Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008355

Physical Location & Seq

Genomic Coordinates Reverse (-)

35522535 .. 35524865

Gene Structure 2331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19473

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1998 bp

ATGAAGATGCAGATGACGCTGTTAATGGTAATGGTGGTCTCTCTTCTAGTTGCAGTCGTGCATGGGCAGCAGAGCTACTTGGAAAACAACCAGCTCGACTGCGACAACGACTCCAACATCACCGCCGGCTACATCTGCAACGGCGCCGCTCCCTCATGCGCCTCCTACGTCACTTTCCTCTCCATCAGCCACTACAACACCCCCACCTCAATCGCCTCCCTCCTCGGCTCCACCCCCTCCGACATCGCCGCCGCCAACAACATCTCCGATGTCGACCCCATCCCCACCGACACCTCCGTCCTTGTCCCCCTCAACTGCTCCTGCTCCGGCCCCTACTCCCAGCACAACGTCTCCTACACCCTGAAGCCCGACGACACCTACTTCGTCATCGCCAACAACACCTACCAGGGACTCACGACCTGTCAGGCCCTCAGGCATCAGAACCCCTACGACCCTCTGAACCTCGAGGGCGGCCTTGTCATAGAGGTGCCGATCAGGTGTGCTTGCCCCACCGCCAAACAGACCGCTGCCGGGATCAAGTACCTGCTGGCCTACCTCATCGACTTGGAAGACGATCTCGACAAAATCGCCATACGCTTCGCCGTAGATGTACCCACTTTGCTCGAAGCAAACAACTTTAAGACCTCCGACGACATCATCTATCCCTACCAAGCTGTTCTAGTTCCTCTCACAACCAAACCTTCTCCTCTTCAACTGAAGTATCCAAGCTCTCCTCCACCTCCGCCTTCTCCTCCTCCTCCTCTGCCGCCGTCATCACCAGCGCCTCCCTCACCACCAAGTGGGTCTTCCAACAAGAAGTGGGTCTTCATCGGCGTTGGCGTCGGAGCTGGCTGTCTCCTCCTACTTATATCTATCCTCGCCTTCCTCTTCTTGTCAAAACGACGACGCCGTCAGCACCGGCGCCACTCTCCCAACCACAAATTAAAGAGCTCCGGTAATAACACGCAGAACTCGCTACCCACCACCACCACCACCACCTCCAACGACACAACAACATCGTGGTCGCCAATATCCACCAACGGGCTTAAAAACGCAGTGGAGTCTTTGACAGCTTACAAGTTCGAAGACCTGCAGAACGCCACTCAATTCTTCAACGAAGCCAACAGAATCGCCGGCTCCTCTGTCTTCAGAGCTACCTTTGACGGTGAAGATGCTGCCGTCAAGGTGATGACATGCAACTTGTCCCTCTCCGCCGACGAGATCAACATATTAAAGCGGATCAACCACTCCAACATTATCAGTCTCTCAGGATTCTGTGTCCACAAAGGAAACACATACCTCGTTTACGAGTTTGCTCCTTCTGGCTCACTCATTGATTGTCTTGGGTTGAAGGGCAACATTACTCCTCTGTCATGGAAGCAGAGAGTTCACATTGCTAATGACGTGGCCAATGCGCTCAACTATCTACACAACTTCACACACCCTCCATTAATCCACAAGAACCTGAACACCAGCAACATTCTCCTGGATGCAAACTTGAGAGCCAAAGTTGCCAATTTCGGTCTGGCAAGAGCTGTGGATTTGGGGAAGGAAGTCGAAGATGGAGGACAGGGATTTCAACTGACGAGACATGTGGTGGGTACACGGGGCTACATGGCGCCGGAGTACATGGAAGACGGGGTGATTACTCCGAAACTGGATGTGTTTGCATTTGGGGTTGTGTTGTTGGAGCTATTGTCCGGAAGACCAGCCTCAGGTGATGAAGAATACACGTTGCTCTATTCATCCATTAGTGGGGTGCTTGAAGGAGATCATGTGGGGGACAAAATTAAAGGGTTTATGGATCCTTCTCTGAGGCGCCAGTATCCTTTGGAGCTGGCGTTTTCAATGGCTCAGCTCGCTAAGAGCTGCGTTGCGCCTCAGATCAACTCACGACCCACCATGGCTCAAGCTTCTGGTACTCTATCTAAGATTCTTTCGTCAACTCTCGACTGGGATTCATCTAAAGCTGTGGATCTTGAACATTCAAGGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009719 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0035690 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071323 GO:0071417 GO:0071495 GO:0071704 GO:0071944 GO:0097367 GO:0140096 GO:1901564 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

665

Amino Acids

72.05

Weight (kDa)

6.25

Isoelectric Point (pI)

48.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LysM1_NFP_LYK	PF23446	52 - 108	5.2e-17	NFP/LYK LysM1 domain
LysM2_CERK1_LYK3_4_5	PF23472	112 - 166	1.5e-25	LYK3/4/5 LysM2 domain
LysM2_NFP	PF23457	113 - 165	3.8e-08	NFP LysM2 domain
LysM3_LYK4_5	PF23473	181 - 230	4.7e-12	LYK4/5 LysM3 domain
Pkinase	PF00069	388 - 638	2.6e-35	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	390 - 638	9.8e-34	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33580
fragaria_vesca	FvH4_5g26710 FvH4_5g26740
prunus_persica	Prupe.5G001000_v2.0.a1
pyrus_communis	pycom16g26340
rosa_chinensis	RchiOBHm_Chr7g0217591 RchiOBHm_Chr7g0217601
rosa_laevigata	RLG00000002457 RLG00000002458
rosa_multiflora	Rmu_co8386267.1_g000001 Rmu_sc0006161.1_g000002 Rmu_ssc0000225.1_g000002
rosa_roxburghii	Rroxscaffold_3G00241810 Rroxscaffold_3G00241840
rosa_rugosa	Rorug07G0170300 Rorug07G0170300
rosa_samantha	Rh7AG310400 Rh7BG301700 Rh7CG329400 Rh7DG309800 Rh7DG310500
rosa_wichuraiana	Rw7G026310 Rw7G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	296, 909
AbsI	CCTCGAGG	1 cut(s)	464
Acc36I	ACCTGC	2 cut(s)	552, 1098
AccB1I	GGYRCC	5 cut(s)	143, 487, 921, 1618, 1818
AccB7I	CCANNNNNTGG	1 cut(s)	800
AccBSI	CCGCTC	1 cut(s)	149
AccI	GTMKAC	1 cut(s)	273
AccIII	TCCGGA	1 cut(s)	1700
AclWI	GGATC	5 cut(s)	542, 1247, 1799, 1812, 1983
AcoI	YGGCCR	1 cut(s)	1407
AcuI	CTGAAG	3 cut(s)	383, 737, 1132
AcyI	GRCGYC	6 cut(s)	144, 840, 907, 922, 1619, 1819
AdeI	CACNNNGTG	1 cut(s)	800
AfaI	GTAC	5 cut(s)	542, 612, 1603, 1628, 1921
AfiI	CCNNNNNNNGG	5 cut(s)	531, 800, 1041, 1715, 1755
AflIII	ACRYGT	2 cut(s)	1591, 1731
AgsI	TTSAA	8 cut(s)	713, 1114, 1351, 1580, 1766, 1848, 1982, 1989
AjiI	CACGTC	1 cut(s)	1405
AjnI	CCWGG	2 cut(s)	405, 1485
AjuI	GAANNNNNNNTTGG	2 cut(s)	790, 822
Alw21I	GWGCWC	1 cut(s)	953
Alw26I	GTCTC	5 cut(s)	43, 355, 860, 1268, 1582
AlwI	GGATC	5 cut(s)	542, 1247, 1799, 1812, 1983
Ama87I	CYCGRG	1 cut(s)	464
Aor13HI	TCCGGA	1 cut(s)	1700
AoxI	GGCC	5 cut(s)	328, 426, 472, 549, 1407
ApeKI	GCWGC	4 cut(s)	67, 527, 1175, 1869
ArsI	GACNNNNNNTTYG	2 cut(s)	365, 397
AseI	ATTAAT	1 cut(s)	1451
AspLEI	GCGC	8 cut(s)	146, 161, 784, 924, 1417, 1621, 1821, 1879
AspS9I	GGNCC	3 cut(s)	329, 427, 1992
AsuC2I	CCSGG	1 cut(s)	532
AsuHPI	GGTGA	7 cut(s)	112, 768, 783, 1178, 1198, 1654, 1730
AsuII	TTCGAA	1 cut(s)	1083
AvaI	CYCGRG	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	1992
AxyI	CCTNAGG	2 cut(s)	431, 1714
BaeI	ACNNNNGTAYC	2 cut(s)	704, 737
BalI	TGGCCA	1 cut(s)	1409
BamHI	GGATCC	1 cut(s)	1804
BanI	GGYRCC	5 cut(s)	143, 487, 921, 1618, 1818
BanII	GRGCYC	1 cut(s)	953
BbsI	GAAGAC	7 cut(s)	576, 798, 817, 1092, 1138, 1641, 1711
Bbv12I	GWGCWC	1 cut(s)	953
BbvI	GCAGC	4 cut(s)	79, 514, 1162, 1856
BccI	CCATC	3 cut(s)	191, 287, 1556
BceAI	ACGGC	5 cut(s)	157, 587, 754, 894, 1163
BciT130I	CCWGG	2 cut(s)	407, 1487
BciVI	GTATCC	2 cut(s)	732, 1836
BcnI	CCSGG	1 cut(s)	532
BcoDI	GTCTC	5 cut(s)	43, 355, 860, 1268, 1582
BfaI	CTAG	2 cut(s)	47, 680
BfmI	CTRYAG	1 cut(s)	1091
BfoI	RGCGCY	5 cut(s)	147, 785, 925, 1622, 1822
BfuAI	ACCTGC	2 cut(s)	552, 1098
BfuI	GTATCC	2 cut(s)	732, 1836
BisI	GCNGC	9 cut(s)	68, 147, 249, 252, 472, 528, 767, 1176, 1870
BlpI	GCTNAGC	1 cut(s)	1854
BlsI	GCNGC	9 cut(s)	69, 148, 250, 253, 473, 529, 768, 1177, 1871
Bme1390I	CCNGG	3 cut(s)	407, 532, 1487
Bme18I	GGWCC	1 cut(s)	1992
BmeT110I	CYCGRG	1 cut(s)	464
BmgBI	CACGTC	1 cut(s)	1405
BmgT120I	GGNCC	3 cut(s)	329, 427, 1992
BmiI	GGNNCC	9 cut(s)	145, 229, 331, 489, 923, 1138, 1620, 1806, 1820
BmrFI	CCNGG	3 cut(s)	407, 532, 1487
BmrI	ACTGGG	1 cut(s)	1963
BmsI	GCATC	3 cut(s)	445, 1162, 1480
BmuI	ACTGGG	1 cut(s)	1963
BpiI	GAAGAC	7 cut(s)	576, 798, 817, 1092, 1138, 1641, 1711
Bpu1102I	GCTNAGC	1 cut(s)	1854
Bpu14I	TTCGAA	1 cut(s)	1083
BpuEI	CTTGAG	2 cut(s)	1519, 1893
BpuMI	CCSGG	1 cut(s)	532
BsaHI	GRCGYC	6 cut(s)	144, 840, 907, 922, 1619, 1819
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	3 cut(s)	223, 406, 1902
BsaWI	WCCGGW	2 cut(s)	953, 1700
Bsc4I	CCNNNNNNNGG	5 cut(s)	531, 800, 1041, 1715, 1755
Bse118I	RCCGGY	3 cut(s)	125, 918, 1133
Bse1I	ACTGG	3 cut(s)	1662, 1822, 1958
Bse21I	CCTNAGG	2 cut(s)	431, 1714
Bse3DI	GCAATG	1 cut(s)	1392
BseAI	TCCGGA	1 cut(s)	1700
BseBI	CCWGG	2 cut(s)	407, 1487
BseDI	CCNNGG	3 cut(s)	223, 406, 1902
BseGI	GGATG	4 cut(s)	279, 1495, 1666, 1745
BseLI	CCNNNNNNNGG	5 cut(s)	531, 800, 1041, 1715, 1755
BseMI	GCAATG	1 cut(s)	1392
BseMII	CTCAG	6 cut(s)	445, 1281, 1728, 1805, 1868, 1895
BseNI	ACTGG	3 cut(s)	1662, 1822, 1958
BseXI	GCAGC	4 cut(s)	79, 514, 1162, 1856
BseYI	CCCAGC	1 cut(s)	339
BshFI	GGCC	5 cut(s)	330, 428, 474, 551, 1409
BshNI	GGYRCC	5 cut(s)	143, 487, 921, 1618, 1818
BsiHKAI	GWGCWC	1 cut(s)	953
BsiHKCI	CYCGRG	1 cut(s)	464
BsiSI	CCGG	8 cut(s)	126, 327, 531, 919, 954, 1134, 1622, 1701
BslFI	GGGAC	4 cut(s)	290, 423, 1189, 1796
BslI	CCNNNNNNNGG	5 cut(s)	531, 800, 1041, 1715, 1755
BsmAI	GTCTC	5 cut(s)	43, 355, 860, 1268, 1582
BsmBI	CGTCTC	1 cut(s)	355
BsmFI	GGGAC	4 cut(s)	290, 423, 1189, 1796
BsnI	GGCC	5 cut(s)	330, 428, 474, 551, 1409
Bso31I	GGTCTC	1 cut(s)	43
BsoBI	CYCGRG	1 cut(s)	464
Bsp119I	TTCGAA	1 cut(s)	1083
Bsp1286I	GDGCHC	1 cut(s)	953
Bsp13I	TCCGGA	1 cut(s)	1700
Bsp143I	GATC	9 cut(s)	492, 534, 574, 1221, 1239, 1771, 1804, 1884, 1975
Bsp1720I	GCTNAGC	1 cut(s)	1854
Bsp19I	CCATGG	1 cut(s)	1902
BspANI	GGCC	5 cut(s)	330, 428, 474, 551, 1409
BspCNI	CTCAG	6 cut(s)	444, 1280, 1727, 1806, 1867, 1894
BspEI	TCCGGA	1 cut(s)	1700
BspLI	GGNNCC	9 cut(s)	145, 229, 331, 489, 923, 1138, 1620, 1806, 1820
BspMAI	CTGCAG	1 cut(s)	1095
BspMI	ACCTGC	2 cut(s)	552, 1098
BspPI	GGATC	5 cut(s)	542, 1247, 1799, 1812, 1983
BspT104I	TTCGAA	1 cut(s)	1083
BspT107I	GGYRCC	5 cut(s)	143, 487, 921, 1618, 1818
BspTNI	GGTCTC	1 cut(s)	43
BsrBI	CCGCTC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	1392
BsrFI	RCCGGY	3 cut(s)	125, 918, 1133
BsrI	ACTGG	3 cut(s)	1662, 1822, 1958
BssAI	RCCGGY	3 cut(s)	125, 918, 1133
BssECI	CCNNGG	3 cut(s)	223, 406, 1902
BssMI	GATC	9 cut(s)	492, 534, 574, 1221, 1239, 1771, 1804, 1884, 1975
BssNI	GRCGYC	6 cut(s)	144, 840, 907, 922, 1619, 1819
BssT1I	CCWWGG	1 cut(s)	1902
Bst2UI	CCWGG	2 cut(s)	407, 1487
Bst4CI	ACNGT	1 cut(s)	1166
Bst6I	CTCTTC	3 cut(s)	48, 714, 893
BstACI	GRCGYC	6 cut(s)	144, 840, 907, 922, 1619, 1819
BstBI	TTCGAA	1 cut(s)	1083
BstC8I	GCNNGC	7 cut(s)	127, 505, 549, 850, 1135, 1839, 1860
BstDEI	CTNAG	8 cut(s)	431, 1267, 1714, 1814, 1854, 1863, 1881, 1929
BstDSI	CCRYGG	1 cut(s)	1902
BstF5I	GGATG	4 cut(s)	279, 1495, 1666, 1745
BstH2I	RGCGCY	5 cut(s)	147, 785, 925, 1622, 1822
BstHHI	GCGC	8 cut(s)	146, 161, 784, 924, 1417, 1621, 1821, 1879
BstKTI	GATC	9 cut(s)	495, 537, 577, 1224, 1242, 1774, 1807, 1887, 1978
BstMAI	GTCTC	5 cut(s)	43, 355, 860, 1268, 1582
BstMBI	GATC	9 cut(s)	492, 534, 574, 1221, 1239, 1771, 1804, 1884, 1975
BstMWI	GCNNNNNNNGC	6 cut(s)	16, 67, 135, 973, 1511, 1859
BstNI	CCWGG	2 cut(s)	407, 1487
BstNSI	RCATGY	2 cut(s)	1197, 1595
BstSCI	CCNGG	3 cut(s)	405, 530, 1485
BstSFI	CTRYAG	1 cut(s)	1091
BstV1I	GCAGC	4 cut(s)	79, 514, 1162, 1856
BstV2I	GAAGAC	7 cut(s)	576, 798, 817, 1092, 1138, 1641, 1711
BstX2I	RGATCY	2 cut(s)	1804, 1975
BstYI	RGATCY	2 cut(s)	1804, 1975
Bsu36I	CCTNAGG	2 cut(s)	431, 1714
BsuI	GTATCC	2 cut(s)	732, 1836
BsuRI	GGCC	5 cut(s)	330, 428, 474, 551, 1409
BtgI	CCRYGG	1 cut(s)	1902
BtgZI	GCGATG	2 cut(s)	229, 373
BtrI	CACGTC	1 cut(s)	1405
BtsCI	GGATG	4 cut(s)	279, 1495, 1666, 1745
BtsI	GCAGTG	1 cut(s)	1062
BtsIMutI	CAGTG	1 cut(s)	1062
BveI	ACCTGC	2 cut(s)	552, 1098
Cac8I	GCNNGC	7 cut(s)	127, 505, 549, 850, 1135, 1839, 1860
CfoI	GCGC	8 cut(s)	146, 161, 784, 924, 1417, 1621, 1821, 1879
Cfr10I	RCCGGY	3 cut(s)	125, 918, 1133
Cfr13I	GGNCC	3 cut(s)	329, 427, 1992
CseI	GACGC	3 cut(s)	25, 829, 915
Csp6I	GTAC	5 cut(s)	541, 611, 1602, 1627, 1920
CspCI	CAANNNNNGTGG	2 cut(s)	1518, 1553
CviAII	CATG	9 cut(s)	62, 156, 1194, 1374, 1592, 1615, 1630, 1775, 1903
CviQI	GTAC	5 cut(s)	541, 611, 1602, 1627, 1920
DdeI	CTNAG	8 cut(s)	431, 1267, 1714, 1814, 1854, 1863, 1881, 1929
DinI	GGCGCC	4 cut(s)	145, 923, 1620, 1820
DpnI	GATC	9 cut(s)	494, 536, 576, 1223, 1241, 1773, 1806, 1886, 1977
DpnII	GATC	9 cut(s)	492, 534, 574, 1221, 1239, 1771, 1804, 1884, 1975
DraIII	CACNNNGTG	1 cut(s)	800
DrdI	GACNNNNNNGTC	2 cut(s)	296, 909
DseDI	GACNNNNNNGTC	2 cut(s)	296, 909
EaeI	YGGCCR	1 cut(s)	1407
Eam1104I	CTCTTC	3 cut(s)	48, 714, 893
EarI	CTCTTC	3 cut(s)	48, 714, 893
EciI	GGCGGA	2 cut(s)	732, 1201
Ecl136II	GAGCTC	1 cut(s)	951
Eco130I	CCWWGG	1 cut(s)	1902
Eco24I	GRGCYC	1 cut(s)	953
Eco31I	GGTCTC	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	1992
Eco53kI	GAGCTC	1 cut(s)	951
Eco57I	CTGAAG	3 cut(s)	383, 737, 1132
Eco81I	CCTNAGG	2 cut(s)	431, 1714
Eco88I	CYCGRG	1 cut(s)	464
EcoICRI	GAGCTC	1 cut(s)	951
EcoO109I	RGGNCCY	2 cut(s)	427, 1992
EcoRII	CCWGG	2 cut(s)	405, 1485
EcoT14I	CCWWGG	1 cut(s)	1902
EcoT38I	GRGCYC	1 cut(s)	953
EgeI	GGCGCC	4 cut(s)	145, 923, 1620, 1820
EheI	GGCGCC	4 cut(s)	145, 923, 1620, 1820
ErhI	CCWWGG	1 cut(s)	1902
Esp3I	CGTCTC	1 cut(s)	355
FaeI	CATG	9 cut(s)	65, 159, 1197, 1377, 1595, 1618, 1633, 1778, 1906
FalI	AAGNNNNNCTT	4 cut(s)	790, 822, 809, 841
FaqI	GGGAC	4 cut(s)	290, 423, 1189, 1796
FatI	CATG	9 cut(s)	61, 155, 1193, 1373, 1591, 1614, 1629, 1774, 1902
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	9 cut(s)	68, 147, 249, 252, 472, 528, 767, 1176, 1870
FokI	GGATG	4 cut(s)	266, 1502, 1673, 1732
FriOI	GRGCYC	1 cut(s)	953
Fsp4HI	GCNGC	9 cut(s)	68, 147, 249, 252, 472, 528, 767, 1176, 1870
FspBI	CTAG	2 cut(s)	47, 680
GlaI	GCGC	8 cut(s)	145, 160, 783, 923, 1416, 1620, 1820, 1878
GluI	GCNGC	9 cut(s)	68, 147, 249, 252, 472, 528, 767, 1176, 1870
GsaI	CCCAGC	1 cut(s)	343
HaeII	RGCGCY	5 cut(s)	147, 785, 925, 1622, 1822
HaeIII	GGCC	5 cut(s)	330, 428, 474, 551, 1409
HapII	CCGG	8 cut(s)	126, 327, 531, 919, 954, 1134, 1622, 1701
HgaI	GACGC	3 cut(s)	25, 829, 915
HhaI	GCGC	8 cut(s)	146, 161, 784, 924, 1417, 1621, 1821, 1879
Hin1I	GRCGYC	6 cut(s)	144, 840, 907, 922, 1619, 1819
Hin1II	CATG	9 cut(s)	65, 159, 1197, 1377, 1595, 1618, 1633, 1778, 1906
Hin6I	GCGC	8 cut(s)	144, 159, 782, 922, 1415, 1619, 1819, 1877
HinP1I	GCGC	8 cut(s)	144, 159, 782, 922, 1415, 1619, 1819, 1877
HincII	GTYRAC	2 cut(s)	274, 1944
HindII	GTYRAC	2 cut(s)	274, 1944
HindIII	AAGCTT	1 cut(s)	1911
HinfI	GANTC	7 cut(s)	110, 411, 1061, 1128, 1272, 1933, 1958
HpaII	CCGG	8 cut(s)	126, 327, 531, 919, 954, 1134, 1622, 1701
HphI	GGTGA	7 cut(s)	112, 768, 783, 1178, 1198, 1654, 1730
Hpy166II	GTNNAC	6 cut(s)	274, 1282, 1306, 1390, 1604, 1944
Hpy188III	TCNNGA	8 cut(s)	415, 578, 1269, 1701, 1893, 1949, 1979, 1995
Hpy8I	GTNNAC	6 cut(s)	274, 1282, 1306, 1390, 1604, 1944
Hpy99I	CGWCG	6 cut(s)	374, 653, 845, 906, 909, 1220
HpyAV	CCTTC	8 cut(s)	711, 756, 892, 1329, 1345, 1543, 1760, 1818
HpyCH4III	ACNGT	1 cut(s)	1166
HpyCH4IV	ACGT	4 cut(s)	168, 348, 1404, 1733
HpyCH4V	TGCA	8 cut(s)	10, 53, 61, 138, 1093, 1197, 1493, 1670
HpyF10VI	GCNNNNNNNGC	6 cut(s)	16, 67, 135, 973, 1511, 1859
HpyF3I	CTNAG	8 cut(s)	431, 1267, 1714, 1814, 1854, 1863, 1881, 1929
HpySE526I	ACGT	4 cut(s)	168, 348, 1404, 1733
Hsp92I	GRCGYC	6 cut(s)	144, 840, 907, 922, 1619, 1819
Hsp92II	CATG	9 cut(s)	65, 159, 1197, 1377, 1595, 1618, 1633, 1778, 1906
HspAI	GCGC	8 cut(s)	144, 159, 782, 922, 1415, 1619, 1819, 1877
KasI	GGCGCC	4 cut(s)	143, 921, 1618, 1818
Kpn2I	TCCGGA	1 cut(s)	1700
KroI	GCCGGC	2 cut(s)	125, 1133
KroNI	GCCGGC	2 cut(s)	127, 1135
Kzo9I	GATC	9 cut(s)	492, 534, 574, 1221, 1239, 1771, 1804, 1884, 1975
Lsp1109I	GCAGC	4 cut(s)	79, 514, 1162, 1856
LweI	GCATC	3 cut(s)	445, 1162, 1480
MaeI	CTAG	2 cut(s)	47, 680
MaeII	ACGT	4 cut(s)	168, 348, 1404, 1733
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	9 cut(s)	494, 536, 576, 1223, 1241, 1773, 1806, 1886, 1977
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	9 cut(s)	492, 534, 574, 1221, 1239, 1771, 1804, 1884, 1975
MflI	RGATCY	2 cut(s)	1804, 1975
MhlI	GDGCHC	1 cut(s)	953
MlsI	TGGCCA	1 cut(s)	1409
MluCI	AATT	4 cut(s)	941, 1106, 1516, 1788
MluNI	TGGCCA	1 cut(s)	1409
Mly113I	GGCGCC	4 cut(s)	144, 922, 1619, 1819
MlyI	GAGTC	3 cut(s)	104, 405, 1070
MmeI	TCCRAC	8 cut(s)	138, 264, 672, 823, 834, 1026, 1275, 1668
Mox20I	TGGCCA	1 cut(s)	1409
MroI	TCCGGA	1 cut(s)	1700
MroNI	GCCGGC	2 cut(s)	125, 1133
MscI	TGGCCA	1 cut(s)	1409
MseI	TTAA	7 cut(s)	23, 639, 944, 1047, 1232, 1451, 1791
MslI	CAYNNNNRTG	1 cut(s)	485
Msp20I	TGGCCA	1 cut(s)	1409
MspA1I	CMGCKG	1 cut(s)	527
MspI	CCGG	8 cut(s)	126, 327, 531, 919, 954, 1134, 1622, 1701
MspR9I	CCNGG	3 cut(s)	407, 532, 1487
MvaI	CCWGG	2 cut(s)	407, 1487
MwoI	GCNNNNNNNGC	6 cut(s)	16, 67, 135, 973, 1511, 1859
NaeI	GCCGGC	2 cut(s)	127, 1135
NarI	GGCGCC	4 cut(s)	144, 922, 1619, 1819
NciI	CCSGG	1 cut(s)	532
NcoI	CCATGG	1 cut(s)	1902
NdeII	GATC	9 cut(s)	492, 534, 574, 1221, 1239, 1771, 1804, 1884, 1975
NgoMIV	GCCGGC	2 cut(s)	125, 1133
NlaIII	CATG	9 cut(s)	65, 159, 1197, 1377, 1595, 1618, 1633, 1778, 1906
NlaIV	GGNNCC	9 cut(s)	145, 229, 331, 489, 923, 1138, 1620, 1806, 1820
NmeAIII	GCCGAG	1 cut(s)	204
NmuCI	GTSAC	1 cut(s)	169
NspI	RCATGY	2 cut(s)	1197, 1595
NspV	TTCGAA	1 cut(s)	1083
PaeR7I	CTCGAG	1 cut(s)	464
PciI	ACATGT	1 cut(s)	1591
PcsI	WCGNNNNNNNCGW	2 cut(s)	837, 907
PdiI	GCCGGC	2 cut(s)	127, 1135
PfeI	GAWTC	4 cut(s)	1128, 1272, 1933, 1958
PflFI	GACNNNGTC	1 cut(s)	909
PflMI	CCANNNNNTGG	1 cut(s)	800
PfoI	TCCNGGA	1 cut(s)	1485
PkrI	GCNGC	9 cut(s)	69, 148, 250, 253, 473, 529, 768, 1177, 1871
PleI	GAGTC	3 cut(s)	104, 405, 1069
PluTI	GGCGCC	4 cut(s)	147, 925, 1622, 1822
PpsI	GAGTC	3 cut(s)	104, 405, 1069
PpuMI	RGGWCCY	1 cut(s)	1992
PscI	ACATGT	1 cut(s)	1591
PshBI	ATTAAT	1 cut(s)	1451
Psp124BI	GAGCTC	1 cut(s)	953
Psp5II	RGGWCCY	1 cut(s)	1992
Psp6I	CCWGG	2 cut(s)	405, 1485
PspFI	CCCAGC	1 cut(s)	339
PspGI	CCWGG	2 cut(s)	405, 1485
PspN4I	GGNNCC	9 cut(s)	145, 229, 331, 489, 923, 1138, 1620, 1806, 1820
PspPI	GGNCC	3 cut(s)	329, 427, 1992
PspPPI	RGGWCCY	1 cut(s)	1992
PspXI	VCTCGAGB	1 cut(s)	464
PstI	CTGCAG	1 cut(s)	1095
PsuI	RGATCY	2 cut(s)	1804, 1975
PsyI	GACNNNGTC	1 cut(s)	909
RsaI	GTAC	5 cut(s)	542, 612, 1603, 1628, 1921
RsaNI	GTAC	5 cut(s)	541, 611, 1602, 1627, 1920
RseI	CAYNNNNRTG	1 cut(s)	485
SacI	GAGCTC	1 cut(s)	953
SalI	GTCGAC	1 cut(s)	272
SaqAI	TTAA	7 cut(s)	23, 639, 944, 1047, 1232, 1451, 1791
SatI	GCNGC	9 cut(s)	68, 147, 249, 252, 472, 528, 767, 1176, 1870
Sau3AI	GATC	9 cut(s)	492, 534, 574, 1221, 1239, 1771, 1804, 1884, 1975
Sau96I	GGNCC	3 cut(s)	329, 427, 1992
SchI	GAGTC	3 cut(s)	104, 405, 1070
ScrFI	CCNGG	3 cut(s)	407, 532, 1487
SduI	GDGCHC	1 cut(s)	953
SfaNI	GCATC	3 cut(s)	445, 1162, 1480
SfcI	CTRYAG	1 cut(s)	1091
SfoI	GGCGCC	4 cut(s)	145, 923, 1620, 1820
Sfr274I	CTCGAG	1 cut(s)	464
SfuI	TTCGAA	1 cut(s)	1083
SgrAI	CRCCGGYG	1 cut(s)	918
SinI	GGWCC	1 cut(s)	1992
SlaI	CTCGAG	1 cut(s)	464
SmiMI	CAYNNNNRTG	1 cut(s)	485
SmlI	CTYRAG	3 cut(s)	464, 1498, 1908
SmoI	CTYRAG	3 cut(s)	464, 1498, 1908
Sse9I	AATT	4 cut(s)	941, 1106, 1516, 1788
SspDI	GGCGCC	4 cut(s)	143, 921, 1618, 1818
SspMI	CTAG	2 cut(s)	47, 680
SstI	GAGCTC	1 cut(s)	953
StyD4I	CCNGG	3 cut(s)	405, 530, 1485
StyI	CCWWGG	1 cut(s)	1902
TaaI	ACNGT	1 cut(s)	1166
TaiI	ACGT	4 cut(s)	171, 351, 1407, 1736
TaqI	TCGA	9 cut(s)	96, 273, 465, 561, 579, 624, 1083, 1557, 1950
TaqII	GACCGA	1 cut(s)	1511
TasI	AATT	4 cut(s)	941, 1106, 1516, 1788
TatI	WGTACW	1 cut(s)	1626
TauI	GCSGC	5 cut(s)	149, 251, 254, 474, 769
TfiI	GAWTC	4 cut(s)	1128, 1272, 1933, 1958
Tru1I	TTAA	7 cut(s)	23, 639, 944, 1047, 1232, 1451, 1791
Tru9I	TTAA	7 cut(s)	23, 639, 944, 1047, 1232, 1451, 1791
TscAI	CASTG	1 cut(s)	1062
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	4 cut(s)	67, 527, 1175, 1869
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	5 cut(s)	17, 817, 1734, 1737, 1950
TspGWI	ACGGA	1 cut(s)	286
TspRI	CASTG	1 cut(s)	1062
Tth111I	GACNNNGTC	1 cut(s)	909
Van91I	CCANNNNNTGG	1 cut(s)	800
VpaK11BI	GGWCC	1 cut(s)	1992
VspI	ATTAAT	1 cut(s)	1451
XceI	RCATGY	2 cut(s)	1197, 1595
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1522
XhoI	CTCGAG	1 cut(s)	464
XmiI	GTMKAC	1 cut(s)	273
XspI	CTAG	2 cut(s)	47, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.