AT2G34357

NUC173 domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
14498590 .. 14505809
7220 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G34357.1

Sequence Viewer

Length: 3843 bp
ATGGAATTATTATGTGATGACATTGGAACCAGCATGTGCCTTACACCCTCAGAACCGGACCTGCCTGTTTCTGAAGATTTTGGGGAGTATATGCGCTCTCGCTTATCGCAGTCCAAAAGACCAGACCATGAACATCTATGCGCTGTCATCGAGGAGTTATCAAAAACTCTGGCTGAAGATAATCATCGTCGGACACCTGTTGCTTACTTTGCCTGCACATGCAGGTCGCTAGACAGCCTCTTTTCAGCACATGCTGAACCACCTGTAGATGTCGTCCAGCCACATATTGTCATCCTTTCCCTTGTGTTCCCTAAAGTCTCAGCAGGAGTACTGAAGAGGGATGGGTTGGCTTTGCGTCTCGTCCTCAATGTTCTGCGTCTGAAATCAGCCACGCCTGAGTGCTTGATTTCGGGATTGAAGTGTTTGGTTCACCTTCTCACAACGGTTGAGTCCATTATGGTGAACGAAGGCTCTGATTCCTACAACATCTTACTGAATTTTGTAACTCATTCAGACGGAAAGGTAAGAAAGCTAGCAAGCTCCTGTCTCCGTGATGTCCTGCAGAAATCCCATGGAACAAAGGCCTGGCAATCAGTCAGTGGAGCTATTACAGAAATGTTCCAGAACTATTTAGACCTCGCCCATAAATCGGAAGTGGGTTCTACCGAAGGAGCCAGAGGGGCAAAGCAAGTGCTTTACATTCTTAGCACTCTAAAAGAATGCTTGGCCTTGATGTCAAAAAAGCACATTGCTACTCTGATTGAGGGATTTAAGGTGCTGATGATTCTTCGCGATCCATACATTACAAGGCCAGTGATAGACTCTTTAAATGCAGTTTGTCTCAATCCAACCTCCGAGGTTCCGGTTGAGGCGCTGCTCGAAGTGTTATCTCTTGCGGCTGGACTGTTCTCGGGACATGAAACATCTGCTGATGCCATGACCTTTACAGCACGTTTACTGAAAGTTGGGATGACTAGGAGTTTTACCCTAAACAGAGATCTTTGTGTGGTTAAACTTCCTAGTGTGTTCAATGGTCTGAATGATATTATTGCATCTGAACACGAGGAGGCTATCTTTGCAGCAACTGATGCGTTGAAGAGTTTGATATTTTCATGTATTGACGAAAGCTTGATCAGAGAAGGTGTCAATGAAATCCGGAATTCAAACTTGAATGTAAGGAAGCCTAGTCCAACAGTCATCGAAAAGCTGTGTGCAACAGTTGAGAGCTTGCTTGATTACAAGTACCATGCAGTCTGGGATATGGCTTTTCAAGTAGTTTCAGCAATGTTTGATAAATTAGGTGAACATTCTGCATATTTTATGAGGAACACCCTCCAGGGTTTATCTGATATGCAAGATTTACCTGATGAAGGATTTCCTTACCGGAAGCAGTTGCATGAGTGTGTAGGATCAGCCCTTGGTGCTATGGGACCTGAAACATTTTTAAGCATTGTGCGTTTAAACCTTGAAGCTAATGATCTGTCTGAGGTAAAAGTTTGGCTCTTCCCAATCTTGAAGCAGTACACAGTTGGAGGACGCCTAAGTTTCTTCACAGAGGCTATTTTTAGCATGGTCGAAACAATGAGCCACAAAGCTCAAAAGCTCAAGCTACAAGGTCTTCCTGTAGCATCCAGGAGTGTGGATTCTCTCGTATATTCATTATGGGCTTTGTTACCTTCATTCTGTAATTATCCCGTGGATACTGTGGAGAGTTTTGCCGATCTGGGGCGAATATTATGTGGAGTTCTTCAAACACAGGCTGAGACCCATGGAATTATATGTGCCAGTTTGAATATTCTGATTCAACAAAATAAGGAAGTTGTTGAGGGGAAAGAAGTACCTACTAATGATGCTAGTCCTGCTATGCAACGAGCTACTGCTCGTTATGATTCACAGCATGCGGCAGCTAATTTAAAAGTTCTGCGGTTATGTGCTCCTAAATTATTGGATGTTTTGTCAAGGATATTTCATGAATGTAGCAAAGATGATGGCGGTTCTCTTCAGTCTGCGATAGGTAACTTAGCTTCCATAGCGGAGAAAAAGACTGTTTCAAAGCTACTTTTCAAGACTCTGCAAGAGCTTTTAGAGGCTACCAAAACTGCCATTGCACAAGATGAAAGTCCTGTTAGTGGGATGGATGTGGATAACACCGCAGACAAAAATTCTTCTTCCAACTTAAGGGCAAGGTTGTTTGATCTGTTAGTTTCACTCTTACCGGGTTTGGATGGTCAAGAAGTAGATACCATATTCAGTTCTCTGAAGCCTGCAATGCAGGATTCCAAGGGCCTAATTCAAAAGAAAGCGTACAAAGTTCTTTCGGTCATTTTGAAGAGTTCTGATGGATTTGTTTCAAAGAACCTCGAGGAGTTGCTTGTGCTGATGCACAATATATGCCATGTCTCTGCCAAACGCCATAAACTTGATTGTTTATACTTCCTGTTAGCTCATGCATCAAGGACTGATGATTTAAAGGAGAGAAAAGACATTGTTTCTTCTTTTCTACCCGAAGTTATACTTGCTTTAAAGGAGGTAAATAAAAAAACAAGAAACAGAGCCTATGACGTGCTTGTTCAGATTGGTCATGCATACGCAGATGAGGAGAATGGTGGAGACAACGAGAAGTTGCATGGGTACTTCGATATGGTGGTTGGTTGCTTGGCTGGCGAAAAACCTCAAATGATTAGTGCTGCTGTCAAGGGTGTAGCTCGTTTGACATATGAGTTCTCCGATCTCATATCTAGTGCTTACAATTTACTTCCTTCAACATTTCTTCTCCTCCAGAGGAAAAATAAAGAAATTACAAAAGCAAATTTAGGTTTGTTGAAGGTGTTGGTGGCTAAATCACCCGTTGAAGGACTACACGCAAATTTAAAGAGCATGGTTGAAGGCTTACTAAAGTGGCCAGAAGGAACAAAAAATCTGTTCAAAGCAAAGGTGAGGCTTCTGTTGGAGATGCTCATCAAGAAATGTGGCACGGAGGCTGTCAAGTCTGTGATGCCTGAGGAACATATGAAACTCCTGACAAACATCCGAAAGATCAAGGAACGTAAAGAGAAAAAATATGCAGCTGGCTCTGACATCAGTAAATCGCAGCATTCAAAAGATACTTCATCAAAGGTTAGCAGGTGGAATGATACCAAGATATTTTCTGATGTATACGCGGACAGTGAGGACAGTGACGGAGACGACATGGATGCGGAGTCTCATGGCCGCAGCAAGGCTTCCTCTTTGTTAAAATCCAAGGCATCCGCTTTGAGATCCAAGAAAAGTCGGAACCAGAGTCATCTTGAAGTGGATGAGTCAGATGATGAACCGCTTGACTTAATGGATCAGCACAAAACAAGATTAGCTCTTCGGTCAAGTGAACTTCGCAAACGGAAAGCTGACTCGGATGAAGAAGCAGAGTTTGATGTGGAAGGGCGGCTAGTTATTCGTGAAGGAGAGAGGTCTAAAAGGAAGGAACTATCTGATGCAGATTCAGATGCCAAAAGTAGCAAAGGCAGCCGTTTCTCTGGAAACTCATCCAAGAAGAACCAAAAGCGGATGAAGACATCAGAGTCTGGATACGCTTACACAGGCAAAGAGTATGCAAGCAAAAAGGCAAGTGGCGATCTTAAGAAGAAAGATAAACTTGAACCATATGCCTATTGGCCACTCGATCGCAAGATGATGAGCCGTAGACCAGAGCAACGGGCAGTTGCAGTGAGAGGGATGTCAAGTGTGGTCAAGATGGCAAAGAAAATGGAAGGCAAGAGCGCTGCAGAAGCACTTGCCACCACCAAGTTCAAAAAATTCAAGAGGAGTGGTCAGAAGAAATCAGCTGGGAAGAAGAAAAACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1280

Amino Acids

141.79

Weight (kDa)

8.71

Isoelectric Point (pI)

46.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HEAT_RRP12_N PF25772 16 - 287 6.5e-85 RRP12-like, N-terminal HEAT repeats
RRP12_HEAT PF08161 352 - 657 3.6e-80 Ribosomal RNA-processing protein 12, HEAT repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 3114
AasI GACNNNNNNGTC 1 cut(s) 3556
AbsI CCTCGAGG 1 cut(s) 2360
Acc36I ACCTGC 3 cut(s) 69, 213, 3114
AccI GTMKAC 2 cut(s) 3156, 3679
AccII CGCG 2 cut(s) 792, 3161
AccIII TCCGGA 1 cut(s) 1155
AclWI GGATC 4 cut(s) 788, 1417, 3252, 3336
AcoI YGGCCR 3 cut(s) 2900, 3208, 3650
AcsI RAATTY 6 cut(s) 496, 1159, 2161, 2809, 2866, 3791
AcuI CTGAAG 5 cut(s) 93, 195, 353, 1985, 2279
AcyI GRCGYC 1 cut(s) 1537
AfaI GTAC 6 cut(s) 330, 1244, 1523, 1839, 2306, 2633
AfeI AGCGCT 1 cut(s) 3757
AfiI CCNNNNNNNGG 7 cut(s) 649, 1370, 1725, 2129, 2178, 2852, 3217
AflII CTTAAG 2 cut(s) 2176, 3614
AjiI CACGTC 1 cut(s) 2563
AjnI CCWGG 3 cut(s) 584, 1335, 1631
Alw21I GWGCWC 1 cut(s) 1936
Alw26I GTCTC 9 cut(s) 322, 362, 551, 845, 1757, 2404, 2604, 3177, 3207
AlwI GGATC 4 cut(s) 788, 1417, 3252, 3336
AlwNI CAGNNNCTG 2 cut(s) 1085, 3560
Ama87I CYCGRG 2 cut(s) 910, 2360
Aor13HI TCCGGA 1 cut(s) 1155
Aor51HI AGCGCT 1 cut(s) 3757
AoxI GGCC 7 cut(s) 582, 726, 809, 2284, 2900, 3208, 3650
ApeKI GCWGC 9 cut(s) 874, 1079, 1904, 2687, 3065, 3091, 3213, 3501, 3758
ApoI RAATTY 6 cut(s) 496, 1159, 2161, 2809, 2866, 3791
Asp700I GAANNNNTTC 1 cut(s) 1374
AspLEI GCGC 4 cut(s) 96, 143, 874, 3758
AspS9I GGNCC 3 cut(s) 58, 1430, 2284
AsuC2I CCSGG 1 cut(s) 2217
AsuHPI GGTGA 5 cut(s) 422, 472, 1313, 2835, 2947
AsuNHI GCTAGC 1 cut(s) 532
AvaI CYCGRG 2 cut(s) 910, 2360
AvaII GGWCC 2 cut(s) 58, 1430
AxyI CCTNAGG 1 cut(s) 3000
BalI TGGCCA 2 cut(s) 2902, 3652
BarI GAAGNNNNNNTAC 2 cut(s) 2008, 2040
BauI CACGAG 1 cut(s) 1061
BbsI GAAGAC 2 cut(s) 1610, 3554
Bbv12I GWGCWC 1 cut(s) 1936
BbvI GCAGC 9 cut(s) 861, 1091, 1916, 2674, 3077, 3103, 3225, 3513, 3745
BccI CCATC 6 cut(s) 335, 1982, 2128, 2219, 2333, 3724
BceAI ACGGC 2 cut(s) 3489, 3660
BcgI CGANNNNNNTGC 2 cut(s) 3176, 3210
BciT130I CCWGG 3 cut(s) 586, 1337, 1633
BciVI GTATCC 2 cut(s) 1693, 3557
BclI TGATCA 1 cut(s) 1131
BcnI CCSGG 1 cut(s) 2217
BcoDI GTCTC 9 cut(s) 322, 362, 551, 845, 1757, 2404, 2604, 3177, 3207
BfaI CTAG 8 cut(s) 230, 533, 975, 1020, 1185, 1854, 2739, 3425
BfmI CTRYAG 4 cut(s) 264, 560, 1623, 3759
BfoI RGCGCY 2 cut(s) 875, 3759
BfrI CTTAAG 2 cut(s) 2176, 3614
BfuAI ACCTGC 3 cut(s) 69, 213, 3114
BfuI GTATCC 2 cut(s) 1693, 3557
BglI GCCNNNNNGGC 1 cut(s) 680
BglII AGATCT 1 cut(s) 997
BmcAI AGTACT 1 cut(s) 330
Bme1390I CCNGG 4 cut(s) 586, 1337, 1633, 2217
Bme18I GGWCC 2 cut(s) 58, 1430
BmeT110I CYCGRG 2 cut(s) 910, 2360
BmgBI CACGTC 1 cut(s) 2563
BmgT120I GGNCC 3 cut(s) 58, 1430, 2284
BmiI GGNNCC 5 cut(s) 28, 673, 861, 1431, 3275
BmrFI CCNGG 4 cut(s) 586, 1337, 1633, 2217
BmtI GCTAGC 1 cut(s) 536
BpiI GAAGAC 2 cut(s) 1610, 3554
BpmI CTGGAG 2 cut(s) 1319, 2762
BpuEI CTTGAG 1 cut(s) 1589
BpuMI CCSGG 1 cut(s) 2217
BsaBI GATNNNNATC 2 cut(s) 183, 2957
BsaHI GRCGYC 1 cut(s) 1537
BsaI GGTCTC 1 cut(s) 1757
BsaJI CCNNGG 8 cut(s) 571, 855, 1336, 1417, 1695, 1768, 2280, 3240
BsaWI WCCGGW 4 cut(s) 55, 862, 1155, 1383
Bsc4I CCNNNNNNNGG 7 cut(s) 649, 1370, 1725, 2129, 2178, 2852, 3217
Bse1I ACTGG 2 cut(s) 812, 1785
Bse21I CCTNAGG 1 cut(s) 3000
Bse3DI GCAATG 4 cut(s) 747, 1290, 2103, 2274
Bse8I GATNNNNATC 2 cut(s) 183, 2957
BseAI TCCGGA 1 cut(s) 1155
BseBI CCWGG 3 cut(s) 586, 1337, 1633
BseDI CCNNGG 8 cut(s) 571, 855, 1336, 1417, 1695, 1768, 2280, 3240
BseJI GATNNNNATC 2 cut(s) 183, 2957
BseLI CCNNNNNNNGG 7 cut(s) 649, 1370, 1725, 2129, 2178, 2852, 3217
BseMI GCAATG 4 cut(s) 747, 1290, 2103, 2274
BseMII CTCAG 6 cut(s) 63, 333, 387, 1476, 1752, 2991
BseNI ACTGG 2 cut(s) 812, 1785
BseRI GAGGAG 6 cut(s) 167, 1079, 2378, 2612, 2765, 3814
BseXI GCAGC 9 cut(s) 861, 1091, 1916, 2674, 3077, 3103, 3225, 3513, 3745
BseYI CCCAGC 1 cut(s) 3821
BsgI GTGCAG 1 cut(s) 199
Bsh1236I CGCG 2 cut(s) 792, 3161
Bsh1285I CGRYCG 1 cut(s) 3661
BshFI GGCC 7 cut(s) 584, 728, 811, 2286, 2902, 3210, 3652
BsiEI CGRYCG 1 cut(s) 3661
BsiHKAI GWGCWC 1 cut(s) 1936
BsiHKCI CYCGRG 2 cut(s) 910, 2360
BsiSI CCGG 5 cut(s) 56, 863, 1156, 1384, 2216
BslFI GGGAC 2 cut(s) 927, 1443
BslI CCNNNNNNNGG 7 cut(s) 649, 1370, 1725, 2129, 2178, 2852, 3217
BsmAI GTCTC 9 cut(s) 322, 362, 551, 845, 1757, 2404, 2604, 3177, 3207
BsmBI CGTCTC 2 cut(s) 362, 3177
BsmFI GGGAC 2 cut(s) 927, 1443
BsmI GAATGC 2 cut(s) 725, 3094
BsnI GGCC 7 cut(s) 584, 728, 811, 2286, 2902, 3210, 3652
Bso31I GGTCTC 1 cut(s) 1757
BsoBI CYCGRG 2 cut(s) 910, 2360
Bsp1286I GDGCHC 1 cut(s) 1936
Bsp13I TCCGGA 1 cut(s) 1155
Bsp19I CCATGG 2 cut(s) 571, 1768
Bsp68I TCGCGA 1 cut(s) 792
BspANI GGCC 7 cut(s) 584, 728, 811, 2286, 2902, 3210, 3652
BspCNI CTCAG 6 cut(s) 62, 332, 388, 1477, 1753, 2992
BspEI TCCGGA 1 cut(s) 1155
BspFNI CGCG 2 cut(s) 792, 3161
BspHI TCATGA 1 cut(s) 1969
BspLI GGNNCC 5 cut(s) 28, 673, 861, 1431, 3275
BspMAI CTGCAG 2 cut(s) 564, 3763
BspMI ACCTGC 3 cut(s) 69, 213, 3114
BspOI GCTAGC 1 cut(s) 536
BspPI GGATC 4 cut(s) 788, 1417, 3252, 3336
BspQI GCTCTTC 2 cut(s) 1508, 3357
BspTI CTTAAG 2 cut(s) 2176, 3614
BspTNI GGTCTC 1 cut(s) 1757
BsrDI GCAATG 4 cut(s) 747, 1290, 2103, 2274
BsrI ACTGG 2 cut(s) 812, 1785
BssECI CCNNGG 8 cut(s) 571, 855, 1336, 1417, 1695, 1768, 2280, 3240
BssNAI GTATAC 1 cut(s) 3157
BssNI GRCGYC 1 cut(s) 1537
BssSI CACGAG 1 cut(s) 1061
BssT1I CCWWGG 5 cut(s) 571, 1417, 1768, 2280, 3240
Bst1107I GTATAC 1 cut(s) 3157
Bst2BI CACGAG 1 cut(s) 1061
Bst2UI CCWGG 3 cut(s) 586, 1337, 1633
Bst4CI ACNGT 9 cut(s) 445, 906, 1195, 1219, 1528, 1705, 2047, 3167, 3176
Bst6I CTCTTC 6 cut(s) 329, 1091, 1508, 2004, 2324, 3357
BstACI GRCGYC 1 cut(s) 1537
BstAFI CTTAAG 2 cut(s) 2176, 3614
BstAPI GCANNNNNTGC 1 cut(s) 1088
BstC8I GCNNGC 9 cut(s) 214, 534, 538, 1229, 1899, 2265, 2662, 3070, 3592
BstDEI CTNAG 9 cut(s) 49, 319, 396, 704, 1485, 1541, 1761, 2020, 3000
BstDSI CCRYGG 3 cut(s) 571, 1695, 1768
BstENI CCTNNNNNAGG 1 cut(s) 1368
BstFNI CGCG 2 cut(s) 792, 3161
BstH2I RGCGCY 2 cut(s) 875, 3759
BstHHI GCGC 4 cut(s) 96, 143, 874, 3758
BstMAI GTCTC 9 cut(s) 322, 362, 551, 845, 1757, 2404, 2604, 3177, 3207
BstMCI CGRYCG 1 cut(s) 3661
BstNI CCWGG 3 cut(s) 586, 1337, 1633
BstNSI RCATGY 4 cut(s) 37, 222, 254, 1901
BstSCI CCNGG 4 cut(s) 584, 1335, 1631, 2215
BstSFI CTRYAG 4 cut(s) 264, 560, 1623, 3759
BstUI CGCG 2 cut(s) 792, 3161
BstV1I GCAGC 9 cut(s) 861, 1091, 1916, 2674, 3077, 3103, 3225, 3513, 3745
BstV2I GAAGAC 2 cut(s) 1610, 3554
BstX2I RGATCY 2 cut(s) 997, 3257
BstXI CCANNNNNNTGG 1 cut(s) 1639
BstYI RGATCY 2 cut(s) 997, 3257
BstZ17I GTATAC 1 cut(s) 3157
Bsu36I CCTNAGG 1 cut(s) 3000
BsuI GTATCC 2 cut(s) 1693, 3557
BsuRI GGCC 7 cut(s) 584, 728, 811, 2286, 2902, 3210, 3652
BtgI CCRYGG 3 cut(s) 571, 1695, 1768
BtrI CACGTC 1 cut(s) 2563
BtsI GCAGTG 1 cut(s) 3708
BtsIMutI CAGTG 5 cut(s) 604, 819, 3172, 3181, 3708
BtuMI TCGCGA 1 cut(s) 792
BveI ACCTGC 3 cut(s) 69, 213, 3114
Cac8I GCNNGC 9 cut(s) 214, 534, 538, 1229, 1899, 2265, 2662, 3070, 3592
CaiI CAGNNNCTG 2 cut(s) 1085, 3560
CciI TCATGA 1 cut(s) 1969
CfoI GCGC 4 cut(s) 96, 143, 874, 3758
Cfr13I GGNCC 3 cut(s) 58, 1430, 2284
CseI GACGC 3 cut(s) 344, 365, 1545
Csp6I GTAC 6 cut(s) 329, 1243, 1522, 1838, 2305, 2632
CspCI CAANNNNNGTGG 4 cut(s) 2950, 2985, 3784, 3819
CviQI GTAC 6 cut(s) 329, 1243, 1522, 1838, 2305, 2632
DdeI CTNAG 9 cut(s) 49, 319, 396, 704, 1485, 1541, 1761, 2020, 3000
DraI TTTAAA 6 cut(s) 828, 1461, 1914, 2469, 2523, 2871
DrdI GACNNNNNNGTC 1 cut(s) 3556
DseDI GACNNNNNNGTC 1 cut(s) 3556
EaeI YGGCCR 3 cut(s) 2900, 3208, 3650
Eam1104I CTCTTC 6 cut(s) 329, 1091, 1508, 2004, 2324, 3357
EarI CTCTTC 6 cut(s) 329, 1091, 1508, 2004, 2324, 3357
Eco130I CCWWGG 5 cut(s) 571, 1417, 1768, 2280, 3240
Eco147I AGGCCT 1 cut(s) 584
Eco31I GGTCTC 1 cut(s) 1757
Eco47I GGWCC 2 cut(s) 58, 1430
Eco47III AGCGCT 1 cut(s) 3757
Eco57I CTGAAG 5 cut(s) 93, 195, 353, 1985, 2279
Eco81I CCTNAGG 1 cut(s) 3000
Eco88I CYCGRG 2 cut(s) 910, 2360
EcoNI CCTNNNNNAGG 1 cut(s) 1368
EcoO109I RGGNCCY 2 cut(s) 1430, 2284
EcoRI GAATTC 1 cut(s) 1159
EcoRII CCWGG 3 cut(s) 584, 1335, 1631
EcoT14I CCWWGG 5 cut(s) 571, 1417, 1768, 2280, 3240
EcoT22I ATGCAT 2 cut(s) 2452, 2587
ErhI CCWWGG 5 cut(s) 571, 1417, 1768, 2280, 3240
Esp3I CGTCTC 2 cut(s) 362, 3177
FalI AAGNNNNNCTT 4 cut(s) 2499, 2531, 3615, 3647
FaqI GGGAC 2 cut(s) 927, 1443
FauNDI CATATG 3 cut(s) 2716, 3009, 3640
FbaI TGATCA 1 cut(s) 1131
FblI GTMKAC 2 cut(s) 3156, 3679
FspBI CTAG 8 cut(s) 230, 533, 975, 1020, 1185, 1854, 2739, 3425
GlaI GCGC 4 cut(s) 95, 142, 873, 3757
GsaI CCCAGC 1 cut(s) 3825
GsuI CTGGAG 2 cut(s) 1319, 2762
HaeII RGCGCY 2 cut(s) 875, 3759
HaeIII GGCC 7 cut(s) 584, 728, 811, 2286, 2902, 3210, 3652
HapII CCGG 5 cut(s) 56, 863, 1156, 1384, 2216
HgaI GACGC 3 cut(s) 344, 365, 1545
HhaI GCGC 4 cut(s) 96, 143, 874, 3758
Hin1I GRCGYC 1 cut(s) 1537
Hin6I GCGC 4 cut(s) 94, 141, 872, 3756
HinP1I GCGC 4 cut(s) 94, 141, 872, 3756
HindIII AAGCTT 1 cut(s) 1126
HpaII CCGG 5 cut(s) 56, 863, 1156, 1384, 2216
HphI GGTGA 5 cut(s) 422, 472, 1313, 2835, 2947
Hpy166II GTNNAC 8 cut(s) 430, 463, 956, 1304, 1524, 3157, 3365, 3680
Hpy8I GTNNAC 8 cut(s) 430, 463, 956, 1304, 1524, 3157, 3365, 3680
Hpy99I CGWCG 1 cut(s) 192
HpyCH4III ACNGT 9 cut(s) 445, 906, 1195, 1219, 1528, 1705, 2047, 3167, 3176
HpyCH4IV ACGT 3 cut(s) 952, 2562, 3046
HpyF3I CTNAG 9 cut(s) 49, 319, 396, 704, 1485, 1541, 1761, 2020, 3000
HpySE526I ACGT 3 cut(s) 952, 2562, 3046
Hsp92I GRCGYC 1 cut(s) 1537
HspAI GCGC 4 cut(s) 94, 141, 872, 3756
Kpn2I TCCGGA 1 cut(s) 1155
Ksp22I TGATCA 1 cut(s) 1131
LguI GCTCTTC 2 cut(s) 1508, 3357
LmnI GCTCC 4 cut(s) 545, 602, 671, 1939
Lsp1109I GCAGC 9 cut(s) 861, 1091, 1916, 2674, 3077, 3103, 3225, 3513, 3745
MaeI CTAG 8 cut(s) 230, 533, 975, 1020, 1185, 1854, 2739, 3425
MaeII ACGT 3 cut(s) 952, 2562, 3046
MaeIII GTNAC 4 cut(s) 502, 1671, 2015, 3176
MflI RGATCY 2 cut(s) 997, 3257
MhlI GDGCHC 1 cut(s) 1936
MlsI TGGCCA 2 cut(s) 2902, 3652
MluNI TGGCCA 2 cut(s) 2902, 3652
MlyI GAGTC 8 cut(s) 458, 815, 2062, 3209, 3289, 3308, 3380, 3566
MmeI TCCRAC 7 cut(s) 170, 872, 1214, 1510, 2196, 2928, 3251
Mox20I TGGCCA 2 cut(s) 2902, 3652
Mph1103I ATGCAT 2 cut(s) 2452, 2587
MroI TCCGGA 1 cut(s) 1155
MroXI GAANNNNTTC 1 cut(s) 1374
MscI TGGCCA 2 cut(s) 2902, 3652
MslI CAYNNNNRTG 2 cut(s) 458, 1401
Msp20I TGGCCA 2 cut(s) 2902, 3652
MspA1I CMGCKG 2 cut(s) 3068, 3821
MspCI CTTAAG 2 cut(s) 2176, 3614
MspI CCGG 5 cut(s) 56, 863, 1156, 1384, 2216
MspR9I CCNGG 4 cut(s) 586, 1337, 1633, 2217
MssI GTTTAAAC 1 cut(s) 1461
Mva1269I GAATGC 2 cut(s) 725, 3094
MvaI CCWGG 3 cut(s) 586, 1337, 1633
MvnI CGCG 2 cut(s) 792, 3161
NciI CCSGG 1 cut(s) 2217
NcoI CCATGG 2 cut(s) 571, 1768
NdeI CATATG 3 cut(s) 2716, 3009, 3640
NheI GCTAGC 1 cut(s) 532
NlaIV GGNNCC 5 cut(s) 28, 673, 861, 1431, 3275
NmuCI GTSAC 1 cut(s) 3176
NruI TCGCGA 1 cut(s) 792
NsiI ATGCAT 2 cut(s) 2452, 2587
NspI RCATGY 4 cut(s) 37, 222, 254, 1901
PaeI GCATGC 1 cut(s) 1901
PaeR7I CTCGAG 1 cut(s) 2360
PagI TCATGA 1 cut(s) 1969
PaqCI CACCTGC 1 cut(s) 3114
PceI AGGCCT 1 cut(s) 584
PciSI GCTCTTC 2 cut(s) 1508, 3357
PctI GAATGC 2 cut(s) 725, 3094
PdmI GAANNNNTTC 1 cut(s) 1374
PfeI GAWTC 7 cut(s) 476, 784, 1643, 1801, 1889, 2276, 3476
PfoI TCCNGGA 1 cut(s) 1631
Ple19I CGATCG 1 cut(s) 3661
PleI GAGTC 8 cut(s) 457, 815, 2062, 3208, 3288, 3307, 3380, 3565
PmeI GTTTAAAC 1 cut(s) 1461
PpsI GAGTC 8 cut(s) 457, 815, 2062, 3208, 3288, 3307, 3380, 3565
PpuMI RGGWCCY 1 cut(s) 1430
Psp5II RGGWCCY 1 cut(s) 1430
Psp6I CCWGG 3 cut(s) 584, 1335, 1631
PspFI CCCAGC 1 cut(s) 3821
PspGI CCWGG 3 cut(s) 584, 1335, 1631
PspN4I GGNNCC 5 cut(s) 28, 673, 861, 1431, 3275
PspPI GGNCC 3 cut(s) 58, 1430, 2284
PspPPI RGGWCCY 1 cut(s) 1430
PspXI VCTCGAGB 1 cut(s) 2360
PstI CTGCAG 2 cut(s) 564, 3763
PstNI CAGNNNCTG 2 cut(s) 1085, 3560
PsuI RGATCY 2 cut(s) 997, 3257
PvuI CGATCG 1 cut(s) 3661
PvuII CAGCTG 2 cut(s) 3068, 3821
RruI TCGCGA 1 cut(s) 792
RsaI GTAC 6 cut(s) 330, 1244, 1523, 1839, 2306, 2633
RsaNI GTAC 6 cut(s) 329, 1243, 1522, 1838, 2305, 2632
RseI CAYNNNNRTG 2 cut(s) 458, 1401
SapI GCTCTTC 2 cut(s) 1508, 3357
Sau96I GGNCC 3 cut(s) 58, 1430, 2284
ScaI AGTACT 1 cut(s) 330
SchI GAGTC 8 cut(s) 458, 815, 2062, 3209, 3289, 3308, 3380, 3566
ScrFI CCNGG 4 cut(s) 586, 1337, 1633, 2217
SduI GDGCHC 1 cut(s) 1936
SfcI CTRYAG 4 cut(s) 264, 560, 1623, 3759
Sfr274I CTCGAG 1 cut(s) 2360
SinI GGWCC 2 cut(s) 58, 1430
SlaI CTCGAG 1 cut(s) 2360
SmiMI CAYNNNNRTG 2 cut(s) 458, 1401
SmlI CTYRAG 4 cut(s) 1604, 2176, 2360, 3614
SmoI CTYRAG 4 cut(s) 1604, 2176, 2360, 3614
SphI GCATGC 1 cut(s) 1901
SseBI AGGCCT 1 cut(s) 584
SspI AATATT 2 cut(s) 1734, 1795
SspMI CTAG 8 cut(s) 230, 533, 975, 1020, 1185, 1854, 2739, 3425
StuI AGGCCT 1 cut(s) 584
StyD4I CCNGG 4 cut(s) 584, 1335, 1631, 2215
StyI CCWWGG 5 cut(s) 571, 1417, 1768, 2280, 3240
TaaI ACNGT 9 cut(s) 445, 906, 1195, 1219, 1528, 1705, 2047, 3167, 3176
TaiI ACGT 3 cut(s) 955, 2565, 3049
TaqI TCGA 7 cut(s) 150, 879, 1200, 1575, 2361, 2637, 3657
TaqII GACCGA 2 cut(s) 2308, 3345
TatI WGTACW 2 cut(s) 328, 1521
TauI GCSGC 4 cut(s) 899, 1904, 3213, 3424
TfiI GAWTC 7 cut(s) 476, 784, 1643, 1801, 1889, 2276, 3476
TscAI CASTG 5 cut(s) 604, 819, 3172, 3181, 3708
TseFI GTSAC 1 cut(s) 3176
TseI GCWGC 9 cut(s) 874, 1079, 1904, 2687, 3065, 3091, 3213, 3501, 3758
Tsp45I GTSAC 1 cut(s) 3176
TspGWI ACGGA 5 cut(s) 531, 539, 2990, 3195, 3391
TspRI CASTG 5 cut(s) 604, 819, 3172, 3181, 3708
Vha464I CTTAAG 2 cut(s) 2176, 3614
VpaK11BI GGWCC 2 cut(s) 58, 1430
XagI CCTNNNNNAGG 1 cut(s) 1368
XapI RAATTY 6 cut(s) 496, 1159, 2161, 2809, 2866, 3791
XceI RCATGY 4 cut(s) 37, 222, 254, 1901
XcmI CCANNNNNNNNNTGG 1 cut(s) 3645
XhoI CTCGAG 1 cut(s) 2360
XmiI GTMKAC 2 cut(s) 3156, 3679
XmnI GAANNNNTTC 1 cut(s) 1374
XspI CTAG 8 cut(s) 230, 533, 975, 1020, 1185, 1854, 2739, 3425
ZrmI AGTACT 1 cut(s) 330
Zsp2I ATGCAT 2 cut(s) 2452, 2587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.