut(s) 67, 703
Bse1I ACTGG 1 cut(s) 797
Bse8I GATNNNNATC 2 cut(s) 839, 1545
BseCI ATCGAT 2 cut(s) 1322, 1944
BseDI CCNNGG 3 cut(s) 505, 600, 1842
BseGI GGATG 3 cut(s) 644, 1251, 1399
BseJI GATNNNNATC 2 cut(s) 839, 1545
BseLI CCNNNNNNNGG 2 cut(s) 1808, 1947
BseMII CTCAG 7 cut(s) 42, 92, 435, 1203, 1275, 1862, 1916
BseNI ACTGG 1 cut(s) 797
BseYI CCCAGC 1 cut(s) 325
Bsh1236I CGCG 4 cut(s) 23, 1152, 1154, 1888
BshFI GGCC 1 cut(s) 162
BshTI ACCGGT 1 cut(s) 703
BshVI ATCGAT 2 cut(s) 1322, 1944
BsiSI CCGG 9 cut(s) 68, 393, 507, 567, 618, 704, 809, 944, 1977
BsiWI CGTACG 1 cut(s) 87
BslFI GGGAC 1 cut(s) 528
BslI CCNNNNNNNGG 2 cut(s) 1808, 1947
BsmAI GTCTC 5 cut(s) 201, 250, 487, 1262, 1936
BsmBI CGTCTC 3 cut(s) 250, 1262, 1936
BsmFI GGGAC 1 cut(s) 528
BsnI GGCC 1 cut(s) 162
Bso31I GGTCTC 1 cut(s) 201
Bsp119I TTCGAA 2 cut(s) 1109, 1625
Bsp1407I TGTACA 1 cut(s) 11
Bsp1720I GCTNAGC 2 cut(s) 78, 1848
Bsp19I CCATGG 2 cut(s) 600, 1842
BspANI GGCC 1 cut(s) 162
BspCNI CTCAG 7 cut(s) 41, 91, 434, 1204, 1274, 1861, 1915
BspDI ATCGAT 2 cut(s) 1322, 1944
BspFNI CGCG 4 cut(s) 23, 1152, 1154, 1888
BspLI GGNNCC 2 cut(s) 1800, 1953
BspPI GGATC 8 cut(s) 253, 316, 797, 820, 842, 1327, 1793, 1806
BspT104I TTCGAA 2 cut(s) 1109, 1625
BspTNI GGTCTC 1 cut(s) 201
BsrBI CCGCTC 1 cut(s) 177
BsrFI RCCGGY 2 cut(s) 67, 703
BsrGI TGTACA 1 cut(s) 11
BsrI ACTGG 1 cut(s) 797
BssAI RCCGGY 2 cut(s) 67, 703
BssECI CCNNGG 3 cut(s) 505, 600, 1842
BssT1I CCWWGG 2 cut(s) 600, 1842
Bst4CI ACNGT 5 cut(s) 87, 207, 482, 933, 1751
Bst6I CTCTTC 2 cut(s) 56, 1349
BstAUI TGTACA 1 cut(s) 11
BstBAI YACGTR 1 cut(s) 456
BstBI TTCGAA 2 cut(s) 1109, 1625
BstC8I GCNNGC 4 cut(s) 108, 112, 1833, 1854
BstDSI CCRYGG 2 cut(s) 600, 1842
BstF5I GGATG 3 cut(s) 644, 1251, 1399
BstFNI CGCG 4 cut(s) 23, 1152, 1154, 1888
BstHHI GCGC 2 cut(s) 25, 1154
BstMAI GTCTC 5 cut(s) 201, 250, 487, 1262, 1936
BstMWI GCNNNNNNNGC 4 cut(s) 793, 1502, 1853, 1986
BstNSI RCATGY 2 cut(s) 156, 1568
BstSCI CCNGG 2 cut(s) 505, 808
BstUI CGCG 4 cut(s) 23, 1152, 1154, 1888
BstV2I GAAGAC 1 cut(s) 1291
BstX2I RGATCY 4 cut(s) 258, 812, 834, 1798
BstYI RGATCY 4 cut(s) 258, 812, 834, 1798
Bsu15I ATCGAT 2 cut(s) 1322, 1944
BsuI GTATCC 2 cut(s) 1283, 1830
BsuRI GGCC 1 cut(s) 162
BsuTUI ATCGAT 2 cut(s) 1322, 1944
BtgI CCRYGG 2 cut(s) 600, 1842
BtgZI GCGATG 1 cut(s) 607
BtrI CACGTC 1 cut(s) 1636
BtsCI GGATG 3 cut(s) 644, 1251, 1399
BtsIMutI CAGTG 3 cut(s) 429, 1333, 1756
Cac8I GCNNGC 4 cut(s) 108, 112, 1833, 1854
CfoI GCGC 2 cut(s) 25, 1154
Cfr10I RCCGGY 2 cut(s) 67, 703
Cfr13I GGNCC 2 cut(s) 118, 161
ClaI ATCGAT 2 cut(s) 1322, 1944
CseI GACGC 1 cut(s) 1877
Csp6I GTAC 4 cut(s) 12, 88, 208, 1291
CspAI ACCGGT 1 cut(s) 703
CspCI CAANNNNNGTGG 2 cut(s) 1377, 1412
CviAII CATG 6 cut(s) 153, 466, 601, 1365, 1565, 1843
CviQI GTAC 4 cut(s) 12, 88, 208, 1291
DraI TTTAAA 2 cut(s) 574, 1050
DrdI GACNNNNNNGTC 1 cut(s) 1009
DseDI GACNNNNNNGTC 1 cut(s) 1009
Eam1104I CTCTTC 2 cut(s) 56, 1349
EarI CTCTTC 2 cut(s) 56, 1349
EciI GGCGGA 4 cut(s) 233, 238, 637, 1045
Eco130I CCWWGG 2 cut(s) 600, 1842
Eco31I GGTCTC 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 1535
Eco72I CACGTG 1 cut(s) 456
EcoT14I CCWWGG 2 cut(s) 600, 1842
ErhI CCWWGG 2 cut(s) 600, 1842
Esp3I CGTCTC 3 cut(s) 250, 1262, 1936
FaeI CATG 6 cut(s) 156, 469, 604, 1368, 1568, 1846
FalI AAGNNNNNCTT 2 cut(s) 1527, 1559
FaqI GGGAC 1 cut(s) 528
FatI CATG 6 cut(s) 152, 465, 600, 1364, 1564, 1842
FbaI TGATCA 1 cut(s) 1188
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 6 cut(s) 6, 175, 252, 651, 785, 1176
FokI GGATG 3 cut(s) 631, 1238, 1406
Fsp4HI GCNGC 6 cut(s) 6, 175, 252, 651, 785, 1176
FspBI CTAG 4 cut(s) 710, 1631, 1808, 1993
GlaI GCGC 2 cut(s) 24, 1153
GluI GCNGC 6 cut(s) 6, 175, 252, 651, 785, 1176
GsaI CCCAGC 1 cut(s) 329
GsuI CTGGAG 2 cut(s) 334, 1578
HaeIII GGCC 1 cut(s) 162
HapII CCGG 9 cut(s) 68, 393, 507, 567, 618, 704, 809, 944, 1977
HgaI GACGC 1 cut(s) 1877
HhaI GCGC 2 cut(s) 25, 1154
Hin1II CATG 6 cut(s) 156, 469, 604, 1368, 1568, 1846
Hin6I GCGC 2 cut(s) 23, 1152
HinP1I GCGC 2 cut(s) 23, 1152
HincII GTYRAC 2 cut(s) 94, 1557
HindII GTYRAC 2 cut(s) 94, 1557
HindIII AAGCTT 2 cut(s) 444, 1038
HpaI GTTAAC 1 cut(s) 1557
HpaII CCGG 9 cut(s) 68, 393, 507, 567, 618, 704, 809, 944, 1977
HphI GGTGA 3 cut(s) 25, 57, 1550
Hpy166II GTNNAC 5 cut(s) 12, 14, 94, 127, 1557
Hpy188I TCNGA 9 cut(s) 533, 682, 845, 857, 1036, 1213, 1312, 1493, 1960
Hpy188III TCNNGA 7 cut(s) 319, 583, 1478, 1529, 1544, 1595, 1661
Hpy8I GTNNAC 5 cut(s) 12, 14, 94, 127, 1557
Hpy99I CGWCG 6 cut(s) 757, 937, 940, 1124, 1172, 1348
HpyCH4III ACNGT 5 cut(s) 87, 207, 482, 933, 1751
HpyCH4IV ACGT 4 cut(s) 90, 243, 455, 1635
HpyF10VI GCNNNNNNNGC 4 cut(s) 793, 1502, 1853, 1986
HpySE526I ACGT 4 cut(s) 90, 243, 455, 1635
Hsp92II CATG 6 cut(s) 156, 469, 604, 1368, 1568, 1846
HspAI GCGC 2 cut(s) 23, 1152
Ksp22I TGATCA 1 cut(s) 1188
KspAI GTTAAC 1 cut(s) 1557
LmnI GCTCC 6 cut(s) 341, 347, 857, 1597, 1828, 1951
LweI GCATC 2 cut(s) 630, 1162
MaeI CTAG 4 cut(s) 710, 1631, 1808, 1993
MaeII ACGT 4 cut(s) 90, 243, 455, 1635
MaeIII GTNAC 9 cut(s) 31, 63, 155, 395, 471, 482, 665, 1687, 1897
MbiI CCGCTC 1 cut(s) 177
MflI RGATCY 4 cut(s) 258, 812, 834, 1798
MluCI AATT 6 cut(s) 311, 846, 1027, 1111, 1486, 1507
MlyI GAGTC 3 cut(s) 215, 997, 1623
MmeI TCCRAC 1 cut(s) 1806
MseI TTAA 6 cut(s) 512, 573, 1049, 1556, 1784, 1881
MspA1I CMGCKG 2 cut(s) 354, 1178
MspI CCGG 9 cut(s) 68, 393, 507, 567, 618, 704, 809, 944, 1977
MspR9I CCNGG 2 cut(s) 507, 810
MvnI CGCG 4 cut(s) 23, 1152, 1154, 1888
MwoI GCNNNNNNNGC 4 cut(s) 793, 1502, 1853, 1986
NciI CCSGG 2 cut(s) 507, 810
NcoI CCATGG 2 cut(s) 600, 1842
NlaIII CATG 6 cut(s) 156, 469, 604, 1368, 1568, 1846
NlaIV GGNNCC 2 cut(s) 1800, 1953
NmeAIII GCCGAG 1 cut(s) 652
NmuCI GTSAC 4 cut(s) 31, 63, 471, 1897
NspI RCATGY 2 cut(s) 156, 1568
NspV TTCGAA 2 cut(s) 1109, 1625
PciI ACATGT 2 cut(s) 152, 1564
Pfl23II CGTACG 1 cut(s) 87
PflMI CCANNNNNTGG 1 cut(s) 1947
PfoI TCCNGGA 1 cut(s) 808
PinAI ACCGGT 1 cut(s) 703
PkrI GCNGC 6 cut(s) 7, 176, 253, 652, 786, 1177
PleI GAGTC 3 cut(s) 215, 997, 1622
PmaCI CACGTG 1 cut(s) 456
PmlI CACGTG 1 cut(s) 456
PpsI GAGTC 3 cut(s) 215, 997, 1622
Ppu21I YACGTR 1 cut(s) 456
PscI ACATGT 2 cut(s) 152, 1564
PspCI CACGTG 1 cut(s) 456
PspFI CCCAGC 1 cut(s) 325
PspLI CGTACG 1 cut(s) 87
PspN4I GGNNCC 2 cut(s) 1800, 1953
PspPI GGNCC 2 cut(s) 118, 161
PsuI RGATCY 4 cut(s) 258, 812, 834, 1798
RsaI GTAC 4 cut(s) 13, 89, 209, 1292
RsaNI GTAC 4 cut(s) 12, 88, 208, 1291
SaqAI TTAA 6 cut(s) 512, 573, 1049, 1556, 1784, 1881
SatI GCNGC 6 cut(s) 6, 175, 252, 651, 785, 1176
Sau96I GGNCC 2 cut(s) 118, 161
SchI GAGTC 3 cut(s) 215, 997, 1623
ScrFI CCNGG 2 cut(s) 507, 810
SfaNI GCATC 2 cut(s) 630, 1162
SfuI TTCGAA 2 cut(s) 1109, 1625
SgrAI CRCCGGYG 1 cut(s) 67
SinI GGWCC 1 cut(s) 118
SmiI ATTTAAAT 1 cut(s) 574
SmlI CTYRAG 1 cut(s) 1661
SmoI CTYRAG 1 cut(s) 1661
Sse9I AATT 6 cut(s) 311, 846, 1027, 1111, 1486, 1507
SspMI CTAG 4 cut(s) 710, 1631, 1808, 1993
StyD4I CCNGG 2 cut(s) 505, 808
StyI CCWWGG 2 cut(s) 600, 1842
SwaI ATTTAAAT 1 cut(s) 574
TaaI ACNGT 5 cut(s) 87, 207, 482, 933, 1751
TaiI ACGT 4 cut(s) 93, 246, 458, 1638
TaqI TCGA 5 cut(s) 1109, 1302, 1322, 1625, 1944
TasI AATT 6 cut(s) 311, 846, 1027, 1111, 1486, 1507
TatI WGTACW 1 cut(s) 11
TauI GCSGC 5 cut(s) 177, 254, 653, 787, 1178
Tru1I TTAA 6 cut(s) 512, 573, 1049, 1556, 1784, 1881
Tru9I TTAA 6 cut(s) 512, 573, 1049, 1556, 1784, 1881
TscAI CASTG 3 cut(s) 429, 1333, 1756
TseFI GTSAC 4 cut(s) 31, 63, 471, 1897
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 4 cut(s) 31, 63, 471, 1897
TspDTI ATGAA 5 cut(s) 423, 957, 1020, 1436, 1548
TspGWI ACGGA 6 cut(s) 110, 159, 741, 1244, 1265, 1812
TspRI CASTG 3 cut(s) 429, 1333, 1756
Van91I CCANNNNNTGG 1 cut(s) 1947
VpaK11BI GGWCC 1 cut(s) 118
XapI RAATTY 2 cut(s) 1111, 1507
XceI RCATGY 2 cut(s) 156, 1568
XmiI GTMKAC 1 cut(s) 126
XspI CTAG 4 cut(s) 710, 1631, 1808, 1993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.