Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006794

Physical Location & Seq

Genomic Coordinates Reverse (-)

7964544 .. 7967217

Gene Structure 2674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016587

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGCAGGCTAACAAGAAAACAAGAAACAAAGCATATGATATCCTTGTCCAGATTGGTCATGCTTGTGGGGATGAGGAGAAAGGCGGGAAAAAAGAGAACCTGTATCAATTCTTTAACATGGCTAATATAGGCTTGCTGAAGGTATTGGTTGCCAAATCACAAGCTGAGGGGTTGCAATTGCACTTGAAAAGCATGGTTGAAGCCTTGTTGAAGTGGCAAGATGATACTAAAACTCATTTCAAAGCCAAGATTAAGCTTCTACTAGAAATGCTCGTCAAGAAATGTGGGCTGGATGCTGTTAAGGCTGTCATGCCTCAAGAGCACATGAAACTACTTACCAACATTCGGAAGATTAAGGAACAAAAAGATAAGAAACAACAGGCTTCTAGATCGGAGGAAGCTAAATCTCATGCATCCAAAGCAAGTACGGCCAGGACTCTCCATTTCACAGTATTAGAATTATATATGCATATGAACAACACAGCATCTGTGCATATGCTAAGCAGATGGAACCATTCAAAAGTATTTTCTGATTTCGGTTATGAAGAAACTGATGATAGTAATACGGATTATATGGATTCCCAAACAGTCACTGGCCGGCGTGGCAAGGCTTCACATCTCAAATCTAAAGCATCTTCATCACGGGCCAAGAGTAGAACAAATAAGAACTTGCCTGGCCACTTATTTGATCAACTAGAAGATGAGCCTCTTGACTTGCTTGATCGGCGAAGAACAAGGTCCGGACTTCGATCATCAGAGAATTTAAAACGTAAAATGGAGTCTGATGAAGGGCCAGAGATAGACCCTGATGGGCGCCTCATAATTCATGAAGAATCAAACTCGTACAACGAAAAGCCATCTCATCCTGATTCAGATGCAAGGAGCGAAGCAGGAAGTCACTTCAAGAAGGCTGGTGGGGATTTGAAAAAGAAGGACAAGCTTGAACCATATGCGTATTGGCCACTTGATCGCAAGATGATGAGCCGCAGACCAGAGCATAGGGCTGCTGCCAGGAAAGGAATATCAAGTGTGGTTAGGATGACAAAGTCGCTTGAAGGGAAGAGTGCCTCAAGTATACTCACCAGTAAAGGCTTGAAGTTTAAAAGGGTCCAGAAGAAGGGCAGCAAGAGAAAAAGTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUC173

Protein Analysis

381

Amino Acids

43.18

Weight (kDa)

9.86

Isoelectric Point (pI)

51.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34357
fragaria_vesca	FvH4_1g09210 FvH4_6g18960
malus_domestica	MD02G1098900.v1.1 MD02G1099100.v1.1 MD15G1221900.v1.1
prunus_persica	Prupe.6G204300_v2.0.a1 Prupe.6G204300_v2.0.a1 Prupe.6G204500_v2.0.a1 Prupe.7G186700_v2.0.a1 Prupe.7G186700_v2.0.a1 Prupe.7G193800_v2.0.a1
pyrus_communis	pycom02g07730 pycom15g19640
rosa_chinensis	RchiOBHm_Chr2g0095731
rosa_laevigata	RLG00000016587 RLG00000016588
rosa_multiflora	Rmu_sc0001309.1_g000002 Rmu_sc0001309.1_g000003
rosa_roxburghii	Rroxscaffold_2G00146140
rosa_rugosa	Rorug02G0052900
rosa_samantha	Rh2AG101100 Rh2BG102800 Rh2CG105200 Rh2DG102600
rosa_wichuraiana	Rw2G007670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	813
AccI	GTMKAC	1 cut(s)	1075
AccIII	TCCGGA	1 cut(s)	740
AciI	CCGC	2 cut(s)	84, 985
AcoI	YGGCCR	4 cut(s)	429, 595, 676, 959
AcsI	RAATTY	1 cut(s)	760
AcuI	CTGAAG	1 cut(s)	158
AcyI	GRCGYC	1 cut(s)	814
AfaI	GTAC	2 cut(s)	427, 845
AfiI	CCNNNNNNNGG	2 cut(s)	345, 1117
AjnI	CCWGG	3 cut(s)	431, 673, 1010
AluBI	AGCT	4 cut(s)	164, 256, 401, 940
AluI	AGCT	4 cut(s)	164, 256, 401, 940
Alw21I	GWGCWC	1 cut(s)	324
AlwNI	CAGNNNCTG	2 cut(s)	488, 593
Aor13HI	TCCGGA	1 cut(s)	740
AoxI	GGCC	6 cut(s)	429, 595, 645, 676, 791, 959
ApeKI	GCWGC	3 cut(s)	1004, 1007, 1122
ApoI	RAATTY	1 cut(s)	760
AspLEI	GCGC	1 cut(s)	816
AspS9I	GGNCC	4 cut(s)	645, 738, 791, 1108
AsuHPI	GGTGA	1 cut(s)	1072
AvaII	GGWCC	2 cut(s)	738, 1108
BalI	TGGCCA	2 cut(s)	678, 961
BanI	GGYRCC	1 cut(s)	813
Bbv12I	GWGCWC	1 cut(s)	324
BbvCI	CCTCAGC	1 cut(s)	165
BbvI	GCAGC	3 cut(s)	991, 994, 1134
BccI	CCATC	3 cut(s)	501, 803, 865
BceAI	ACGGC	1 cut(s)	444
BciT130I	CCWGG	3 cut(s)	433, 675, 1012
BclI	TGATCA	1 cut(s)	688
BfaI	CTAG	3 cut(s)	263, 387, 695
BfoI	RGCGCY	1 cut(s)	817
BglI	GCCNNNNNGGC	1 cut(s)	603
BisI	GCNGC	4 cut(s)	985, 1005, 1008, 1123
BlpI	GCTNAGC	1 cut(s)	500
BlsI	GCNGC	4 cut(s)	986, 1006, 1009, 1124
Bme1390I	CCNGG	3 cut(s)	433, 675, 1012
Bme18I	GGWCC	2 cut(s)	738, 1108
BmgT120I	GGNCC	4 cut(s)	645, 738, 791, 1108
BmiI	GGNNCC	3 cut(s)	512, 815, 1109
BmrFI	CCNGG	3 cut(s)	433, 675, 1012
BmsI	GCATC	5 cut(s)	283, 422, 494, 641, 865
Bpu10I	CCTNAGC	1 cut(s)	165
Bpu1102I	GCTNAGC	1 cut(s)	500
BpuEI	CTTGAG	2 cut(s)	300, 1054
BsaHI	GRCGYC	1 cut(s)	814
BsaWI	WCCGGW	1 cut(s)	740
Bsc4I	CCNNNNNNNGG	2 cut(s)	345, 1117
Bse118I	RCCGGY	1 cut(s)	597
Bse1I	ACTGG	2 cut(s)	598, 1083
BseAI	TCCGGA	1 cut(s)	740
BseBI	CCWGG	3 cut(s)	433, 675, 1012
BseGI	GGATG	5 cut(s)	76, 298, 413, 862, 1044
BseLI	CCNNNNNNNGG	2 cut(s)	345, 1117
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	2 cut(s)	598, 1083
BseRI	GAGGAG	1 cut(s)	89
BseXI	GCAGC	3 cut(s)	991, 994, 1134
BshFI	GGCC	6 cut(s)	431, 597, 647, 678, 793, 961
BshNI	GGYRCC	1 cut(s)	813
BsiHKAI	GWGCWC	1 cut(s)	324
BsiSI	CCGG	2 cut(s)	598, 741
BslI	CCNNNNNNNGG	2 cut(s)	345, 1117
BsnI	GGCC	6 cut(s)	431, 597, 647, 678, 793, 961
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp13I	TCCGGA	1 cut(s)	740
Bsp143I	GATC	5 cut(s)	389, 688, 721, 749, 967
Bsp1720I	GCTNAGC	1 cut(s)	500
BspACI	CCGC	2 cut(s)	84, 985
BspANI	GGCC	6 cut(s)	431, 597, 647, 678, 793, 961
BspCNI	CTCAG	1 cut(s)	157
BspEI	TCCGGA	1 cut(s)	740
BspHI	TCATGA	1 cut(s)	826
BspLI	GGNNCC	3 cut(s)	512, 815, 1109
BspT107I	GGYRCC	1 cut(s)	813
BsrFI	RCCGGY	1 cut(s)	597
BsrI	ACTGG	2 cut(s)	598, 1083
BssAI	RCCGGY	1 cut(s)	597
BssMI	GATC	5 cut(s)	389, 688, 721, 749, 967
BssNAI	GTATAC	1 cut(s)	1076
BssNI	GRCGYC	1 cut(s)	814
Bst1107I	GTATAC	1 cut(s)	1076
Bst2UI	CCWGG	3 cut(s)	433, 675, 1012
Bst4CI	ACNGT	2 cut(s)	451, 589
Bst6I	CTCTTC	1 cut(s)	1055
BstACI	GRCGYC	1 cut(s)	814
BstC8I	GCNNGC	3 cut(s)	6, 134, 599
BstDEI	CTNAG	2 cut(s)	165, 500
BstF5I	GGATG	5 cut(s)	76, 298, 413, 862, 1044
BstH2I	RGCGCY	1 cut(s)	817
BstHHI	GCGC	1 cut(s)	816
BstKTI	GATC	5 cut(s)	392, 691, 724, 752, 970
BstMBI	GATC	5 cut(s)	389, 688, 721, 749, 967
BstMWI	GCNNNNNNNGC	6 cut(s)	302, 319, 419, 428, 603, 724
BstNI	CCWGG	3 cut(s)	433, 675, 1012
BstSCI	CCNGG	3 cut(s)	431, 673, 1010
BstV1I	GCAGC	3 cut(s)	991, 994, 1134
BstZ17I	GTATAC	1 cut(s)	1076
BsuRI	GGCC	6 cut(s)	431, 597, 647, 678, 793, 961
BtsCI	GGATG	5 cut(s)	76, 298, 413, 862, 1044
BtsIMutI	CAGTG	1 cut(s)	591
Cac8I	GCNNGC	3 cut(s)	6, 134, 599
CaiI	CAGNNNCTG	2 cut(s)	488, 593
CciI	TCATGA	1 cut(s)	826
CfoI	GCGC	1 cut(s)	816
Cfr10I	RCCGGY	1 cut(s)	597
Cfr13I	GGNCC	4 cut(s)	645, 738, 791, 1108
Csp6I	GTAC	2 cut(s)	426, 844
CspCI	CAANNNNNGTGG	2 cut(s)	265, 300
CviAII	CATG	7 cut(s)	59, 118, 193, 310, 325, 410, 827
CviQI	GTAC	2 cut(s)	426, 844
DdeI	CTNAG	2 cut(s)	165, 500
DinI	GGCGCC	1 cut(s)	815
DpnI	GATC	5 cut(s)	391, 690, 723, 751, 969
DpnII	GATC	5 cut(s)	389, 688, 721, 749, 967
DraI	TTTAAA	2 cut(s)	765, 1102
EaeI	YGGCCR	4 cut(s)	429, 595, 676, 959
Eam1104I	CTCTTC	1 cut(s)	1055
EarI	CTCTTC	1 cut(s)	1055
Eco32I	GATATC	1 cut(s)	40
Eco47I	GGWCC	2 cut(s)	738, 1108
Eco57I	CTGAAG	1 cut(s)	158
EcoRII	CCWGG	3 cut(s)	431, 673, 1010
EcoRV	GATATC	1 cut(s)	40
EcoT22I	ATGCAT	2 cut(s)	415, 471
EgeI	GGCGCC	1 cut(s)	815
EheI	GGCGCC	1 cut(s)	815
FaeI	CATG	7 cut(s)	62, 121, 196, 313, 328, 413, 830
FatI	CATG	7 cut(s)	58, 117, 192, 309, 324, 409, 826
FauI	CCCGC	1 cut(s)	77
FauNDI	CATATG	4 cut(s)	34, 471, 495, 949
FbaI	TGATCA	1 cut(s)	688
FblI	GTMKAC	1 cut(s)	1075
Fnu4HI	GCNGC	4 cut(s)	985, 1005, 1008, 1123
FokI	GGATG	5 cut(s)	83, 305, 400, 849, 1051
Fsp4HI	GCNGC	4 cut(s)	985, 1005, 1008, 1123
FspBI	CTAG	3 cut(s)	263, 387, 695
GlaI	GCGC	1 cut(s)	815
GluI	GCNGC	4 cut(s)	985, 1005, 1008, 1123
HaeII	RGCGCY	1 cut(s)	817
HaeIII	GGCC	6 cut(s)	431, 597, 647, 678, 793, 961
HapII	CCGG	2 cut(s)	598, 741
HhaI	GCGC	1 cut(s)	816
Hin1I	GRCGYC	1 cut(s)	814
Hin1II	CATG	7 cut(s)	62, 121, 196, 313, 328, 413, 830
Hin6I	GCGC	1 cut(s)	814
HinP1I	GCGC	1 cut(s)	814
HindIII	AAGCTT	2 cut(s)	254, 938
HinfI	GANTC	5 cut(s)	436, 578, 779, 833, 869
HpaII	CCGG	2 cut(s)	598, 741
HphI	GGTGA	1 cut(s)	1072
Hpy166II	GTNNAC	1 cut(s)	1076
Hpy188I	TCNGA	6 cut(s)	348, 394, 532, 757, 784, 874
Hpy8I	GTNNAC	1 cut(s)	1076
HpyAV	CCTTC	6 cut(s)	133, 782, 901, 925, 1049, 1111
HpyCH4III	ACNGT	2 cut(s)	451, 589
HpyCH4IV	ACGT	1 cut(s)	769
HpyCH4V	TGCA	7 cut(s)	4, 175, 181, 413, 469, 493, 878
HpyF10VI	GCNNNNNNNGC	6 cut(s)	302, 319, 419, 428, 603, 724
HpyF3I	CTNAG	2 cut(s)	165, 500
HpySE526I	ACGT	1 cut(s)	769
Hsp92I	GRCGYC	1 cut(s)	814
Hsp92II	CATG	7 cut(s)	62, 121, 196, 313, 328, 413, 830
HspAI	GCGC	1 cut(s)	814
KasI	GGCGCC	1 cut(s)	813
Kpn2I	TCCGGA	1 cut(s)	740
KroI	GCCGGC	1 cut(s)	597
KroNI	GCCGGC	1 cut(s)	599
Ksp22I	TGATCA	1 cut(s)	688
Kzo9I	GATC	5 cut(s)	389, 688, 721, 749, 967
LmnI	GCTCC	1 cut(s)	882
Lsp1109I	GCAGC	3 cut(s)	991, 994, 1134
LweI	GCATC	5 cut(s)	283, 422, 494, 641, 865
MaeI	CTAG	3 cut(s)	263, 387, 695
MaeII	ACGT	1 cut(s)	769
MaeIII	GTNAC	2 cut(s)	589, 896
MalI	GATC	5 cut(s)	391, 690, 723, 751, 969
MboI	GATC	5 cut(s)	389, 688, 721, 749, 967
MboII	GAAGA	8 cut(s)	361, 557, 627, 710, 741, 842, 1072, 1126
MfeI	CAATTG	1 cut(s)	176
MhlI	GDGCHC	1 cut(s)	324
MlsI	TGGCCA	2 cut(s)	678, 961
MluCI	AATT	5 cut(s)	107, 176, 458, 760, 822
MluNI	TGGCCA	2 cut(s)	678, 961
Mly113I	GGCGCC	1 cut(s)	814
MlyI	GAGTC	2 cut(s)	430, 788
MnlI	CCTC	7 cut(s)	67, 160, 324, 388, 717, 827, 1078
Mox20I	TGGCCA	2 cut(s)	678, 961
Mph1103I	ATGCAT	2 cut(s)	415, 471
MroI	TCCGGA	1 cut(s)	740
MroNI	GCCGGC	1 cut(s)	597
MscI	TGGCCA	2 cut(s)	678, 961
MseI	TTAA	6 cut(s)	114, 252, 300, 354, 764, 1101
MslI	CAYNNNNRTG	1 cut(s)	63
Msp20I	TGGCCA	2 cut(s)	678, 961
MspI	CCGG	2 cut(s)	598, 741
MspR9I	CCNGG	3 cut(s)	433, 675, 1012
MunI	CAATTG	1 cut(s)	176
MvaI	CCWGG	3 cut(s)	433, 675, 1012
MwoI	GCNNNNNNNGC	6 cut(s)	302, 319, 419, 428, 603, 724
NaeI	GCCGGC	1 cut(s)	599
NarI	GGCGCC	1 cut(s)	814
NdeI	CATATG	4 cut(s)	34, 471, 495, 949
NdeII	GATC	5 cut(s)	389, 688, 721, 749, 967
NgoMIV	GCCGGC	1 cut(s)	597
NlaIII	CATG	7 cut(s)	62, 121, 196, 313, 328, 413, 830
NlaIV	GGNNCC	3 cut(s)	512, 815, 1109
NmuCI	GTSAC	2 cut(s)	589, 896
NsiI	ATGCAT	2 cut(s)	415, 471
PagI	TCATGA	1 cut(s)	826
PdiI	GCCGGC	1 cut(s)	599
PfeI	GAWTC	3 cut(s)	578, 833, 869
PflFI	GACNNNGTC	1 cut(s)	1045
PkrI	GCNGC	4 cut(s)	986, 1006, 1009, 1124
PleI	GAGTC	2 cut(s)	430, 787
PluTI	GGCGCC	1 cut(s)	817
PpsI	GAGTC	2 cut(s)	430, 787
Psp6I	CCWGG	3 cut(s)	431, 673, 1010
PspGI	CCWGG	3 cut(s)	431, 673, 1010
PspN4I	GGNNCC	3 cut(s)	512, 815, 1109
PspPI	GGNCC	4 cut(s)	645, 738, 791, 1108
PstNI	CAGNNNCTG	2 cut(s)	488, 593
PsyI	GACNNNGTC	1 cut(s)	1045
RsaI	GTAC	2 cut(s)	427, 845
RsaNI	GTAC	2 cut(s)	426, 844
RseI	CAYNNNNRTG	1 cut(s)	63
SaqAI	TTAA	6 cut(s)	114, 252, 300, 354, 764, 1101
SatI	GCNGC	4 cut(s)	985, 1005, 1008, 1123
Sau3AI	GATC	5 cut(s)	389, 688, 721, 749, 967
Sau96I	GGNCC	4 cut(s)	645, 738, 791, 1108
SchI	GAGTC	2 cut(s)	430, 788
ScrFI	CCNGG	3 cut(s)	433, 675, 1012
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	8 cut(s)	102, 144, 166, 258, 403, 740, 772, 942
SfaNI	GCATC	5 cut(s)	283, 422, 494, 641, 865
SfoI	GGCGCC	1 cut(s)	815
SinI	GGWCC	2 cut(s)	738, 1108
SmiMI	CAYNNNNRTG	1 cut(s)	63
SmlI	CTYRAG	2 cut(s)	315, 1069
SmoI	CTYRAG	2 cut(s)	315, 1069
Sse9I	AATT	5 cut(s)	107, 176, 458, 760, 822
SsiI	CCGC	2 cut(s)	84, 985
SspDI	GGCGCC	1 cut(s)	813
SspMI	CTAG	3 cut(s)	263, 387, 695
StyD4I	CCNGG	3 cut(s)	431, 673, 1010
TaaI	ACNGT	2 cut(s)	451, 589
TaiI	ACGT	1 cut(s)	772
TaqI	TCGA	1 cut(s)	748
TasI	AATT	5 cut(s)	107, 176, 458, 760, 822
TauI	GCSGC	1 cut(s)	987
TfiI	GAWTC	3 cut(s)	578, 833, 869
Tru1I	TTAA	6 cut(s)	114, 252, 300, 354, 764, 1101
Tru9I	TTAA	6 cut(s)	114, 252, 300, 354, 764, 1101
TscAI	CASTG	1 cut(s)	598
TseFI	GTSAC	2 cut(s)	589, 896
TseI	GCWGC	3 cut(s)	1004, 1007, 1122
Tsp45I	GTSAC	2 cut(s)	589, 896
TspDTI	ATGAA	7 cut(s)	341, 488, 558, 627, 801, 815, 843
TspGWI	ACGGA	1 cut(s)	581
TspRI	CASTG	1 cut(s)	598
Tth111I	GACNNNGTC	1 cut(s)	1045
VpaK11BI	GGWCC	2 cut(s)	738, 1108
XapI	RAATTY	1 cut(s)	760
XbaI	TCTAGA	1 cut(s)	386
XcmI	CCANNNNNNNNNTGG	2 cut(s)	590, 954
XmiI	GTMKAC	1 cut(s)	1075
XspI	CTAG	3 cut(s)	263, 387, 695
Zsp2I	ATGCAT	2 cut(s)	415, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.