Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008355

Physical Location & Seq

Genomic Coordinates Forward (+)

34057454 .. 34061013

Gene Structure 3560 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00241840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1878 bp

ATGACAGCACTTACGAAGGCCAAAAGATGGACTTGCGTACATGAAGATGCAGATGATGCTGTTAATGGTAATGGTGGTCTCTCTTCTAGTTGCAGTCGTGCATGGGGCAGCAGAGCTACTTGGAAAACAACCAGCTCGACTGCGACAACGACTCCAACATCACCGCCGGCTACATCTGCAACGGCGCCGCTCCCTCATGCGCCTCCTACGTCACTTTCCTCTCCATCAGCCACTACAACACCCCCACCTCAATCGCCTCCCCTCCTCGGCTCCACCCCCTCCTATATCGCCGCCGCCAACAACATCTCCGACGTCGACCCCATCCCCACCGACACCTCCGTCCTCGTCCCCCTCAACTGCTCCTGCTCCGGCCCCTACTCCCAGCACAACGTCTCCTACACCCTGAAGCCCGACGACACCTACTTCGTCATCGCCAACAACACCTACCAGGGACTCACGACCTGTCAGGCCCTCAGGCATCAGAACCCCTACGACCCTCTGAACCTCGAGGGCGGCTATGTCATAGAGGTTCCGATCAGGTGTGCTTGCCCCACCGCCAAACAGACAGCCGCCGGGATCAAGTACCTGCTGGCCTACCTCATCGACTTGGACGACGATCTAGACAAAATAGCCATACGCTTCGCCGTAGATGTACCCACTTTGCTCGAAGCAAACAACTTTAAGACCTCCGACGACGTCATCTATCCCTACCAAGCTGTTCTAGTTCCTCTCACAACCAAACCTTCTCCTCTTCAACTGAGGTATCCAAGCTCTCCTCCACCTCCGCCTTCTCCTCCTCCTCCTCTACCGCCGTCATCACCAGCGCCTCCCTCACCACCAAGTGGGTCTTCCAACAAGAAGTGGGTCTTCATCGGCGTCGGAGCTGGCTGTCTCCTCCTACTTATATCTATCTTCGCCTTCCTCTTCTTCTCAAAACGACGACGCCGTCAGCACCGGCACCACTCTCCCAACCACAAATTAAAGAGCTCCGGTAATAACACGCAGAACTCGCTACCCACCACCACCACCACCACCTCCAACGACACAACAACATCGTGGTCGCCAATATCCACCAACGGGCTTAAAAACGCAGTGGAGTCTTTGACAGCTTACAAGTTCGAAGACCTGCAGAACGCCACTCAATTCTTCAACGAAGCCAACAGAATCGCCGGCTCCTCCGTCTTCAGAGCTACCTTTGACGGCGAAGATGCTGCCGTCAAGGGTAACATTACTCCTCTGTCATGGAAGCAGAGAGTTCACATTGCTAATGACGTGGCCAATGCGCTCTACTATCTACACAACTTCACACACCCTCCATTAATCCACAAGAACCTGAACACCAGCAACATTCTCCTGGATGCAAACTTGAGAGCCAAGGTTGCCAATTTCGGTCTGGCAAGATCTGTGGATTTGGGGAAGGAAGTCGAAGATGGACAGGGATTTCAACTGACGAGACATGTGGTGGGTACACGGGGCTACATGGCGCCGGAGTACATGGAAGACGGGGTGATTACTCCGAAACTGGATGTGTTTGCATTTGGGGTTGTGTTGTTGGAGCTATTGTCCGGAAGACCAGCCTCAGGTGACGAAGAATACACGTTGCTCTATTCATCCATTAGTGGGGTGCTTGAAGGATATCATGTGGGGGACAAAATTAAAGGGTTTATGGATCCTTCTCTGAGGCGCCAGTATCCTTTGGAGCTGGCGTTTTCAATGGCTCAGCTCGCTAAGAGCTGCGTTGCGCCTCAGATCAACTCACGACCCACCATGGCTCAAGCTTCTGGTACTCTGTCTAAGATTCTTTCGTCAACTCTCGACTGGGATTCATCTAAAGCTGTGGATCTTGAACATTCAAGGTCACTGAGTCATGGCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009719 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0035690 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071323 GO:0071417 GO:0071495 GO:0071704 GO:0071944 GO:0097367 GO:0140096 GO:1901564 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

625

Amino Acids

67.48

Weight (kDa)

7.63

Isoelectric Point (pI)

53.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LysM1_NFP_LYK	PF23446	88 - 122	4.2e-07	NFP/LYK LysM1 domain
LysM2_CERK1_LYK3_4_5	PF23472	126 - 180	3.7e-25	LYK3/4/5 LysM2 domain
LysM2_NFP	PF23457	127 - 179	3.3e-08	NFP LysM2 domain
LysM3_LYK4_5	PF23473	195 - 244	5.4e-12	LYK4/5 LysM3 domain
PK_Tyr_Ser-Thr	PF07714	411 - 593	3.6e-21	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	413 - 593	3.1e-23	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33580
fragaria_vesca	FvH4_5g26710 FvH4_5g26740
prunus_persica	Prupe.5G001000_v2.0.a1
pyrus_communis	pycom16g26340
rosa_chinensis	RchiOBHm_Chr7g0217591 RchiOBHm_Chr7g0217601
rosa_laevigata	RLG00000002457 RLG00000002458
rosa_multiflora	Rmu_co8386267.1_g000001 Rmu_sc0006161.1_g000002 Rmu_ssc0000225.1_g000002
rosa_roxburghii	Rroxscaffold_3G00241810 Rroxscaffold_3G00241840
rosa_rugosa	Rorug07G0170300 Rorug07G0170300
rosa_samantha	Rh7AG310400 Rh7BG301700 Rh7CG329400 Rh7DG309800 Rh7DG310500
rosa_wichuraiana	Rw7G026310 Rw7G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	338, 945
AatII	GACGTC	2 cut(s)	315, 699
AbsI	CCTCGAGG	1 cut(s)	506
Acc36I	ACCTGC	2 cut(s)	594, 1134
AccB1I	GGYRCC	4 cut(s)	184, 957, 1483, 1683
AccB7I	CCANNNNNTGG	2 cut(s)	27, 842
AccBSI	CCGCTC	1 cut(s)	190
AccI	GTMKAC	1 cut(s)	315
AccIII	TCCGGA	1 cut(s)	1565
AciI	CCGC	9 cut(s)	164, 188, 291, 294, 513, 555, 570, 785, 809
AclWI	GGATC	4 cut(s)	584, 1664, 1677, 1848
AcoI	YGGCCR	1 cut(s)	1275
AcuI	CTGAAG	2 cut(s)	425, 1168
AcyI	GRCGYC	7 cut(s)	185, 312, 696, 876, 943, 1484, 1684
AdeI	CACNNNGTG	1 cut(s)	842
AfaI	GTAC	6 cut(s)	39, 584, 654, 1468, 1493, 1786
AfiI	CCNNNNNNNGG	6 cut(s)	27, 266, 842, 1077, 1580, 1620
AflIII	ACRYGT	2 cut(s)	1456, 1596
AgsI	TTSAA	7 cut(s)	755, 1150, 1445, 1631, 1713, 1847, 1854
AjiI	CACGTC	1 cut(s)	1273
AjnI	CCWGG	2 cut(s)	447, 1353
AjuI	GAANNNNNNNTTGG	2 cut(s)	832, 864
Alw21I	GWGCWC	1 cut(s)	989
Alw26I	GTCTC	4 cut(s)	83, 397, 896, 1447
AlwI	GGATC	4 cut(s)	584, 1664, 1677, 1848
Ama87I	CYCGRG	1 cut(s)	506
Aor13HI	TCCGGA	1 cut(s)	1565
AoxI	GGCC	5 cut(s)	18, 370, 468, 591, 1275
ApeKI	GCWGC	3 cut(s)	108, 1211, 1734
ArsI	GACNNNNNNTTYG	2 cut(s)	407, 439
AseI	ATTAAT	1 cut(s)	1319
AspLEI	GCGC	7 cut(s)	187, 202, 826, 1285, 1486, 1686, 1744
AspS9I	GGNCC	2 cut(s)	371, 469
AsuC2I	CCSGG	1 cut(s)	574
AsuHPI	GGTGA	5 cut(s)	153, 810, 825, 1519, 1595
AsuII	TTCGAA	1 cut(s)	1119
AvaI	CYCGRG	1 cut(s)	506
AxyI	CCTNAGG	2 cut(s)	473, 1579
BaeI	ACNNNNGTAYC	2 cut(s)	746, 779
BalI	TGGCCA	1 cut(s)	1277
BamHI	GGATCC	1 cut(s)	1669
BanI	GGYRCC	4 cut(s)	184, 957, 1483, 1683
BanII	GRGCYC	1 cut(s)	989
BbsI	GAAGAC	6 cut(s)	840, 859, 1128, 1174, 1506, 1576
Bbv12I	GWGCWC	1 cut(s)	989
BbvI	GCAGC	3 cut(s)	120, 1198, 1721
BccI	CCATC	4 cut(s)	21, 232, 329, 1424
BceAI	ACGGC	6 cut(s)	198, 629, 796, 930, 1199, 1216
BcgI	CGANNNNNNTGC	2 cut(s)	1193, 1227
BciT130I	CCWGG	2 cut(s)	449, 1355
BciVI	GTATCC	2 cut(s)	774, 1701
BcnI	CCSGG	1 cut(s)	574
BcoDI	GTCTC	4 cut(s)	83, 397, 896, 1447
BfaI	CTAG	3 cut(s)	87, 620, 722
BfmI	CTRYAG	1 cut(s)	1127
BfoI	RGCGCY	4 cut(s)	188, 827, 1487, 1687
BfuAI	ACCTGC	2 cut(s)	594, 1134
BfuI	GTATCC	2 cut(s)	774, 1701
BglII	AGATCT	1 cut(s)	1400
BisI	GCNGC	8 cut(s)	109, 188, 291, 294, 514, 570, 1212, 1735
BlpI	GCTNAGC	1 cut(s)	1719
BlsI	GCNGC	8 cut(s)	110, 189, 292, 295, 515, 571, 1213, 1736
Bme1390I	CCNGG	3 cut(s)	449, 574, 1355
BmeT110I	CYCGRG	1 cut(s)	506
BmgBI	CACGTC	1 cut(s)	1273
BmgT120I	GGNCC	2 cut(s)	371, 469
BmiI	GGNNCC	9 cut(s)	186, 271, 373, 531, 959, 1174, 1485, 1671, 1685
BmrFI	CCNGG	3 cut(s)	449, 574, 1355
BmrI	ACTGGG	1 cut(s)	1828
BmsI	GCATC	5 cut(s)	37, 46, 487, 1198, 1348
BmuI	ACTGGG	1 cut(s)	1828
BpiI	GAAGAC	6 cut(s)	840, 859, 1128, 1174, 1506, 1576
Bpu1102I	GCTNAGC	1 cut(s)	1719
Bpu14I	TTCGAA	1 cut(s)	1119
BpuEI	CTTGAG	2 cut(s)	1387, 1758
BpuMI	CCSGG	1 cut(s)	574
BsaHI	GRCGYC	7 cut(s)	185, 312, 696, 876, 943, 1484, 1684
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	4 cut(s)	265, 448, 1374, 1767
BsaWI	WCCGGW	2 cut(s)	989, 1565
Bsc4I	CCNNNNNNNGG	6 cut(s)	27, 266, 842, 1077, 1580, 1620
Bse118I	RCCGGY	3 cut(s)	166, 954, 1169
Bse1I	ACTGG	3 cut(s)	1527, 1687, 1823
Bse21I	CCTNAGG	2 cut(s)	473, 1579
Bse3DI	GCAATG	1 cut(s)	1260
BseAI	TCCGGA	1 cut(s)	1565
BseBI	CCWGG	2 cut(s)	449, 1355
BseDI	CCNNGG	4 cut(s)	265, 448, 1374, 1767
BseGI	GGATG	4 cut(s)	321, 1363, 1531, 1610
BseLI	CCNNNNNNNGG	6 cut(s)	27, 266, 842, 1077, 1580, 1620
BseMI	GCAATG	1 cut(s)	1260
BseMII	CTCAG	7 cut(s)	487, 749, 1593, 1670, 1733, 1760, 1853
BseNI	ACTGG	3 cut(s)	1527, 1687, 1823
BseXI	GCAGC	3 cut(s)	120, 1198, 1721
BseYI	CCCAGC	1 cut(s)	381
BshFI	GGCC	5 cut(s)	20, 372, 470, 593, 1277
BshNI	GGYRCC	4 cut(s)	184, 957, 1483, 1683
BsiHKAI	GWGCWC	1 cut(s)	989
BsiHKCI	CYCGRG	1 cut(s)	506
BsiSI	CCGG	8 cut(s)	167, 369, 573, 955, 990, 1170, 1487, 1566
BslFI	GGGAC	3 cut(s)	332, 465, 1661
BslI	CCNNNNNNNGG	6 cut(s)	27, 266, 842, 1077, 1580, 1620
BsmAI	GTCTC	4 cut(s)	83, 397, 896, 1447
BsmBI	CGTCTC	1 cut(s)	397
BsmFI	GGGAC	3 cut(s)	332, 465, 1661
BsnI	GGCC	5 cut(s)	20, 372, 470, 593, 1277
Bso31I	GGTCTC	1 cut(s)	83
BsoBI	CYCGRG	1 cut(s)	506
Bsp119I	TTCGAA	1 cut(s)	1119
Bsp1286I	GDGCHC	1 cut(s)	989
Bsp13I	TCCGGA	1 cut(s)	1565
Bsp143I	GATC	7 cut(s)	534, 576, 616, 1400, 1669, 1749, 1840
Bsp1720I	GCTNAGC	1 cut(s)	1719
Bsp19I	CCATGG	1 cut(s)	1767
BspACI	CCGC	9 cut(s)	164, 188, 291, 294, 513, 555, 570, 785, 809
BspANI	GGCC	5 cut(s)	20, 372, 470, 593, 1277
BspCNI	CTCAG	7 cut(s)	486, 750, 1592, 1671, 1732, 1759, 1854
BspEI	TCCGGA	1 cut(s)	1565
BspLI	GGNNCC	9 cut(s)	186, 271, 373, 531, 959, 1174, 1485, 1671, 1685
BspMAI	CTGCAG	1 cut(s)	1131
BspMI	ACCTGC	2 cut(s)	594, 1134
BspPI	GGATC	4 cut(s)	584, 1664, 1677, 1848
BspT104I	TTCGAA	1 cut(s)	1119
BspT107I	GGYRCC	4 cut(s)	184, 957, 1483, 1683
BspTNI	GGTCTC	1 cut(s)	83
BsrBI	CCGCTC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	1260
BsrFI	RCCGGY	3 cut(s)	166, 954, 1169
BsrI	ACTGG	3 cut(s)	1527, 1687, 1823
BssAI	RCCGGY	3 cut(s)	166, 954, 1169
BssECI	CCNNGG	4 cut(s)	265, 448, 1374, 1767
BssMI	GATC	7 cut(s)	534, 576, 616, 1400, 1669, 1749, 1840
BssNI	GRCGYC	7 cut(s)	185, 312, 696, 876, 943, 1484, 1684
BssT1I	CCWWGG	2 cut(s)	1374, 1767
Bst2UI	CCWGG	2 cut(s)	449, 1355
Bst6I	CTCTTC	3 cut(s)	88, 756, 929
BstACI	GRCGYC	7 cut(s)	185, 312, 696, 876, 943, 1484, 1684
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstBI	TTCGAA	1 cut(s)	1119
BstC8I	GCNNGC	7 cut(s)	168, 547, 591, 886, 1171, 1704, 1725
BstDEI	CTNAG	9 cut(s)	473, 758, 1579, 1679, 1719, 1728, 1746, 1794, 1862
BstDSI	CCRYGG	1 cut(s)	1767
BstF5I	GGATG	4 cut(s)	321, 1363, 1531, 1610
BstH2I	RGCGCY	4 cut(s)	188, 827, 1487, 1687
BstHHI	GCGC	7 cut(s)	187, 202, 826, 1285, 1486, 1686, 1744
BstKTI	GATC	7 cut(s)	537, 579, 619, 1403, 1672, 1752, 1843
BstMAI	GTCTC	4 cut(s)	83, 397, 896, 1447
BstMBI	GATC	7 cut(s)	534, 576, 616, 1400, 1669, 1749, 1840
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 176, 1009, 1379, 1724
BstNI	CCWGG	2 cut(s)	449, 1355
BstNSI	RCATGY	1 cut(s)	1460
BstSCI	CCNGG	3 cut(s)	447, 572, 1353
BstSFI	CTRYAG	1 cut(s)	1127
BstV1I	GCAGC	3 cut(s)	120, 1198, 1721
BstV2I	GAAGAC	6 cut(s)	840, 859, 1128, 1174, 1506, 1576
BstX2I	RGATCY	3 cut(s)	1400, 1669, 1840
BstYI	RGATCY	3 cut(s)	1400, 1669, 1840
Bsu36I	CCTNAGG	2 cut(s)	473, 1579
BsuI	GTATCC	2 cut(s)	774, 1701
BsuRI	GGCC	5 cut(s)	20, 372, 470, 593, 1277
BtgI	CCRYGG	1 cut(s)	1767
BtgZI	GCGATG	1 cut(s)	415
BtrI	CACGTC	1 cut(s)	1273
BtsCI	GGATG	4 cut(s)	321, 1363, 1531, 1610
BtsI	GCAGTG	1 cut(s)	1098
BtsIMutI	CAGTG	2 cut(s)	1098, 1859
BveI	ACCTGC	2 cut(s)	594, 1134
Cac8I	GCNNGC	7 cut(s)	168, 547, 591, 886, 1171, 1704, 1725
CfoI	GCGC	7 cut(s)	187, 202, 826, 1285, 1486, 1686, 1744
Cfr10I	RCCGGY	3 cut(s)	166, 954, 1169
Cfr13I	GGNCC	2 cut(s)	371, 469
CseI	GACGC	2 cut(s)	865, 951
Csp6I	GTAC	6 cut(s)	38, 583, 653, 1467, 1492, 1785
CspCI	CAANNNNNGTGG	2 cut(s)	1386, 1421
CviQI	GTAC	6 cut(s)	38, 583, 653, 1467, 1492, 1785
DdeI	CTNAG	9 cut(s)	473, 758, 1579, 1679, 1719, 1728, 1746, 1794, 1862
DinI	GGCGCC	3 cut(s)	186, 1485, 1685
DpnI	GATC	7 cut(s)	536, 578, 618, 1402, 1671, 1751, 1842
DpnII	GATC	7 cut(s)	534, 576, 616, 1400, 1669, 1749, 1840
DraIII	CACNNNGTG	1 cut(s)	842
DrdI	GACNNNNNNGTC	2 cut(s)	338, 945
DseDI	GACNNNNNNGTC	2 cut(s)	338, 945
EaeI	YGGCCR	1 cut(s)	1275
Eam1104I	CTCTTC	3 cut(s)	88, 756, 929
EarI	CTCTTC	3 cut(s)	88, 756, 929
EciI	GGCGGA	1 cut(s)	774
Ecl136II	GAGCTC	1 cut(s)	987
Eco130I	CCWWGG	2 cut(s)	1374, 1767
Eco24I	GRGCYC	1 cut(s)	989
Eco31I	GGTCTC	1 cut(s)	83
Eco32I	GATATC	1 cut(s)	1637
Eco53kI	GAGCTC	1 cut(s)	987
Eco57I	CTGAAG	2 cut(s)	425, 1168
Eco81I	CCTNAGG	2 cut(s)	473, 1579
Eco88I	CYCGRG	1 cut(s)	506
EcoICRI	GAGCTC	1 cut(s)	987
EcoO109I	RGGNCCY	1 cut(s)	469
EcoRII	CCWGG	2 cut(s)	447, 1353
EcoRV	GATATC	1 cut(s)	1637
EcoT14I	CCWWGG	2 cut(s)	1374, 1767
EcoT38I	GRGCYC	1 cut(s)	989
EgeI	GGCGCC	3 cut(s)	186, 1485, 1685
EheI	GGCGCC	3 cut(s)	186, 1485, 1685
ErhI	CCWWGG	2 cut(s)	1374, 1767
Esp3I	CGTCTC	1 cut(s)	397
FalI	AAGNNNNNCTT	6 cut(s)	16, 48, 832, 864, 851, 883
FaqI	GGGAC	3 cut(s)	332, 465, 1661
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	8 cut(s)	109, 188, 291, 294, 514, 570, 1212, 1735
FokI	GGATG	4 cut(s)	308, 1370, 1538, 1597
FriOI	GRGCYC	1 cut(s)	989
Fsp4HI	GCNGC	8 cut(s)	109, 188, 291, 294, 514, 570, 1212, 1735
FspBI	CTAG	3 cut(s)	87, 620, 722
GlaI	GCGC	7 cut(s)	186, 201, 825, 1284, 1485, 1685, 1743
GluI	GCNGC	8 cut(s)	109, 188, 291, 294, 514, 570, 1212, 1735
GsaI	CCCAGC	1 cut(s)	385
HaeII	RGCGCY	4 cut(s)	188, 827, 1487, 1687
HaeIII	GGCC	5 cut(s)	20, 372, 470, 593, 1277
HapII	CCGG	8 cut(s)	167, 369, 573, 955, 990, 1170, 1487, 1566
HgaI	GACGC	2 cut(s)	865, 951
HhaI	GCGC	7 cut(s)	187, 202, 826, 1285, 1486, 1686, 1744
Hin1I	GRCGYC	7 cut(s)	185, 312, 696, 876, 943, 1484, 1684
Hin6I	GCGC	7 cut(s)	185, 200, 824, 1283, 1484, 1684, 1742
HinP1I	GCGC	7 cut(s)	185, 200, 824, 1283, 1484, 1684, 1742
HincII	GTYRAC	2 cut(s)	316, 1809
HindII	GTYRAC	2 cut(s)	316, 1809
HindIII	AAGCTT	1 cut(s)	1776
HinfI	GANTC	7 cut(s)	151, 453, 1097, 1164, 1798, 1823, 1864
HpaII	CCGG	8 cut(s)	167, 369, 573, 955, 990, 1170, 1487, 1566
HphI	GGTGA	5 cut(s)	153, 810, 825, 1519, 1595
Hpy166II	GTNNAC	4 cut(s)	316, 1258, 1469, 1809
Hpy188III	TCNNGA	6 cut(s)	457, 620, 1566, 1758, 1814, 1844
Hpy8I	GTNNAC	4 cut(s)	316, 1258, 1469, 1809
Hpy99I	CGWCG	9 cut(s)	314, 317, 416, 617, 695, 698, 881, 942, 945
HpyAV	CCTTC	7 cut(s)	10, 753, 798, 928, 1411, 1625, 1683
HpyCH4IV	ACGT	6 cut(s)	209, 312, 390, 696, 1272, 1598
HpyCH4V	TGCA	7 cut(s)	50, 93, 101, 179, 1129, 1361, 1535
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 176, 1009, 1379, 1724
HpyF3I	CTNAG	9 cut(s)	473, 758, 1579, 1679, 1719, 1728, 1746, 1794, 1862
HpySE526I	ACGT	6 cut(s)	209, 312, 390, 696, 1272, 1598
Hsp92I	GRCGYC	7 cut(s)	185, 312, 696, 876, 943, 1484, 1684
HspAI	GCGC	7 cut(s)	185, 200, 824, 1283, 1484, 1684, 1742
KasI	GGCGCC	3 cut(s)	184, 1483, 1683
Kpn2I	TCCGGA	1 cut(s)	1565
KroI	GCCGGC	2 cut(s)	166, 1169
KroNI	GCCGGC	2 cut(s)	168, 1171
Kzo9I	GATC	7 cut(s)	534, 576, 616, 1400, 1669, 1749, 1840
LmnI	GCTCC	9 cut(s)	195, 275, 365, 371, 881, 992, 1178, 1555, 1699
Lsp1109I	GCAGC	3 cut(s)	120, 1198, 1721
LweI	GCATC	5 cut(s)	37, 46, 487, 1198, 1348
MaeI	CTAG	3 cut(s)	87, 620, 722
MaeII	ACGT	6 cut(s)	209, 312, 390, 696, 1272, 1598
MaeIII	GTNAC	4 cut(s)	210, 1223, 1583, 1857
MalI	GATC	7 cut(s)	536, 578, 618, 1402, 1671, 1751, 1842
MbiI	CCGCTC	1 cut(s)	190
MboI	GATC	7 cut(s)	534, 576, 616, 1400, 1669, 1749, 1840
MflI	RGATCY	3 cut(s)	1400, 1669, 1840
MhlI	GDGCHC	1 cut(s)	989
MlsI	TGGCCA	1 cut(s)	1277
MluCI	AATT	4 cut(s)	977, 1142, 1384, 1653
MluNI	TGGCCA	1 cut(s)	1277
Mly113I	GGCGCC	3 cut(s)	185, 1484, 1684
MlyI	GAGTC	4 cut(s)	145, 447, 1106, 1873
MmeI	TCCRAC	7 cut(s)	179, 333, 714, 859, 876, 1062, 1533
Mox20I	TGGCCA	1 cut(s)	1277
MroI	TCCGGA	1 cut(s)	1565
MroNI	GCCGGC	2 cut(s)	166, 1169
MscI	TGGCCA	1 cut(s)	1277
MseI	TTAA	6 cut(s)	63, 681, 980, 1083, 1319, 1656
MslI	CAYNNNNRTG	1 cut(s)	45
Msp20I	TGGCCA	1 cut(s)	1277
MspI	CCGG	8 cut(s)	167, 369, 573, 955, 990, 1170, 1487, 1566
MspR9I	CCNGG	3 cut(s)	449, 574, 1355
MvaI	CCWGG	2 cut(s)	449, 1355
MwoI	GCNNNNNNNGC	5 cut(s)	56, 176, 1009, 1379, 1724
NaeI	GCCGGC	2 cut(s)	168, 1171
NarI	GGCGCC	3 cut(s)	185, 1484, 1684
NciI	CCSGG	1 cut(s)	574
NcoI	CCATGG	1 cut(s)	1767
NdeII	GATC	7 cut(s)	534, 576, 616, 1400, 1669, 1749, 1840
NgoMIV	GCCGGC	2 cut(s)	166, 1169
NlaIV	GGNNCC	9 cut(s)	186, 271, 373, 531, 959, 1174, 1485, 1671, 1685
NmeAIII	GCCGAG	1 cut(s)	246
NmuCI	GTSAC	3 cut(s)	210, 1583, 1857
NspI	RCATGY	1 cut(s)	1460
NspV	TTCGAA	1 cut(s)	1119
PaeR7I	CTCGAG	1 cut(s)	506
PciI	ACATGT	1 cut(s)	1456
PcsI	WCGNNNNNNNCGW	2 cut(s)	609, 943
PdiI	GCCGGC	2 cut(s)	168, 1171
PfeI	GAWTC	3 cut(s)	1164, 1798, 1823
PflFI	GACNNNGTC	2 cut(s)	695, 945
PflMI	CCANNNNNTGG	2 cut(s)	27, 842
PfoI	TCCNGGA	1 cut(s)	1353
PkrI	GCNGC	8 cut(s)	110, 189, 292, 295, 515, 571, 1213, 1736
PleI	GAGTC	4 cut(s)	145, 447, 1105, 1872
PluTI	GGCGCC	3 cut(s)	188, 1487, 1687
PpsI	GAGTC	4 cut(s)	145, 447, 1105, 1872
PscI	ACATGT	1 cut(s)	1456
PshBI	ATTAAT	1 cut(s)	1319
Psp124BI	GAGCTC	1 cut(s)	989
Psp6I	CCWGG	2 cut(s)	447, 1353
PspFI	CCCAGC	1 cut(s)	381
PspGI	CCWGG	2 cut(s)	447, 1353
PspN4I	GGNNCC	9 cut(s)	186, 271, 373, 531, 959, 1174, 1485, 1671, 1685
PspPI	GGNCC	2 cut(s)	371, 469
PspXI	VCTCGAGB	1 cut(s)	506
PstI	CTGCAG	1 cut(s)	1131
PsuI	RGATCY	3 cut(s)	1400, 1669, 1840
PsyI	GACNNNGTC	2 cut(s)	695, 945
RsaI	GTAC	6 cut(s)	39, 584, 654, 1468, 1493, 1786
RsaNI	GTAC	6 cut(s)	38, 583, 653, 1467, 1492, 1785
RseI	CAYNNNNRTG	1 cut(s)	45
SacI	GAGCTC	1 cut(s)	989
SalI	GTCGAC	1 cut(s)	314
SaqAI	TTAA	6 cut(s)	63, 681, 980, 1083, 1319, 1656
SatI	GCNGC	8 cut(s)	109, 188, 291, 294, 514, 570, 1212, 1735
Sau3AI	GATC	7 cut(s)	534, 576, 616, 1400, 1669, 1749, 1840
Sau96I	GGNCC	2 cut(s)	371, 469
SchI	GAGTC	4 cut(s)	145, 447, 1106, 1873
ScrFI	CCNGG	3 cut(s)	449, 574, 1355
SduI	GDGCHC	1 cut(s)	989
SfaNI	GCATC	5 cut(s)	37, 46, 487, 1198, 1348
SfcI	CTRYAG	1 cut(s)	1127
SfoI	GGCGCC	3 cut(s)	186, 1485, 1685
Sfr274I	CTCGAG	1 cut(s)	506
SfuI	TTCGAA	1 cut(s)	1119
SlaI	CTCGAG	1 cut(s)	506
SmiMI	CAYNNNNRTG	1 cut(s)	45
SmlI	CTYRAG	3 cut(s)	506, 1366, 1773
SmoI	CTYRAG	3 cut(s)	506, 1366, 1773
Sse9I	AATT	4 cut(s)	977, 1142, 1384, 1653
SsiI	CCGC	9 cut(s)	164, 188, 291, 294, 513, 555, 570, 785, 809
SspDI	GGCGCC	3 cut(s)	184, 1483, 1683
SspMI	CTAG	3 cut(s)	87, 620, 722
SstI	GAGCTC	1 cut(s)	989
StyD4I	CCNGG	3 cut(s)	447, 572, 1353
StyI	CCWWGG	2 cut(s)	1374, 1767
TaiI	ACGT	6 cut(s)	212, 315, 393, 699, 1275, 1601
TaqI	TCGA	8 cut(s)	137, 315, 507, 603, 666, 1119, 1425, 1815
TaqII	GACCGA	1 cut(s)	1379
TasI	AATT	4 cut(s)	977, 1142, 1384, 1653
TatI	WGTACW	1 cut(s)	1491
TauI	GCSGC	5 cut(s)	190, 293, 296, 516, 572
TfiI	GAWTC	3 cut(s)	1164, 1798, 1823
Tru1I	TTAA	6 cut(s)	63, 681, 980, 1083, 1319, 1656
Tru9I	TTAA	6 cut(s)	63, 681, 980, 1083, 1319, 1656
TscAI	CASTG	2 cut(s)	1098, 1866
TseFI	GTSAC	3 cut(s)	210, 1583, 1857
TseI	GCWGC	3 cut(s)	108, 1211, 1734
Tsp45I	GTSAC	3 cut(s)	210, 1583, 1857
TspDTI	ATGAA	4 cut(s)	57, 859, 1599, 1815
TspGWI	ACGGA	2 cut(s)	328, 1168
TspRI	CASTG	2 cut(s)	1098, 1866
Tth111I	GACNNNGTC	2 cut(s)	695, 945
Van91I	CCANNNNNTGG	2 cut(s)	27, 842
VspI	ATTAAT	1 cut(s)	1319
XbaI	TCTAGA	1 cut(s)	619
XceI	RCATGY	1 cut(s)	1460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1390
XhoI	CTCGAG	1 cut(s)	506
XmiI	GTMKAC	1 cut(s)	315
XspI	CTAG	3 cut(s)	87, 620, 722
ZraI	GACGTC	2 cut(s)	313, 697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.