Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0006794

Physical Location & Seq

Genomic Coordinates Reverse (-)

7831775 .. 7834119

Gene Structure 2345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1098900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAACGCTACAATTTTTGCTTACGGGCAGACTAGTAGTGGTAAGACATTTACCATGAGAGGAATCACCAAAAATACAGTGAGGGACATCTTCGAACACATCAAGAATTTTTCAAGGAACGCCGCTTCTTGCACCTGCAGTGAAGGGATAACTAACTTATTTGAAAGGTTTCTTCTTCTTGCCGGTGGGTCAAAGGCAGATGCGAGTGAAGGACCCAAGGGAGCCCAGGAAGTCTTGTATGTTTTGGATGCTTTGAAAGAGTGCCTGTTTCTTGTGTCAATCAAGTGCAAAACCAACGTCCTCAAGTACTACAAAACTCTTTTGGAACTGCGCCAACCACTTGTTACAAAGCGCATAACAGATAGTTTGAATATACTTTGTCTCAATCCATCGGCAGACGTTTCTCCTGAAGTGTTGCTCGATCTATTATGCTCATTAGCTCTATCTGTCTCTACGAATGAGACGTCTGTGGATGGCATGACATTTACAGCTCGCTTGCTTGGTACTGGAATGGGGAAAGTTTATTCCCTTAATAGGCAAATACGTGTAGTTAAACTCCCTCTTGTATTCAATGCGCTTAAAGATGTGTTGGCTTCTGAGCATGAAGAATACAATTTTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUC173

Protein Analysis

208

Amino Acids

22.81

Weight (kDa)

8.44

Isoelectric Point (pI)

28.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	1 - 45	3.5e-11	Kinesin motor domain
Microtub_bd	PF16796	1 - 41	1.7e-07	Microtubule binding
HEAT_RRP12_N	PF25772	26 - 134	1.3e-32	RRP12-like, N-terminal HEAT repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34357
fragaria_vesca	FvH4_1g09210 FvH4_6g18960
malus_domestica	MD02G1098900.v1.1 MD02G1099100.v1.1 MD15G1221900.v1.1
prunus_persica	Prupe.6G204300_v2.0.a1 Prupe.6G204300_v2.0.a1 Prupe.6G204500_v2.0.a1 Prupe.7G186700_v2.0.a1 Prupe.7G186700_v2.0.a1 Prupe.7G193800_v2.0.a1
pyrus_communis	pycom02g07730 pycom15g19640
rosa_chinensis	RchiOBHm_Chr2g0095731
rosa_laevigata	RLG00000016587 RLG00000016588
rosa_multiflora	Rmu_sc0001309.1_g000002 Rmu_sc0001309.1_g000003
rosa_roxburghii	Rroxscaffold_2G00146140
rosa_rugosa	Rorug02G0052900
rosa_samantha	Rh2AG101100 Rh2BG102800 Rh2CG105200 Rh2DG102600
rosa_wichuraiana	Rw2G007670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	143
AatII	GACGTC	1 cut(s)	467
Acc36I	ACCTGC	1 cut(s)	143
AciI	CCGC	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	106
AcuI	CTGAAG	1 cut(s)	429
AcyI	GRCGYC	1 cut(s)	464
AfaI	GTAC	2 cut(s)	308, 505
AfiI	CCNNNNNNNGG	1 cut(s)	534
AflIII	ACRYGT	1 cut(s)	544
AgsI	TTSAA	5 cut(s)	114, 164, 256, 370, 571
AhlI	ACTAGT	1 cut(s)	32
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	2 cut(s)	440, 491
AluI	AGCT	2 cut(s)	440, 491
Alw26I	GTCTC	3 cut(s)	386, 454, 455
ApoI	RAATTY	1 cut(s)	106
ArsI	GACNNNNNNTTYG	4 cut(s)	282, 314, 449, 481
Asp700I	GAANNNNTTC	1 cut(s)	168
AspLEI	GCGC	3 cut(s)	333, 354, 577
AspS9I	GGNCC	1 cut(s)	212
AsuHPI	GGTGA	1 cut(s)	58
AsuII	TTCGAA	1 cut(s)	93
AvaII	GGWCC	1 cut(s)	212
BanII	GRGCYC	1 cut(s)	226
BccI	CCATC	2 cut(s)	397, 467
BciT130I	CCWGG	1 cut(s)	227
BcoDI	GTCTC	3 cut(s)	386, 454, 455
BcuI	ACTAGT	1 cut(s)	32
BfaI	CTAG	2 cut(s)	33, 622
BfmI	CTRYAG	1 cut(s)	136
BfuAI	ACCTGC	1 cut(s)	143
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
BmcAI	AGTACT	1 cut(s)	308
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	2 cut(s)	214, 223
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	2 cut(s)	190, 238
Bpu14I	TTCGAA	1 cut(s)	93
BpuEI	CTTGAG	1 cut(s)	287
BsaAI	YACGTR	1 cut(s)	545
BsaHI	GRCGYC	1 cut(s)	464
BsaJI	CCNNGG	2 cut(s)	216, 225
Bsc4I	CCNNNNNNNGG	1 cut(s)	534
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	1 cut(s)	511
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	2 cut(s)	216, 225
BseGI	GGATG	2 cut(s)	253, 478
BseLI	CCNNNNNNNGG	1 cut(s)	534
BseMII	CTCAG	1 cut(s)	588
BseNI	ACTGG	1 cut(s)	511
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	534
BsmAI	GTCTC	3 cut(s)	386, 454, 455
BsmBI	CGTCTC	1 cut(s)	455
BsmFI	GGGAC	1 cut(s)	98
Bsp119I	TTCGAA	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	421
BspACI	CCGC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	589
BspLI	GGNNCC	2 cut(s)	214, 223
BspMAI	CTGCAG	1 cut(s)	140
BspMI	ACCTGC	1 cut(s)	143
BspT104I	TTCGAA	1 cut(s)	93
BsrFI	RCCGGY	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	511
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	2 cut(s)	216, 225
BssMI	GATC	1 cut(s)	421
BssNI	GRCGYC	1 cut(s)	464
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	79
BstACI	GRCGYC	1 cut(s)	464
BstBAI	YACGTR	1 cut(s)	545
BstBI	TTCGAA	1 cut(s)	93
BstC8I	GCNNGC	2 cut(s)	493, 497
BstDEI	CTNAG	1 cut(s)	597
BstF5I	GGATG	2 cut(s)	253, 478
BstHHI	GCGC	3 cut(s)	333, 354, 577
BstKTI	GATC	1 cut(s)	424
BstMAI	GTCTC	3 cut(s)	386, 454, 455
BstMBI	GATC	1 cut(s)	421
BstNI	CCWGG	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	225
BstSFI	CTRYAG	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	253, 478
BtsI	GCAGTG	1 cut(s)	145
BtsIMutI	CAGTG	2 cut(s)	84, 145
BveI	ACCTGC	1 cut(s)	143
Cac8I	GCNNGC	2 cut(s)	493, 497
CfoI	GCGC	3 cut(s)	333, 354, 577
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	212
Csp6I	GTAC	2 cut(s)	307, 504
CviAII	CATG	3 cut(s)	55, 478, 602
CviJI	RGCY	4 cut(s)	224, 440, 491, 593
CviKI_1	RGCY	4 cut(s)	224, 440, 491, 593
CviQI	GTAC	2 cut(s)	307, 504
DdeI	CTNAG	1 cut(s)	597
DpnI	GATC	1 cut(s)	423
DpnII	GATC	1 cut(s)	421
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	429
EcoO109I	RGGNCCY	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	225
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	216
Esp3I	CGTCTC	1 cut(s)	455
FaeI	CATG	3 cut(s)	58, 481, 605
FaiI	YATR	7 cut(s)	56, 240, 356, 374, 430, 479, 603
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	3 cut(s)	54, 477, 601
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	2 cut(s)	260, 485
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	2 cut(s)	33, 622
GlaI	GCGC	3 cut(s)	332, 353, 576
GluI	GCNGC	1 cut(s)	123
HapII	CCGG	1 cut(s)	183
HhaI	GCGC	3 cut(s)	333, 354, 577
Hin1I	GRCGYC	1 cut(s)	464
Hin1II	CATG	3 cut(s)	58, 481, 605
Hin6I	GCGC	3 cut(s)	331, 352, 575
HinP1I	GCGC	3 cut(s)	331, 352, 575
HinfI	GANTC	1 cut(s)	63
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	1 cut(s)	58
Hpy188I	TCNGA	1 cut(s)	598
Hpy188III	TCNNGA	2 cut(s)	103, 407
HpyAV	CCTTC	2 cut(s)	137, 203
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4IV	ACGT	4 cut(s)	297, 399, 464, 544
HpyCH4V	TGCA	3 cut(s)	132, 138, 288
HpyF3I	CTNAG	1 cut(s)	597
HpySE526I	ACGT	4 cut(s)	297, 399, 464, 544
Hsp92I	GRCGYC	1 cut(s)	464
Hsp92II	CATG	3 cut(s)	58, 481, 605
HspAI	GCGC	3 cut(s)	331, 352, 575
Kzo9I	GATC	1 cut(s)	421
LmnI	GCTCC	1 cut(s)	221
LpnPI	CCDG	7 cut(s)	148, 196, 212, 239, 278, 420, 492
LweI	GCATC	2 cut(s)	190, 238
MaeI	CTAG	2 cut(s)	33, 622
MaeII	ACGT	4 cut(s)	297, 399, 464, 544
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	1 cut(s)	423
MboI	GATC	1 cut(s)	421
MboII	GAAGA	4 cut(s)	82, 164, 167, 617
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	3 cut(s)	12, 106, 613
MnlI	CCTC	4 cut(s)	53, 75, 311, 570
MroXI	GAANNNNTTC	1 cut(s)	168
MseI	TTAA	3 cut(s)	531, 552, 579
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	227
NdeII	GATC	1 cut(s)	421
NlaIII	CATG	3 cut(s)	58, 481, 605
NlaIV	GGNNCC	2 cut(s)	214, 223
NspV	TTCGAA	1 cut(s)	93
PaqCI	CACCTGC	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	1 cut(s)	461
PdmI	GAANNNNTTC	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	124
Ppu21I	YACGTR	1 cut(s)	545
PpuMI	RGGWCCY	1 cut(s)	212
Psp5II	RGGWCCY	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	2 cut(s)	214, 223
PspPI	GGNCC	1 cut(s)	212
PspPPI	RGGWCCY	1 cut(s)	212
PstI	CTGCAG	1 cut(s)	140
RsaI	GTAC	2 cut(s)	308, 505
RsaNI	GTAC	2 cut(s)	307, 504
SaqAI	TTAA	3 cut(s)	531, 552, 579
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	1 cut(s)	421
Sau96I	GGNCC	1 cut(s)	212
ScaI	AGTACT	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	226
SetI	ASST	8 cut(s)	137, 170, 300, 402, 442, 467, 493, 547
SfaNI	GCATC	2 cut(s)	190, 238
SfcI	CTRYAG	1 cut(s)	136
SfuI	TTCGAA	1 cut(s)	93
SinI	GGWCC	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
SpeI	ACTAGT	1 cut(s)	32
Sse9I	AATT	3 cut(s)	12, 106, 613
SsiI	CCGC	1 cut(s)	123
SspMI	CTAG	2 cut(s)	33, 622
StyD4I	CCNGG	1 cut(s)	225
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	79
TaiI	ACGT	4 cut(s)	300, 402, 467, 547
TaqI	TCGA	2 cut(s)	93, 420
TasI	AATT	3 cut(s)	12, 106, 613
TatI	WGTACW	1 cut(s)	306
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	63
Tru1I	TTAA	3 cut(s)	531, 552, 579
Tru9I	TTAA	3 cut(s)	531, 552, 579
TscAI	CASTG	2 cut(s)	84, 145
TspDTI	ATGAA	2 cut(s)	17, 618
TspRI	CASTG	2 cut(s)	84, 145
VpaK11BI	GGWCC	1 cut(s)	212
XapI	RAATTY	1 cut(s)	106
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	2 cut(s)	33, 622
ZraI	GACGTC	1 cut(s)	465
ZrmI	AGTACT	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.