Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8386267.1

Orthogroup ID

OG0008355

Physical Location & Seq

Genomic Coordinates Forward (+)

113 .. 1193

Gene Structure 1081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8386267.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1081 bp

atggtggtctctgttctactagttgcagctgtgcatgggcagcagacctacctagccaacaagcagctcgactgctacaacaactacaactccaccgacggctacgtctgcaacggcccctccccctcttgcaactcctacctcactttccgctccatcaaccctctctacaactccccaacctctatcgcctacctcctcggctccaccgcctccgaaatcgcctccgccaacaacatctccgacgtcgcccccatcgccgccgacaccctcgtcctcgtccccgtcaactgctcctgctccggcaactactcccagcacaacgcctcctacatcctcaagaccgcctccgacacctacttcggcgtcgccaacaacacctaccagggcctcaccacctgtcagtccctcatgcaccagaacccctacggcgaccgaaacctcactgtcggcctccgcttggaagtccccgtcagatgcgcctgccccaccgccgcccaggccgccgctggcatcaactacctgctcgtctacctaatcacgtggggcgactcaactgaagcaatcgctcaacgcttcggcgtagatgagtccaccttgctcgcagccaacgacctgttgtccaccgacatcatctatcccttcacgcccttactggttcctctcaaaaccaaaccttcccctcttcaactgccaacctcacctcctccgtctccgtctccgccgcctcctcccccgccgagtggcggctcttccaacaacaagtgggtcttcatcggcgtcggcatcggagctggttgtctcctcctcctcaccgccctcgccgccttcctcttcttatccaaacgacgccgccgtcagctccgccaatctcccaaacccaacttgcgtccaaagagctccggtgactacacgccgaactctctgctacccaccatcgcctccgacgacacaacgaaatcgtggtcttccagcgggcttaacattgcggtggagtccttgacgccttacaaattccaagacctgcagagggccacccaattcttcagcgagtccaacagaatcaacggctcctccgttt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009719 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0035690 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071323 GO:0071417 GO:0071495 GO:0071704 GO:0071944 GO:0097367 GO:0140096 GO:1901564 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

360

Amino Acids

38.57

Weight (kDa)

8.31

Isoelectric Point (pI)

57.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33580
fragaria_vesca	FvH4_5g26710 FvH4_5g26740
prunus_persica	Prupe.5G001000_v2.0.a1
pyrus_communis	pycom16g26340
rosa_chinensis	RchiOBHm_Chr7g0217591 RchiOBHm_Chr7g0217601
rosa_laevigata	RLG00000002457 RLG00000002458
rosa_multiflora	Rmu_co8386267.1_g000001 Rmu_sc0006161.1_g000002 Rmu_ssc0000225.1_g000002
rosa_roxburghii	Rroxscaffold_3G00241810 Rroxscaffold_3G00241840
rosa_rugosa	Rorug07G0170300 Rorug07G0170300
rosa_samantha	Rh7AG310400 Rh7BG301700 Rh7CG329400 Rh7DG309800 Rh7DG310500
rosa_wichuraiana	Rw7G026310 Rw7G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	104, 272, 855
AatII	GACGTC	1 cut(s)	249
Acc36I	ACCTGC	2 cut(s)	531, 1032
AccBSI	CCGCTC	1 cut(s)	153
AccI	GTMKAC	1 cut(s)	531
AcsI	RAATTY	1 cut(s)	1013
AcuI	CTGAAG	2 cut(s)	579, 1030
AcvI	CACGTG	1 cut(s)	543
AcyI	GRCGYC	5 cut(s)	246, 366, 780, 850, 1004
AfiI	CCNNNNNNNGG	4 cut(s)	460, 743, 746, 1030
AgsI	TTSAA	1 cut(s)	689
AhdI	GACNNNNNGTC	1 cut(s)	619
AhlI	ACTAGT	1 cut(s)	19
AjnI	CCWGG	2 cut(s)	384, 498
AluBI	AGCT	5 cut(s)	29, 67, 794, 862, 900
AluI	AGCT	5 cut(s)	29, 67, 794, 862, 900
Alw21I	GWGCWC	1 cut(s)	902
Alw26I	GTCTC	4 cut(s)	13, 717, 723, 806
AoxI	GGCC	5 cut(s)	115, 388, 451, 501, 1032
ApeKI	GCWGC	4 cut(s)	26, 40, 64, 605
ApoI	RAATTY	1 cut(s)	1013
ArsI	GACNNNNNNTTYG	4 cut(s)	344, 376, 950, 982
AspLEI	GCGC	1 cut(s)	482
AspS9I	GGNCC	3 cut(s)	116, 388, 1032
AsuHPI	GGTGA	4 cut(s)	385, 693, 805, 917
BanII	GRGCYC	1 cut(s)	902
BbrPI	CACGTG	1 cut(s)	543
BbsI	GAAGAC	2 cut(s)	763, 960
Bbv12I	GWGCWC	1 cut(s)	902
BbvI	GCAGC	4 cut(s)	38, 52, 76, 617
BccI	CCATC	3 cut(s)	164, 263, 944
BceAI	ACGGC	4 cut(s)	115, 130, 445, 840
BcgI	CGANNNNNNTGC	2 cut(s)	907, 941
BciT130I	CCWGG	2 cut(s)	386, 500
BcoDI	GTCTC	4 cut(s)	13, 717, 723, 806
BcuI	ACTAGT	1 cut(s)	19
BfaI	CTAG	2 cut(s)	20, 53
BfmI	CTRYAG	1 cut(s)	1025
BfuAI	ACCTGC	2 cut(s)	531, 1032
BglI	GCCNNNNNGGC	1 cut(s)	500
Bme1390I	CCNGG	2 cut(s)	386, 500
BmeRI	GACNNNNNGTC	1 cut(s)	619
BmgT120I	GGNCC	3 cut(s)	116, 388, 1032
BmiI	GGNNCC	4 cut(s)	118, 205, 660, 1072
BmrFI	CCNGG	2 cut(s)	386, 500
BmsI	GCATC	3 cut(s)	467, 522, 795
BpiI	GAAGAC	2 cut(s)	763, 960
BpuEI	CTTGAG	1 cut(s)	323
BsaAI	YACGTR	1 cut(s)	543
BsaHI	GRCGYC	5 cut(s)	246, 366, 780, 850, 1004
BsaI	GGTCTC	1 cut(s)	13
BsaJI	CCNNGG	3 cut(s)	199, 385, 498
BsaWI	WCCGGW	1 cut(s)	902
Bsc4I	CCNNNNNNNGG	4 cut(s)	460, 743, 746, 1030
Bse1I	ACTGG	1 cut(s)	660
Bse3DI	GCAATG	1 cut(s)	984
BseBI	CCWGG	2 cut(s)	386, 500
BseDI	CCNNGG	3 cut(s)	199, 385, 498
BseGI	GGATG	1 cut(s)	333
BseLI	CCNNNNNNNGG	4 cut(s)	460, 743, 746, 1030
BseMI	GCAATG	1 cut(s)	984
BseNI	ACTGG	1 cut(s)	660
BseRI	GAGGAG	7 cut(s)	188, 696, 720, 794, 797, 800, 1063
BseXI	GCAGC	4 cut(s)	38, 52, 76, 617
BseYI	CCCAGC	1 cut(s)	315
Bsh1285I	CGRYCG	1 cut(s)	436
BshFI	GGCC	5 cut(s)	117, 390, 453, 503, 1034
BsiEI	CGRYCG	1 cut(s)	436
BsiHKAI	GWGCWC	1 cut(s)	902
BsiSI	CCGG	2 cut(s)	303, 903
BslFI	GGGAC	3 cut(s)	266, 391, 452
BslI	CCNNNNNNNGG	4 cut(s)	460, 743, 746, 1030
BsmAI	GTCTC	4 cut(s)	13, 717, 723, 806
BsmBI	CGTCTC	2 cut(s)	717, 723
BsmFI	GGGAC	3 cut(s)	266, 391, 452
BsnI	GGCC	5 cut(s)	117, 390, 453, 503, 1034
Bso31I	GGTCTC	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	902
BspANI	GGCC	5 cut(s)	117, 390, 453, 503, 1034
BspLI	GGNNCC	4 cut(s)	118, 205, 660, 1072
BspMAI	CTGCAG	1 cut(s)	1029
BspMI	ACCTGC	2 cut(s)	531, 1032
BspQI	GCTCTTC	1 cut(s)	757
BspTNI	GGTCTC	1 cut(s)	13
BsrBI	CCGCTC	1 cut(s)	153
BsrDI	GCAATG	1 cut(s)	984
BsrI	ACTGG	1 cut(s)	660
BssECI	CCNNGG	3 cut(s)	199, 385, 498
BssNI	GRCGYC	5 cut(s)	246, 366, 780, 850, 1004
Bst2UI	CCWGG	2 cut(s)	386, 500
Bst4CI	ACNGT	1 cut(s)	448
Bst6I	CTCTTC	3 cut(s)	690, 757, 839
BstACI	GRCGYC	5 cut(s)	246, 366, 780, 850, 1004
BstBAI	YACGTR	1 cut(s)	543
BstC8I	GCNNGC	4 cut(s)	484, 511, 603, 977
BstF5I	GGATG	1 cut(s)	333
BstHHI	GCGC	1 cut(s)	482
BstMAI	GTCTC	4 cut(s)	13, 717, 723, 806
BstMCI	CGRYCG	1 cut(s)	436
BstMWI	GCNNNNNNNGC	6 cut(s)	40, 108, 257, 500, 503, 824
BstNI	CCWGG	2 cut(s)	386, 500
BstSCI	CCNGG	2 cut(s)	384, 498
BstSFI	CTRYAG	1 cut(s)	1025
BstV1I	GCAGC	4 cut(s)	38, 52, 76, 617
BstV2I	GAAGAC	2 cut(s)	763, 960
BsuRI	GGCC	5 cut(s)	117, 390, 453, 503, 1034
BtgZI	GCGATG	2 cut(s)	241, 922
BtsCI	GGATG	1 cut(s)	333
BtsIMutI	CAGTG	1 cut(s)	444
BveI	ACCTGC	2 cut(s)	531, 1032
Cac8I	GCNNGC	4 cut(s)	484, 511, 603, 977
CfoI	GCGC	1 cut(s)	482
Cfr13I	GGNCC	3 cut(s)	116, 388, 1032
CseI	GACGC	5 cut(s)	355, 769, 858, 878, 1012
CviAII	CATG	2 cut(s)	35, 412
DrdI	GACNNNNNNGTC	3 cut(s)	104, 272, 855
DriI	GACNNNNNGTC	1 cut(s)	619
DseDI	GACNNNNNNGTC	3 cut(s)	104, 272, 855
Eam1104I	CTCTTC	3 cut(s)	690, 757, 839
Eam1105I	GACNNNNNGTC	1 cut(s)	619
EarI	CTCTTC	3 cut(s)	690, 757, 839
EciI	GGCGGA	3 cut(s)	217, 711, 854
Ecl136II	GAGCTC	1 cut(s)	900
Eco24I	GRGCYC	1 cut(s)	902
Eco31I	GGTCTC	1 cut(s)	13
Eco53kI	GAGCTC	1 cut(s)	900
Eco57I	CTGAAG	2 cut(s)	579, 1030
Eco72I	CACGTG	1 cut(s)	543
EcoICRI	GAGCTC	1 cut(s)	900
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRII	CCWGG	2 cut(s)	384, 498
EcoT38I	GRGCYC	1 cut(s)	902
Esp3I	CGTCTC	2 cut(s)	717, 723
FaeI	CATG	2 cut(s)	38, 415
FaiI	YATR	2 cut(s)	36, 413
FalI	AAGNNNNNCTT	2 cut(s)	755, 787
FaqI	GGGAC	3 cut(s)	266, 391, 452
FatI	CATG	2 cut(s)	34, 411
FauI	CCCGC	2 cut(s)	744, 968
FblI	GTMKAC	1 cut(s)	531
FokI	GGATG	1 cut(s)	320
FriOI	GRGCYC	1 cut(s)	902
FspBI	CTAG	2 cut(s)	20, 53
GlaI	GCGC	1 cut(s)	481
GsaI	CCCAGC	1 cut(s)	319
HaeIII	GGCC	5 cut(s)	117, 390, 453, 503, 1034
HapII	CCGG	2 cut(s)	303, 903
HgaI	GACGC	5 cut(s)	355, 769, 858, 878, 1012
HhaI	GCGC	1 cut(s)	482
Hin1I	GRCGYC	5 cut(s)	246, 366, 780, 850, 1004
Hin1II	CATG	2 cut(s)	38, 415
Hin6I	GCGC	1 cut(s)	480
HinP1I	GCGC	1 cut(s)	480
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HinfI	GANTC	5 cut(s)	551, 590, 995, 1052, 1062
HpaII	CCGG	2 cut(s)	303, 903
HphI	GGTGA	4 cut(s)	385, 693, 805, 917
Hpy166II	GTNNAC	4 cut(s)	289, 532, 594, 624
Hpy188I	TCNGA	6 cut(s)	217, 244, 352, 476, 791, 946
Hpy188III	TCNNGA	1 cut(s)	340
Hpy8I	GTNNAC	4 cut(s)	289, 532, 594, 624
Hpy99I	CGWCG	7 cut(s)	101, 248, 251, 371, 785, 852, 950
HpyAV	CCTTC	3 cut(s)	652, 687, 838
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4IV	ACGT	3 cut(s)	105, 246, 542
HpyCH4V	TGCA	6 cut(s)	26, 34, 111, 132, 415, 1027
HpyF10VI	GCNNNNNNNGC	6 cut(s)	40, 108, 257, 500, 503, 824
HpySE526I	ACGT	3 cut(s)	105, 246, 542
Hsp92I	GRCGYC	5 cut(s)	246, 366, 780, 850, 1004
Hsp92II	CATG	2 cut(s)	38, 415
HspAI	GCGC	1 cut(s)	480
LguI	GCTCTTC	1 cut(s)	757
LmnI	GCTCC	8 cut(s)	158, 209, 299, 305, 791, 867, 905, 1076
Lsp1109I	GCAGC	4 cut(s)	38, 52, 76, 617
LweI	GCATC	3 cut(s)	467, 522, 795
MaeI	CTAG	2 cut(s)	20, 53
MaeII	ACGT	3 cut(s)	105, 246, 542
MaeIII	GTNAC	1 cut(s)	905
MbiI	CCGCTC	1 cut(s)	153
MboII	GAAGA	6 cut(s)	677, 744, 763, 826, 960, 1036
MhlI	GDGCHC	1 cut(s)	902
MluCI	AATT	2 cut(s)	1013, 1040
MlyI	GAGTC	4 cut(s)	545, 599, 1004, 1061
MmeI	TCCRAC	5 cut(s)	267, 375, 780, 969, 1080
MseI	TTAA	1 cut(s)	981
MslI	CAYNNNNRTG	1 cut(s)	989
MspA1I	CMGCKG	3 cut(s)	29, 509, 975
MspI	CCGG	2 cut(s)	303, 903
MspR9I	CCNGG	2 cut(s)	386, 500
MvaI	CCWGG	2 cut(s)	386, 500
MwoI	GCNNNNNNNGC	6 cut(s)	40, 108, 257, 500, 503, 824
NlaIII	CATG	2 cut(s)	38, 415
NlaIV	GGNNCC	4 cut(s)	118, 205, 660, 1072
NmeAIII	GCCGAG	2 cut(s)	180, 765
NmuCI	GTSAC	1 cut(s)	905
PciSI	GCTCTTC	1 cut(s)	757
PcsI	WCGNNNNNNNCGW	4 cut(s)	609, 853, 945, 1074
PfeI	GAWTC	1 cut(s)	1062
PleI	GAGTC	4 cut(s)	545, 598, 1003, 1060
PmaCI	CACGTG	1 cut(s)	543
PmlI	CACGTG	1 cut(s)	543
PpsI	GAGTC	4 cut(s)	545, 598, 1003, 1060
Ppu21I	YACGTR	1 cut(s)	543
Psp124BI	GAGCTC	1 cut(s)	902
Psp6I	CCWGG	2 cut(s)	384, 498
PspCI	CACGTG	1 cut(s)	543
PspFI	CCCAGC	1 cut(s)	315
PspGI	CCWGG	2 cut(s)	384, 498
PspN4I	GGNNCC	4 cut(s)	118, 205, 660, 1072
PspPI	GGNCC	3 cut(s)	116, 388, 1032
PstI	CTGCAG	1 cut(s)	1029
PvuII	CAGCTG	1 cut(s)	29
RseI	CAYNNNNRTG	1 cut(s)	989
SacI	GAGCTC	1 cut(s)	902
SapI	GCTCTTC	1 cut(s)	757
SaqAI	TTAA	1 cut(s)	981
Sau96I	GGNCC	3 cut(s)	116, 388, 1032
SchI	GAGTC	4 cut(s)	545, 599, 1004, 1061
ScrFI	CCNGG	2 cut(s)	386, 500
SduI	GDGCHC	1 cut(s)	902
SfaNI	GCATC	3 cut(s)	467, 522, 795
SfcI	CTRYAG	1 cut(s)	1025
SmiMI	CAYNNNNRTG	1 cut(s)	989
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
SpeI	ACTAGT	1 cut(s)	19
Sse9I	AATT	2 cut(s)	1013, 1040
SspMI	CTAG	2 cut(s)	20, 53
SstI	GAGCTC	1 cut(s)	902
StyD4I	CCNGG	2 cut(s)	384, 498
TaaI	ACNGT	1 cut(s)	448
TaiI	ACGT	3 cut(s)	108, 249, 545
TaqI	TCGA	1 cut(s)	69
TaqII	GACCGA	1 cut(s)	450
TasI	AATT	2 cut(s)	1013, 1040
TauI	GCSGC	8 cut(s)	263, 497, 506, 509, 727, 750, 827, 855
TfiI	GAWTC	1 cut(s)	1062
Tru1I	TTAA	1 cut(s)	981
Tru9I	TTAA	1 cut(s)	981
TscAI	CASTG	1 cut(s)	451
TseFI	GTSAC	1 cut(s)	905
TseI	GCWGC	4 cut(s)	26, 40, 64, 605
Tsp45I	GTSAC	1 cut(s)	905
TspDTI	ATGAA	1 cut(s)	763
TspGWI	ACGGA	3 cut(s)	699, 705, 1066
TspRI	CASTG	1 cut(s)	451
XapI	RAATTY	1 cut(s)	1013
XcmI	CCANNNNNNNNNTGG	1 cut(s)	506
XmiI	GTMKAC	1 cut(s)	531
XspI	CTAG	2 cut(s)	20, 53
ZraI	GACGTC	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.