Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008355

Physical Location & Seq

Genomic Coordinates Forward (+)

34427175 .. 34429142

Gene Structure 1968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002457

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1968 bp

ATGAAGATGAAGTTGCTGACGCTAATGGTGGTCTCTGTTCTACTAGTTGCAGCTGTGCATGGGCAGCAGACCTACCTAGCCAACAAGCAGCTCGACTGCTACAACAACTACAACTCCACCGACGGCTACGTCTGCAACGGCGCCTCCCCCTCTTGCATCTCCTACCTCACTTTCCGCTCCATCGACCCTCTCTACAACTCCCCAACCTCTATCGCCTACCTCCTCGACTCCACCCCCTCCGAAATCGCCTCCGCCAACAATATCACCGACGTCGCCCCCATCCCCGCCGACACCGTCGTCCTCGTCCCCGTCAACTGCTCCTGCTCCGGCAACTACTCCCAGCACAACGCCTCCTACATCCTCAAGACCGCCTCCGACACCTACTTCGGCGTCGCCAACAACACCTACCAGGGCCTCACCACCTGTCAGTCCCTCATGCACCAGAACCCCTACGGCGACCGAAACCTCACCGCCAACCTCAAGTTGGAAGTCCCCGTCAGATGCGCCTGCCCCACCGCCGCCCAGGCCGCCGTCGGCATCAACTACCTGCTCGTCTACCTAGTCACGTGGGGCGACACAACTGAAGCAATCGCTCAACGCTTCGGCGCAGATGAGTCCACCTTGCGCGCAGCCAACGAGCTGTCGTCCACCGACATCATCTATCCCTTTACGCCCTTACTGGTTCCTCTCAAAACCAAACCTTCCCCTCTTCAGCTCCAGCTCCCAGTCTCACCTCCTCCGTCTGCGCCGTCGCAGCCTCCTCCTCCCCCGCCGAGCGGCGGCTCTTCCGACAACAAGTGGGTCTTCATCGGCGTCGGCATCGGAGCTGGTTGTCTCCTCCTACTCGCCGCCTTCCTCTTCTTATCAAAACGACGCCGCCGCCAGCTCCGCCAATCTCCCAAACCCAACTTGCGTCCAAAGAGCTCCGGTGACTACACGCCGACCTCTCTGCTACCCACCACCGCCTCCGACGACACAACGAAATCGTGGTCTTCCAGCGGGCTTAAAATTGCGGTGGAGTCCTTGACGCCTTACAAATTCCAAGACCTGCAGAGGGCCACCCAATTCTTCAGCGAGTCCAACAGAATCAACGGCTCCTCCGTTTTCAGAGCAACCTTCGACGGCGACGAAGCCGCCGTGAAGGTGATCACAGGCGACGTGGCACTCTCCGGCGACGAGATCAACATTCTGAAGCGGATCAATCACTCCAACATTATCAGACTCTCTGGATTCTGCGTCCACCAAGGAGACACTTACCTCGTCTACGAGTTCGCTCCTTCTGGCTCACTCATTGATTGTCTTCATAAAGGCGCCATTAGTCCTCTGTCATGGAAGCAGAGAGTTCAGATTGCTAGTGACGTGGCCAGTGCGCTCAACTATCTACACAATTTCACAGAGCCTCCTTTGATCCACAAGAACCTCAACAGCAGCAACATTCTCCTGGATGCAAACTTGAGAGCCAAGGTTGCCAATTTCGCTCTGGCAAGAGCTGTCGAGTTGGATAACGAAGACGAAGATGAAGGACAGGGATTTCAACAGACGAGGCACGTGGTCGGTACGAGGGGCTACATGGCGCCGGAGTACATTGAAAACGGAGTGATCACTCCGAAGCTTGATGTGTTTGCATTTGGGGTTGTTTTGTTGGAGCTCTTGTCTGGAAGAAGAGCCTCTGGTGATGAAGAGCACACATTGCTGTATGAGTCCATTAGTGGGGTGCTTGAAGGAGATGGTGTGAGGGACAAAATTAAAGAGTTTATGGATCCTTCTTTGAAAAGCCAGTACCCTTTGGACCTGGCGTTTTCGATGGCTCAGCTCGCTAAGAGCTGTGTTGCGCCTCAGATCAACTGTCGACCCACAATGGCTCAAGCTTCGGGGACTCTATCGAAGATTCTTTCGTCGACTCTAGACTGGGATCCATCTGATGCTGAGGATCTTAGAGATTCAAGGTCACTCAATTATGGCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009719 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0035690 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071323 GO:0071417 GO:0071495 GO:0071704 GO:0071944 GO:0097367 GO:0140096 GO:1901564 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

656

Amino Acids

71.17

Weight (kDa)

5.76

Isoelectric Point (pI)

49.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LysM1_NFP_LYK	PF23446	51 - 108	2.5e-18	NFP/LYK LysM1 domain
LysM2_CERK1_LYK3_4_5	PF23472	112 - 167	1.7e-25	LYK3/4/5 LysM2 domain
LysM3_LYK4_5	PF23473	182 - 230	1.3e-21	LYK4/5 LysM3 domain
LysM	PF01476	186 - 229	2.8e-08	LysM domain
Pkinase	PF00069	366 - 623	5.4e-35	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	391 - 623	9.2e-35	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33580
fragaria_vesca	FvH4_5g26710 FvH4_5g26740
prunus_persica	Prupe.5G001000_v2.0.a1
pyrus_communis	pycom16g26340
rosa_chinensis	RchiOBHm_Chr7g0217591 RchiOBHm_Chr7g0217601
rosa_laevigata	RLG00000002457 RLG00000002458
rosa_multiflora	Rmu_co8386267.1_g000001 Rmu_sc0006161.1_g000002 Rmu_ssc0000225.1_g000002
rosa_roxburghii	Rroxscaffold_3G00241810 Rroxscaffold_3G00241840
rosa_rugosa	Rorug07G0170300 Rorug07G0170300
rosa_samantha	Rh7AG310400 Rh7BG301700 Rh7CG329400 Rh7DG309800 Rh7DG310500
rosa_wichuraiana	Rw7G026310 Rw7G026350

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	128, 296
AatII	GACGTC	1 cut(s)	273
Acc36I	ACCTGC	2 cut(s)	555, 1056
AccB1I	GGYRCC	3 cut(s)	140, 1310, 1573
AccBSI	CCGCTC	2 cut(s)	177, 777
AccI	GTMKAC	4 cut(s)	555, 1263, 1849, 1898
AccII	CGCG	1 cut(s)	627
AclWI	GGATC	7 cut(s)	1205, 1402, 1754, 1767, 1907, 1920, 1938
AcoI	YGGCCR	1 cut(s)	1362
AcsI	RAATTY	1 cut(s)	1037
AcuI	CTGAAG	4 cut(s)	603, 695, 1054, 1211
AcvI	CACGTG	2 cut(s)	567, 1549
AcyI	GRCGYC	8 cut(s)	141, 270, 390, 813, 874, 1028, 1311, 1574
AfaI	GTAC	3 cut(s)	1558, 1583, 1781
AfiI	CCNNNNNNNGG	5 cut(s)	484, 776, 779, 1054, 1710
AgsI	TTSAA	5 cut(s)	1535, 1589, 1721, 1771, 1944
AhlI	ACTAGT	1 cut(s)	43
AjiI	CACGTC	2 cut(s)	1159, 1360
AjnI	CCWGG	4 cut(s)	408, 522, 1440, 1791
Alw21I	GWGCWC	3 cut(s)	926, 1650, 1686
Alw26I	GTCTC	4 cut(s)	37, 733, 839, 1242
AlwI	GGATC	7 cut(s)	1205, 1402, 1754, 1767, 1907, 1920, 1938
AoxI	GGCC	4 cut(s)	412, 525, 1056, 1362
ApeKI	GCWGC	6 cut(s)	50, 64, 88, 629, 754, 1428
ApoI	RAATTY	1 cut(s)	1037
ArsI	GACNNNNNNTTYG	4 cut(s)	368, 400, 974, 1006
AspS9I	GGNCC	3 cut(s)	412, 1056, 1789
AsuHPI	GGTGA	7 cut(s)	256, 409, 460, 723, 941, 1156, 1685
AvaII	GGWCC	1 cut(s)	1789
BalI	TGGCCA	1 cut(s)	1364
BamHI	GGATCC	2 cut(s)	1759, 1912
BanI	GGYRCC	3 cut(s)	140, 1310, 1573
BanII	GRGCYC	2 cut(s)	926, 1650
BbrPI	CACGTG	2 cut(s)	567, 1549
BbsI	GAAGAC	4 cut(s)	796, 984, 1292, 1515
Bbv12I	GWGCWC	3 cut(s)	926, 1650, 1686
BbvCI	CCTCAGC	1 cut(s)	1926
BbvI	GCAGC	6 cut(s)	62, 76, 100, 641, 766, 1440
BccI	CCATC	5 cut(s)	188, 287, 1721, 1798, 1924
BceAI	ACGGC	8 cut(s)	139, 154, 469, 515, 733, 1108, 1121, 1138
BcgI	CGANNNNNNTGC	2 cut(s)	931, 965
BciT130I	CCWGG	4 cut(s)	410, 524, 1442, 1793
BclI	TGATCA	2 cut(s)	1146, 1599
BcoDI	GTCTC	4 cut(s)	37, 733, 839, 1242
BcuI	ACTAGT	1 cut(s)	43
BfaI	CTAG	5 cut(s)	44, 77, 560, 1353, 1904
BfmI	CTRYAG	1 cut(s)	1049
BfoI	RGCGCY	3 cut(s)	144, 1314, 1577
BfuAI	ACCTGC	2 cut(s)	555, 1056
BglI	GCCNNNNNGGC	1 cut(s)	524
BlpI	GCTNAGC	1 cut(s)	1809
Bme1390I	CCNGG	4 cut(s)	410, 524, 1442, 1793
Bme18I	GGWCC	1 cut(s)	1789
BmgBI	CACGTC	2 cut(s)	1159, 1360
BmgT120I	GGNCC	3 cut(s)	412, 1056, 1789
BmiI	GGNNCC	7 cut(s)	142, 684, 1096, 1312, 1575, 1761, 1914
BmrFI	CCNGG	4 cut(s)	410, 524, 1442, 1793
BmrI	ACTGGG	2 cut(s)	719, 1918
BmsI	GCATC	6 cut(s)	165, 491, 546, 828, 1435, 1912
BmuI	ACTGGG	2 cut(s)	719, 1918
BpiI	GAAGAC	4 cut(s)	796, 984, 1292, 1515
BpmI	CTGGAG	1 cut(s)	701
Bpu10I	CCTNAGC	1 cut(s)	1926
Bpu1102I	GCTNAGC	1 cut(s)	1809
BpuEI	CTTGAG	4 cut(s)	347, 464, 1474, 1848
BsaAI	YACGTR	2 cut(s)	567, 1549
BsaHI	GRCGYC	8 cut(s)	141, 270, 390, 813, 874, 1028, 1311, 1574
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	4 cut(s)	409, 522, 1243, 1461
BsaWI	WCCGGW	1 cut(s)	926
Bsc4I	CCNNNNNNNGG	5 cut(s)	484, 776, 779, 1054, 1710
Bse1I	ACTGG	5 cut(s)	684, 725, 1365, 1777, 1913
Bse3DI	GCAATG	1 cut(s)	1688
BseBI	CCWGG	4 cut(s)	410, 524, 1442, 1793
BseDI	CCNNGG	4 cut(s)	409, 522, 1243, 1461
BseGI	GGATG	3 cut(s)	279, 357, 1450
BseLI	CCNNNNNNNGG	5 cut(s)	484, 776, 779, 1054, 1710
BseMI	GCAATG	1 cut(s)	1688
BseMII	CTCAG	3 cut(s)	1823, 1850, 1917
BseNI	ACTGG	5 cut(s)	684, 725, 1365, 1777, 1913
BsePI	GCGCGC	1 cut(s)	625
BseRI	GAGGAG	6 cut(s)	212, 726, 750, 753, 827, 1087
BseXI	GCAGC	6 cut(s)	62, 76, 100, 641, 766, 1440
BseYI	CCCAGC	1 cut(s)	339
Bsh1236I	CGCG	1 cut(s)	627
Bsh1285I	CGRYCG	1 cut(s)	460
BshFI	GGCC	4 cut(s)	414, 527, 1058, 1364
BshNI	GGYRCC	3 cut(s)	140, 1310, 1573
BsiEI	CGRYCG	1 cut(s)	460
BsiHKAI	GWGCWC	3 cut(s)	926, 1650, 1686
BsiSI	CCGG	4 cut(s)	327, 927, 1170, 1577
BslFI	GGGAC	5 cut(s)	290, 415, 476, 1751, 1888
BslI	CCNNNNNNNGG	5 cut(s)	484, 776, 779, 1054, 1710
BsmAI	GTCTC	4 cut(s)	37, 733, 839, 1242
BsmFI	GGGAC	5 cut(s)	290, 415, 476, 1751, 1888
BsnI	GGCC	4 cut(s)	414, 527, 1058, 1364
Bso31I	GGTCTC	1 cut(s)	37
Bsp1286I	GDGCHC	3 cut(s)	926, 1650, 1686
Bsp143I	GATC	9 cut(s)	1146, 1179, 1197, 1407, 1599, 1759, 1839, 1912, 1930
Bsp1720I	GCTNAGC	1 cut(s)	1809
BspANI	GGCC	4 cut(s)	414, 527, 1058, 1364
BspCNI	CTCAG	3 cut(s)	1822, 1849, 1918
BspFNI	CGCG	1 cut(s)	627
BspLI	GGNNCC	7 cut(s)	142, 684, 1096, 1312, 1575, 1761, 1914
BspMAI	CTGCAG	1 cut(s)	1053
BspMI	ACCTGC	2 cut(s)	555, 1056
BspPI	GGATC	7 cut(s)	1205, 1402, 1754, 1767, 1907, 1920, 1938
BspQI	GCTCTTC	3 cut(s)	790, 1657, 1674
BspT107I	GGYRCC	3 cut(s)	140, 1310, 1573
BspTNI	GGTCTC	1 cut(s)	37
BsrBI	CCGCTC	2 cut(s)	177, 777
BsrDI	GCAATG	1 cut(s)	1688
BsrI	ACTGG	5 cut(s)	684, 725, 1365, 1777, 1913
BssECI	CCNNGG	4 cut(s)	409, 522, 1243, 1461
BssHII	GCGCGC	1 cut(s)	625
BssMI	GATC	9 cut(s)	1146, 1179, 1197, 1407, 1599, 1759, 1839, 1912, 1930
BssNI	GRCGYC	8 cut(s)	141, 270, 390, 813, 874, 1028, 1311, 1574
BssT1I	CCWWGG	2 cut(s)	1243, 1461
Bst2UI	CCWGG	4 cut(s)	410, 524, 1442, 1793
Bst4CI	ACNGT	2 cut(s)	295, 1847
Bst6I	CTCTTC	5 cut(s)	714, 790, 863, 1657, 1674
BstACI	GRCGYC	8 cut(s)	141, 270, 390, 813, 874, 1028, 1311, 1574
BstAPI	GCANNNNNTGC	1 cut(s)	1690
BstBAI	YACGTR	2 cut(s)	567, 1549
BstC8I	GCNNGC	5 cut(s)	508, 627, 884, 1001, 1815
BstDEI	CTNAG	5 cut(s)	1809, 1818, 1836, 1926, 1934
BstF5I	GGATG	3 cut(s)	279, 357, 1450
BstFNI	CGCG	1 cut(s)	627
BstH2I	RGCGCY	3 cut(s)	144, 1314, 1577
BstKTI	GATC	9 cut(s)	1149, 1182, 1200, 1410, 1602, 1762, 1842, 1915, 1933
BstMAI	GTCTC	4 cut(s)	37, 733, 839, 1242
BstMBI	GATC	9 cut(s)	1146, 1179, 1197, 1407, 1599, 1759, 1839, 1912, 1930
BstMCI	CGRYCG	1 cut(s)	460
BstNI	CCWGG	4 cut(s)	410, 524, 1442, 1793
BstSCI	CCNGG	4 cut(s)	408, 522, 1440, 1791
BstSFI	CTRYAG	1 cut(s)	1049
BstUI	CGCG	1 cut(s)	627
BstV1I	GCAGC	6 cut(s)	62, 76, 100, 641, 766, 1440
BstV2I	GAAGAC	4 cut(s)	796, 984, 1292, 1515
BstX2I	RGATCY	3 cut(s)	1759, 1912, 1930
BstYI	RGATCY	3 cut(s)	1759, 1912, 1930
BsuRI	GGCC	4 cut(s)	414, 527, 1058, 1364
BtrI	CACGTC	2 cut(s)	1159, 1360
BtsCI	GGATG	3 cut(s)	279, 357, 1450
BtsIMutI	CAGTG	1 cut(s)	1372
BveI	ACCTGC	2 cut(s)	555, 1056
Cac8I	GCNNGC	5 cut(s)	508, 627, 884, 1001, 1815
Cfr13I	GGNCC	3 cut(s)	412, 1056, 1789
CseI	GACGC	7 cut(s)	28, 379, 802, 882, 902, 1036, 1225
Csp6I	GTAC	3 cut(s)	1557, 1582, 1780
CviAII	CATG	4 cut(s)	59, 436, 1329, 1570
CviQI	GTAC	3 cut(s)	1557, 1582, 1780
DdeI	CTNAG	5 cut(s)	1809, 1818, 1836, 1926, 1934
DinI	GGCGCC	3 cut(s)	142, 1312, 1575
DpnI	GATC	9 cut(s)	1148, 1181, 1199, 1409, 1601, 1761, 1841, 1914, 1932
DpnII	GATC	9 cut(s)	1146, 1179, 1197, 1407, 1599, 1759, 1839, 1912, 1930
DrdI	GACNNNNNNGTC	2 cut(s)	128, 296
DseDI	GACNNNNNNGTC	2 cut(s)	128, 296
EaeI	YGGCCR	1 cut(s)	1362
Eam1104I	CTCTTC	5 cut(s)	714, 790, 863, 1657, 1674
EarI	CTCTTC	5 cut(s)	714, 790, 863, 1657, 1674
EciI	GGCGGA	2 cut(s)	241, 878
Ecl136II	GAGCTC	2 cut(s)	924, 1648
Eco130I	CCWWGG	2 cut(s)	1243, 1461
Eco24I	GRGCYC	2 cut(s)	926, 1650
Eco31I	GGTCTC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	1789
Eco53kI	GAGCTC	2 cut(s)	924, 1648
Eco57I	CTGAAG	4 cut(s)	603, 695, 1054, 1211
Eco72I	CACGTG	2 cut(s)	567, 1549
EcoICRI	GAGCTC	2 cut(s)	924, 1648
EcoO109I	RGGNCCY	1 cut(s)	412
EcoRII	CCWGG	4 cut(s)	408, 522, 1440, 1791
EcoT14I	CCWWGG	2 cut(s)	1243, 1461
EcoT38I	GRGCYC	2 cut(s)	926, 1650
EgeI	GGCGCC	3 cut(s)	142, 1312, 1575
EheI	GGCGCC	3 cut(s)	142, 1312, 1575
ErhI	CCWWGG	2 cut(s)	1243, 1461
FaeI	CATG	4 cut(s)	62, 439, 1332, 1573
FaiI	YATR	8 cut(s)	60, 437, 1305, 1330, 1571, 1698, 1757, 1959
FalI	AAGNNNNNCTT	2 cut(s)	788, 820
FaqI	GGGAC	5 cut(s)	290, 415, 476, 1751, 1888
FatI	CATG	4 cut(s)	58, 435, 1328, 1569
FauI	CCCGC	3 cut(s)	292, 777, 992
FbaI	TGATCA	2 cut(s)	1146, 1599
FblI	GTMKAC	4 cut(s)	555, 1263, 1849, 1898
FokI	GGATG	3 cut(s)	266, 344, 1457
FriOI	GRGCYC	2 cut(s)	926, 1650
FspBI	CTAG	5 cut(s)	44, 77, 560, 1353, 1904
GsaI	CCCAGC	1 cut(s)	343
GsuI	CTGGAG	1 cut(s)	701
HaeII	RGCGCY	3 cut(s)	144, 1314, 1577
HaeIII	GGCC	4 cut(s)	414, 527, 1058, 1364
HapII	CCGG	4 cut(s)	327, 927, 1170, 1577
HgaI	GACGC	7 cut(s)	28, 379, 802, 882, 902, 1036, 1225
Hin1I	GRCGYC	8 cut(s)	141, 270, 390, 813, 874, 1028, 1311, 1574
Hin1II	CATG	4 cut(s)	62, 439, 1332, 1573
HincII	GTYRAC	3 cut(s)	313, 1850, 1899
HindII	GTYRAC	3 cut(s)	313, 1850, 1899
HindIII	AAGCTT	2 cut(s)	1610, 1866
HpaII	CCGG	4 cut(s)	327, 927, 1170, 1577
HphI	GGTGA	7 cut(s)	256, 409, 460, 723, 941, 1156, 1685
Hpy166II	GTNNAC	8 cut(s)	313, 556, 618, 648, 1240, 1264, 1850, 1899
Hpy188III	TCNNGA	4 cut(s)	364, 1227, 1656, 1904
Hpy8I	GTNNAC	8 cut(s)	313, 556, 618, 648, 1240, 1264, 1850, 1899
HpyAV	CCTTC	8 cut(s)	711, 862, 1126, 1135, 1287, 1514, 1715, 1773
HpyCH4III	ACNGT	2 cut(s)	295, 1847
HpyCH4IV	ACGT	6 cut(s)	129, 270, 566, 1158, 1359, 1548
HpyCH4V	TGCA	8 cut(s)	50, 58, 135, 156, 439, 1051, 1448, 1625
HpyF3I	CTNAG	5 cut(s)	1809, 1818, 1836, 1926, 1934
HpySE526I	ACGT	6 cut(s)	129, 270, 566, 1158, 1359, 1548
Hsp92I	GRCGYC	8 cut(s)	141, 270, 390, 813, 874, 1028, 1311, 1574
Hsp92II	CATG	4 cut(s)	62, 439, 1332, 1573
KasI	GGCGCC	3 cut(s)	140, 1310, 1573
Ksp22I	TGATCA	2 cut(s)	1146, 1599
Kzo9I	GATC	9 cut(s)	1146, 1179, 1197, 1407, 1599, 1759, 1839, 1912, 1930
LguI	GCTCTTC	3 cut(s)	790, 1657, 1674
Lsp1109I	GCAGC	6 cut(s)	62, 76, 100, 641, 766, 1440
LweI	GCATC	6 cut(s)	165, 491, 546, 828, 1435, 1912
MaeI	CTAG	5 cut(s)	44, 77, 560, 1353, 1904
MaeII	ACGT	6 cut(s)	129, 270, 566, 1158, 1359, 1548
MaeIII	GTNAC	4 cut(s)	562, 929, 1355, 1947
MalI	GATC	9 cut(s)	1148, 1181, 1199, 1409, 1601, 1761, 1841, 1914, 1932
MbiI	CCGCTC	2 cut(s)	177, 777
MboI	GATC	9 cut(s)	1146, 1179, 1197, 1407, 1599, 1759, 1839, 1912, 1930
MflI	RGATCY	3 cut(s)	1759, 1912, 1930
MhlI	GDGCHC	3 cut(s)	926, 1650, 1686
MlsI	TGGCCA	1 cut(s)	1364
MluCI	AATT	7 cut(s)	1008, 1037, 1064, 1387, 1471, 1743, 1954
MluNI	TGGCCA	1 cut(s)	1364
Mly113I	GGCGCC	3 cut(s)	141, 1311, 1574
MlyI	GAGTC	8 cut(s)	221, 623, 1028, 1085, 1215, 1709, 1870, 1894
MmeI	TCCRAC	8 cut(s)	399, 465, 813, 993, 1104, 1233, 1479, 1623
Mox20I	TGGCCA	1 cut(s)	1364
MscI	TGGCCA	1 cut(s)	1364
MseI	TTAA	2 cut(s)	1005, 1746
Msp20I	TGGCCA	1 cut(s)	1364
MspA1I	CMGCKG	2 cut(s)	53, 999
MspI	CCGG	4 cut(s)	327, 927, 1170, 1577
MspR9I	CCNGG	4 cut(s)	410, 524, 1442, 1793
MvaI	CCWGG	4 cut(s)	410, 524, 1442, 1793
MvnI	CGCG	1 cut(s)	627
NarI	GGCGCC	3 cut(s)	141, 1311, 1574
NdeII	GATC	9 cut(s)	1146, 1179, 1197, 1407, 1599, 1759, 1839, 1912, 1930
NlaIII	CATG	4 cut(s)	62, 439, 1332, 1573
NlaIV	GGNNCC	7 cut(s)	142, 684, 1096, 1312, 1575, 1761, 1914
NmeAIII	GCCGAG	1 cut(s)	798
NmuCI	GTSAC	4 cut(s)	562, 929, 1355, 1947
PauI	GCGCGC	1 cut(s)	625
PciSI	GCTCTTC	3 cut(s)	790, 1657, 1674
PcsI	WCGNNNNNNNCGW	3 cut(s)	1098, 1125, 1134
PfeI	GAWTC	4 cut(s)	1086, 1230, 1888, 1940
PflFI	GACNNNGTC	1 cut(s)	293
PfoI	TCCNGGA	1 cut(s)	1440
PleI	GAGTC	8 cut(s)	221, 622, 1027, 1084, 1215, 1708, 1870, 1894
PluTI	GGCGCC	3 cut(s)	144, 1314, 1577
PmaCI	CACGTG	2 cut(s)	567, 1549
PmlI	CACGTG	2 cut(s)	567, 1549
PpsI	GAGTC	8 cut(s)	221, 622, 1027, 1084, 1215, 1708, 1870, 1894
Ppu21I	YACGTR	2 cut(s)	567, 1549
Psp124BI	GAGCTC	2 cut(s)	926, 1650
Psp6I	CCWGG	4 cut(s)	408, 522, 1440, 1791
PspCI	CACGTG	2 cut(s)	567, 1549
PspFI	CCCAGC	1 cut(s)	339
PspGI	CCWGG	4 cut(s)	408, 522, 1440, 1791
PspN4I	GGNNCC	7 cut(s)	142, 684, 1096, 1312, 1575, 1761, 1914
PspPI	GGNCC	3 cut(s)	412, 1056, 1789
PstI	CTGCAG	1 cut(s)	1053
PsuI	RGATCY	3 cut(s)	1759, 1912, 1930
PsyI	GACNNNGTC	1 cut(s)	293
PteI	GCGCGC	1 cut(s)	625
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	3 cut(s)	1558, 1583, 1781
RsaNI	GTAC	3 cut(s)	1557, 1582, 1780
SacI	GAGCTC	2 cut(s)	926, 1650
SalI	GTCGAC	2 cut(s)	1848, 1897
SapI	GCTCTTC	3 cut(s)	790, 1657, 1674
SaqAI	TTAA	2 cut(s)	1005, 1746
Sau3AI	GATC	9 cut(s)	1146, 1179, 1197, 1407, 1599, 1759, 1839, 1912, 1930
Sau96I	GGNCC	3 cut(s)	412, 1056, 1789
SchI	GAGTC	8 cut(s)	221, 623, 1028, 1085, 1215, 1709, 1870, 1894
ScrFI	CCNGG	4 cut(s)	410, 524, 1442, 1793
SduI	GDGCHC	3 cut(s)	926, 1650, 1686
SfaNI	GCATC	6 cut(s)	165, 491, 546, 828, 1435, 1912
SfcI	CTRYAG	1 cut(s)	1049
SfoI	GGCGCC	3 cut(s)	142, 1312, 1575
SinI	GGWCC	1 cut(s)	1789
SmlI	CTYRAG	4 cut(s)	362, 479, 1453, 1863
SmoI	CTYRAG	4 cut(s)	362, 479, 1453, 1863
SpeI	ACTAGT	1 cut(s)	43
Sse9I	AATT	7 cut(s)	1008, 1037, 1064, 1387, 1471, 1743, 1954
SspDI	GGCGCC	3 cut(s)	140, 1310, 1573
SspMI	CTAG	5 cut(s)	44, 77, 560, 1353, 1904
SstI	GAGCTC	2 cut(s)	926, 1650
StyD4I	CCNGG	4 cut(s)	408, 522, 1440, 1791
StyI	CCWWGG	2 cut(s)	1243, 1461
TaaI	ACNGT	2 cut(s)	295, 1847
TaiI	ACGT	6 cut(s)	132, 273, 569, 1161, 1362, 1551
TaqI	TCGA	9 cut(s)	93, 183, 225, 1119, 1494, 1802, 1849, 1883, 1898
TaqII	GACCGA	1 cut(s)	474
TasI	AATT	7 cut(s)	1008, 1037, 1064, 1387, 1471, 1743, 1954
TatI	WGTACW	1 cut(s)	1581
TauI	GCSGC	8 cut(s)	521, 530, 780, 783, 851, 879, 882, 1136
TfiI	GAWTC	4 cut(s)	1086, 1230, 1888, 1940
Tru1I	TTAA	2 cut(s)	1005, 1746
Tru9I	TTAA	2 cut(s)	1005, 1746
TscAI	CASTG	1 cut(s)	1372
TseFI	GTSAC	4 cut(s)	562, 929, 1355, 1947
TseI	GCWGC	6 cut(s)	50, 64, 88, 629, 754, 1428
Tsp45I	GTSAC	4 cut(s)	562, 929, 1355, 1947
TspDTI	ATGAA	6 cut(s)	17, 23, 796, 1292, 1533, 1692
TspGWI	ACGGA	3 cut(s)	729, 1090, 1608
TspRI	CASTG	1 cut(s)	1372
Tth111I	GACNNNGTC	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	1789
XapI	RAATTY	1 cut(s)	1037
XbaI	TCTAGA	1 cut(s)	1903
XcmI	CCANNNNNNNNNTGG	2 cut(s)	481, 1477
XmiI	GTMKAC	4 cut(s)	555, 1263, 1849, 1898
XspI	CTAG	5 cut(s)	44, 77, 560, 1353, 1904
ZraI	GACGTC	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.