Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000225.1

Orthogroup ID

OG0008355

Physical Location & Seq

Genomic Coordinates Reverse (-)

4239 .. 5060

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000225.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atgacaggcgacgtggcactctccggcgacgagatcaacattctgaagcggatcaatcactccaacattatcagactctctggattctgtgtccaccaaggaaacacttacctcgtttacgagttcgctccttctggctcactcattgattgtcttcataagggcgccattagtcctctgtcatggaagcagagagttcagattgctagtgacgtggccagtgcgctcaactatatacacaatttcacagagcctccattaatccacaagaacctcaacagcagcaacattctcctggatgcaaacttgagagccaaggttgccaattttggtctggcaagagctgtcgagttggataacgaagacgaagatggagaacagggatttcaacagacgaggcacgtggtgggtacgaggggctacatggcgccggagtacattgaaaacggagtgatcactccgaagctcgatgtgtttgcatttggggttgttttgttggagctcttgtctggaagaagagcctctggtgatgaagagcacacattgctgtatgagtccattagtggggtgcttgaaggagatgatgtgagggacaaaattaaagagtttatggatccttctctgaaaagcaagtaccctttggacctggcgttttcgatggctcagctcgctaagagctgtgttgcgccccagatcaacaatcgacccacaatggctcaagcttcggggactctatcgaagattctttcgtcgactctagactgggatccatctgatgctgaggatcttagagattcaaggtcactcagttatggcagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009719 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0035690 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071323 GO:0071417 GO:0071495 GO:0071704 GO:0071944 GO:0097367 GO:0140096 GO:1901564 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

273

Amino Acids

30.04

Weight (kDa)

5.17

Isoelectric Point (pI)

44.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33580
fragaria_vesca	FvH4_5g26710 FvH4_5g26740
prunus_persica	Prupe.5G001000_v2.0.a1
pyrus_communis	pycom16g26340
rosa_chinensis	RchiOBHm_Chr7g0217591 RchiOBHm_Chr7g0217601
rosa_laevigata	RLG00000002457 RLG00000002458
rosa_multiflora	Rmu_co8386267.1_g000001 Rmu_sc0006161.1_g000002 Rmu_ssc0000225.1_g000002
rosa_roxburghii	Rroxscaffold_3G00241810 Rroxscaffold_3G00241840
rosa_rugosa	Rorug07G0170300 Rorug07G0170300
rosa_samantha	Rh7AG310400 Rh7BG301700 Rh7CG329400 Rh7DG309800 Rh7DG310500
rosa_wichuraiana	Rw7G026310 Rw7G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	164, 427
AccI	GTMKAC	1 cut(s)	752
AciI	CCGC	1 cut(s)	49
AclWI	GGATC	6 cut(s)	59, 608, 621, 761, 774, 792
AcoI	YGGCCR	1 cut(s)	216
AcuI	CTGAAG	1 cut(s)	65
AcvI	CACGTG	1 cut(s)	403
AcyI	GRCGYC	2 cut(s)	165, 428
AdeI	CACNNNGTG	1 cut(s)	406
AfaI	GTAC	3 cut(s)	412, 437, 635
AfiI	CCNNNNNNNGG	1 cut(s)	564
AgsI	TTSAA	4 cut(s)	389, 443, 575, 798
AjiI	CACGTC	2 cut(s)	13, 214
AjnI	CCWGG	2 cut(s)	294, 645
AluBI	AGCT	6 cut(s)	344, 466, 502, 667, 678, 722
AluI	AGCT	6 cut(s)	344, 466, 502, 667, 678, 722
Alw21I	GWGCWC	2 cut(s)	504, 540
AlwI	GGATC	6 cut(s)	59, 608, 621, 761, 774, 792
AoxI	GGCC	1 cut(s)	216
ApeKI	GCWGC	1 cut(s)	282
AseI	ATTAAT	1 cut(s)	260
AspLEI	GCGC	4 cut(s)	167, 226, 430, 688
AspS9I	GGNCC	1 cut(s)	643
AsuHPI	GGTGA	1 cut(s)	539
AvaII	GGWCC	1 cut(s)	643
BalI	TGGCCA	1 cut(s)	218
BamHI	GGATCC	2 cut(s)	613, 766
BanI	GGYRCC	2 cut(s)	164, 427
BanII	GRGCYC	1 cut(s)	504
BbrPI	CACGTG	1 cut(s)	403
BbsI	GAAGAC	2 cut(s)	146, 369
Bbv12I	GWGCWC	2 cut(s)	504, 540
BbvCI	CCTCAGC	1 cut(s)	780
BbvI	GCAGC	1 cut(s)	294
BccI	CCATC	3 cut(s)	365, 652, 778
BcgI	CGANNNNNNTGC	2 cut(s)	458, 492
BciT130I	CCWGG	2 cut(s)	296, 647
BclI	TGATCA	1 cut(s)	453
BfaI	CTAG	2 cut(s)	207, 758
BfoI	RGCGCY	2 cut(s)	168, 431
BisI	GCNGC	1 cut(s)	283
BlpI	GCTNAGC	1 cut(s)	663
BlsI	GCNGC	1 cut(s)	284
Bme1390I	CCNGG	2 cut(s)	296, 647
Bme18I	GGWCC	1 cut(s)	643
BmgBI	CACGTC	2 cut(s)	13, 214
BmgT120I	GGNCC	1 cut(s)	643
BmiI	GGNNCC	4 cut(s)	166, 429, 615, 768
BmrFI	CCNGG	2 cut(s)	296, 647
BmrI	ACTGGG	1 cut(s)	772
BmsI	GCATC	2 cut(s)	289, 766
BmuI	ACTGGG	1 cut(s)	772
BpiI	GAAGAC	2 cut(s)	146, 369
Bpu10I	CCTNAGC	1 cut(s)	780
Bpu1102I	GCTNAGC	1 cut(s)	663
BpuEI	CTTGAG	2 cut(s)	328, 702
BsaAI	YACGTR	1 cut(s)	403
BsaHI	GRCGYC	2 cut(s)	165, 428
BsaJI	CCNNGG	2 cut(s)	97, 315
BsaXI	ACNNNNNCTCC	6 cut(s)	238, 268, 491, 521, 570, 600
Bsc4I	CCNNNNNNNGG	1 cut(s)	564
Bse1I	ACTGG	2 cut(s)	219, 767
Bse3DI	GCAATG	1 cut(s)	542
BseBI	CCWGG	2 cut(s)	296, 647
BseDI	CCNNGG	2 cut(s)	97, 315
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	1 cut(s)	564
BseMI	GCAATG	1 cut(s)	542
BseMII	CTCAG	3 cut(s)	677, 771, 820
BseNI	ACTGG	2 cut(s)	219, 767
BseXI	GCAGC	1 cut(s)	294
BshFI	GGCC	1 cut(s)	218
BshNI	GGYRCC	2 cut(s)	164, 427
BsiHKAI	GWGCWC	2 cut(s)	504, 540
BsiSI	CCGG	2 cut(s)	24, 431
BslFI	GGGAC	2 cut(s)	605, 742
BslI	CCNNNNNNNGG	1 cut(s)	564
BsmFI	GGGAC	2 cut(s)	605, 742
BsnI	GGCC	1 cut(s)	218
Bsp1286I	GDGCHC	2 cut(s)	504, 540
Bsp143I	GATC	7 cut(s)	33, 51, 453, 613, 693, 766, 784
Bsp1720I	GCTNAGC	1 cut(s)	663
BspACI	CCGC	1 cut(s)	49
BspANI	GGCC	1 cut(s)	218
BspCNI	CTCAG	3 cut(s)	676, 772, 819
BspLI	GGNNCC	4 cut(s)	166, 429, 615, 768
BspPI	GGATC	6 cut(s)	59, 608, 621, 761, 774, 792
BspQI	GCTCTTC	2 cut(s)	511, 528
BspT107I	GGYRCC	2 cut(s)	164, 427
BsrDI	GCAATG	1 cut(s)	542
BsrI	ACTGG	2 cut(s)	219, 767
BssECI	CCNNGG	2 cut(s)	97, 315
BssMI	GATC	7 cut(s)	33, 51, 453, 613, 693, 766, 784
BssNI	GRCGYC	2 cut(s)	165, 428
BssT1I	CCWWGG	2 cut(s)	97, 315
Bst2UI	CCWGG	2 cut(s)	296, 647
Bst6I	CTCTTC	2 cut(s)	511, 528
BstACI	GRCGYC	2 cut(s)	165, 428
BstAPI	GCANNNNNTGC	1 cut(s)	544
BstBAI	YACGTR	1 cut(s)	403
BstC8I	GCNNGC	1 cut(s)	669
BstDEI	CTNAG	5 cut(s)	663, 672, 780, 788, 806
BstF5I	GGATG	1 cut(s)	304
BstH2I	RGCGCY	2 cut(s)	168, 431
BstHHI	GCGC	4 cut(s)	167, 226, 430, 688
BstKTI	GATC	7 cut(s)	36, 54, 456, 616, 696, 769, 787
BstMBI	GATC	7 cut(s)	33, 51, 453, 613, 693, 766, 784
BstMWI	GCNNNNNNNGC	3 cut(s)	320, 544, 668
BstNI	CCWGG	2 cut(s)	296, 647
BstSCI	CCNGG	2 cut(s)	294, 645
BstV1I	GCAGC	1 cut(s)	294
BstV2I	GAAGAC	2 cut(s)	146, 369
BstX2I	RGATCY	3 cut(s)	613, 766, 784
BstYI	RGATCY	3 cut(s)	613, 766, 784
BsuRI	GGCC	1 cut(s)	218
BtrI	CACGTC	2 cut(s)	13, 214
BtsCI	GGATG	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	669
CfoI	GCGC	4 cut(s)	167, 226, 430, 688
Cfr13I	GGNCC	1 cut(s)	643
Csp6I	GTAC	3 cut(s)	411, 436, 634
CviAII	CATG	2 cut(s)	183, 424
CviQI	GTAC	3 cut(s)	411, 436, 634
DdeI	CTNAG	5 cut(s)	663, 672, 780, 788, 806
DinI	GGCGCC	2 cut(s)	166, 429
DpnI	GATC	7 cut(s)	35, 53, 455, 615, 695, 768, 786
DpnII	GATC	7 cut(s)	33, 51, 453, 613, 693, 766, 784
DraIII	CACNNNGTG	1 cut(s)	406
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	2 cut(s)	511, 528
EarI	CTCTTC	2 cut(s)	511, 528
Ecl136II	GAGCTC	1 cut(s)	502
Eco130I	CCWWGG	2 cut(s)	97, 315
Eco24I	GRGCYC	1 cut(s)	504
Eco47I	GGWCC	1 cut(s)	643
Eco53kI	GAGCTC	1 cut(s)	502
Eco57I	CTGAAG	1 cut(s)	65
Eco72I	CACGTG	1 cut(s)	403
EcoICRI	GAGCTC	1 cut(s)	502
EcoRII	CCWGG	2 cut(s)	294, 645
EcoT14I	CCWWGG	2 cut(s)	97, 315
EcoT38I	GRGCYC	1 cut(s)	504
EgeI	GGCGCC	2 cut(s)	166, 429
EheI	GGCGCC	2 cut(s)	166, 429
ErhI	CCWWGG	2 cut(s)	97, 315
FaeI	CATG	2 cut(s)	186, 427
FaiI	YATR	8 cut(s)	159, 184, 234, 236, 425, 552, 611, 813
FaqI	GGGAC	2 cut(s)	605, 742
FatI	CATG	2 cut(s)	182, 423
FbaI	TGATCA	1 cut(s)	453
FblI	GTMKAC	1 cut(s)	752
Fnu4HI	GCNGC	1 cut(s)	283
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	1 cut(s)	504
Fsp4HI	GCNGC	1 cut(s)	283
FspBI	CTAG	2 cut(s)	207, 758
GlaI	GCGC	4 cut(s)	166, 225, 429, 687
GluI	GCNGC	1 cut(s)	283
HaeII	RGCGCY	2 cut(s)	168, 431
HaeIII	GGCC	1 cut(s)	218
HapII	CCGG	2 cut(s)	24, 431
HhaI	GCGC	4 cut(s)	167, 226, 430, 688
Hin1I	GRCGYC	2 cut(s)	165, 428
Hin1II	CATG	2 cut(s)	186, 427
Hin6I	GCGC	4 cut(s)	165, 224, 428, 686
HinP1I	GCGC	4 cut(s)	165, 224, 428, 686
HincII	GTYRAC	1 cut(s)	753
HindII	GTYRAC	1 cut(s)	753
HindIII	AAGCTT	1 cut(s)	720
HinfI	GANTC	7 cut(s)	75, 84, 554, 730, 742, 754, 794
HpaII	CCGG	2 cut(s)	24, 431
HphI	GGTGA	1 cut(s)	539
Hpy166II	GTNNAC	3 cut(s)	94, 118, 753
Hpy188I	TCNGA	6 cut(s)	45, 74, 201, 462, 624, 775
Hpy188III	TCNNGA	3 cut(s)	81, 510, 758
Hpy8I	GTNNAC	3 cut(s)	94, 118, 753
Hpy99I	CGWCG	3 cut(s)	14, 32, 754
HpyAV	CCTTC	3 cut(s)	141, 569, 627
HpyCH4IV	ACGT	3 cut(s)	12, 213, 402
HpyCH4V	TGCA	2 cut(s)	302, 479
HpyF10VI	GCNNNNNNNGC	3 cut(s)	320, 544, 668
HpyF3I	CTNAG	5 cut(s)	663, 672, 780, 788, 806
HpySE526I	ACGT	3 cut(s)	12, 213, 402
Hsp92I	GRCGYC	2 cut(s)	165, 428
Hsp92II	CATG	2 cut(s)	186, 427
HspAI	GCGC	4 cut(s)	165, 224, 428, 686
KasI	GGCGCC	2 cut(s)	164, 427
Ksp22I	TGATCA	1 cut(s)	453
Kzo9I	GATC	7 cut(s)	33, 51, 453, 613, 693, 766, 784
LguI	GCTCTTC	2 cut(s)	511, 528
LmnI	GCTCC	2 cut(s)	133, 499
Lsp1109I	GCAGC	1 cut(s)	294
LweI	GCATC	2 cut(s)	289, 766
MaeI	CTAG	2 cut(s)	207, 758
MaeII	ACGT	3 cut(s)	12, 213, 402
MaeIII	GTNAC	2 cut(s)	209, 801
MalI	GATC	7 cut(s)	35, 53, 455, 615, 695, 768, 786
MboI	GATC	7 cut(s)	33, 51, 453, 613, 693, 766, 784
MboII	GAAGA	7 cut(s)	146, 374, 380, 525, 528, 545, 751
MflI	RGATCY	3 cut(s)	613, 766, 784
MhlI	GDGCHC	2 cut(s)	504, 540
MlsI	TGGCCA	1 cut(s)	218
MluCI	AATT	3 cut(s)	241, 325, 597
MluNI	TGGCCA	1 cut(s)	218
Mly113I	GGCGCC	2 cut(s)	165, 428
MlyI	GAGTC	4 cut(s)	69, 563, 724, 748
MmeI	TCCRAC	3 cut(s)	87, 333, 477
MnlI	CCTC	9 cut(s)	122, 186, 264, 284, 390, 408, 532, 582, 775
Mox20I	TGGCCA	1 cut(s)	218
MscI	TGGCCA	1 cut(s)	218
MseI	TTAA	2 cut(s)	260, 600
Msp20I	TGGCCA	1 cut(s)	218
MspI	CCGG	2 cut(s)	24, 431
MspR9I	CCNGG	2 cut(s)	296, 647
MvaI	CCWGG	2 cut(s)	296, 647
MwoI	GCNNNNNNNGC	3 cut(s)	320, 544, 668
NarI	GGCGCC	2 cut(s)	165, 428
NdeII	GATC	7 cut(s)	33, 51, 453, 613, 693, 766, 784
NlaIII	CATG	2 cut(s)	186, 427
NlaIV	GGNNCC	4 cut(s)	166, 429, 615, 768
NmuCI	GTSAC	2 cut(s)	209, 801
PciSI	GCTCTTC	2 cut(s)	511, 528
PfeI	GAWTC	3 cut(s)	84, 742, 794
PfoI	TCCNGGA	1 cut(s)	294
PkrI	GCNGC	1 cut(s)	284
PleI	GAGTC	4 cut(s)	69, 562, 724, 748
PluTI	GGCGCC	2 cut(s)	168, 431
PmaCI	CACGTG	1 cut(s)	403
PmlI	CACGTG	1 cut(s)	403
PpsI	GAGTC	4 cut(s)	69, 562, 724, 748
Ppu21I	YACGTR	1 cut(s)	403
PshBI	ATTAAT	1 cut(s)	260
Psp124BI	GAGCTC	1 cut(s)	504
Psp6I	CCWGG	2 cut(s)	294, 645
PspCI	CACGTG	1 cut(s)	403
PspGI	CCWGG	2 cut(s)	294, 645
PspN4I	GGNNCC	4 cut(s)	166, 429, 615, 768
PspPI	GGNCC	1 cut(s)	643
PsuI	RGATCY	3 cut(s)	613, 766, 784
RsaI	GTAC	3 cut(s)	412, 437, 635
RsaNI	GTAC	3 cut(s)	411, 436, 634
SacI	GAGCTC	1 cut(s)	504
SalI	GTCGAC	1 cut(s)	751
SapI	GCTCTTC	2 cut(s)	511, 528
SaqAI	TTAA	2 cut(s)	260, 600
SatI	GCNGC	1 cut(s)	283
Sau3AI	GATC	7 cut(s)	33, 51, 453, 613, 693, 766, 784
Sau96I	GGNCC	1 cut(s)	643
SchI	GAGTC	4 cut(s)	69, 563, 724, 748
ScrFI	CCNGG	2 cut(s)	296, 647
SduI	GDGCHC	2 cut(s)	504, 540
SfaNI	GCATC	2 cut(s)	289, 766
SfoI	GGCGCC	2 cut(s)	166, 429
SinI	GGWCC	1 cut(s)	643
SmlI	CTYRAG	2 cut(s)	307, 717
SmoI	CTYRAG	2 cut(s)	307, 717
Sse9I	AATT	3 cut(s)	241, 325, 597
SsiI	CCGC	1 cut(s)	49
SspDI	GGCGCC	2 cut(s)	164, 427
SspMI	CTAG	2 cut(s)	207, 758
SstI	GAGCTC	1 cut(s)	504
StyD4I	CCNGG	2 cut(s)	294, 645
StyI	CCWWGG	2 cut(s)	97, 315
TaiI	ACGT	3 cut(s)	15, 216, 405
TaqI	TCGA	6 cut(s)	348, 468, 656, 703, 737, 752
TasI	AATT	3 cut(s)	241, 325, 597
TatI	WGTACW	1 cut(s)	435
TfiI	GAWTC	3 cut(s)	84, 742, 794
Tru1I	TTAA	2 cut(s)	260, 600
Tru9I	TTAA	2 cut(s)	260, 600
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	2 cut(s)	209, 801
TseI	GCWGC	1 cut(s)	282
Tsp45I	GTSAC	2 cut(s)	209, 801
TspDTI	ATGAA	2 cut(s)	146, 546
TspGWI	ACGGA	1 cut(s)	462
TspRI	CASTG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	643
VspI	ATTAAT	1 cut(s)	260
XbaI	TCTAGA	1 cut(s)	757
XcmI	CCANNNNNNNNNTGG	1 cut(s)	331
XmiI	GTMKAC	1 cut(s)	752
XspI	CTAG	2 cut(s)	207, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.