FvH4_6g18960

RRP12-like protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
12558410 .. 12559868
1459 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g18960.t1

Sequence Viewer

Length: 948 bp
ATGGAAGCCATTGAAATGGAAGAGCCGCCGCTAACCCCAACCAGCACCGCCGCCTTGGACGACTCCGACGCCGACATCTGCACCTCAATCCTCACGCTCTTCGGCAACTCCACGCGCGAGGACCACCAGCACCTTTGCGCCGTCATCGGTGGCATGGCCCAGGGCTTCAAGGACCAAAGCCTCCCTTCCTCCCCCGTCGCCTACTTCGGCGCCGCGTGCTCGTCTCTCGATCGAATCCTATCGGAGTCGAAGCCCTCCGGTCACATGATCTCACTATTCTCTCCATGGCCGTCCGGAGAGTCTCGCCGGCGATTCTCCTCTTTGACCGTCGCCGGAGCCGTCTCCGGGTTGAAATGTATAGCGCATTTGCTCATCGTCGGCAGCCGAGTCAACCACAACAACTGGTCAGACATTTCTCAGCTCTATGGCTTCTTATTGAGCTTCGCTACGGATATTCCCGCACCAAGTATATGGGTTCTGGTTGGGGTTCTGACTGTTGTGGGTCCCAGCAGTACCACGTCAGCAGAAACATCCCAAATTAACGGGGTGACTGACAGAGTTTCAATGGCCATTTTGCAGCAAAATAGTAGTACTGAAACAAGTATTGTGGATAGGTTTAGTGATCTTCCAAATGAAATCGCCCATCATATTCTTTCCTTCCTCTCCTTCAAAGACTTCACTCGGGTTGGTTGTGTTTCCAAAACATGCAATGGGCATCAGCTGTCATCTCCCTCGGTTAATTTGTGTGACTTTTCTGATGTGAACAATTTATCTTCCTGTGAAGTGCGAAAAGGCTTGTTGGCTTCCTTTGGTAGGTACTTGAATCAGCGTGGGGATAAGAAGATACGCTGCTTTCGTTTTTCTTGGTGTGTACAATTTCTGCAGGACATTTTTGAGGATGATGGAATATGCTACTGTGATGAAGGCAATTTACAGCTGAGCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

316

Amino Acids

34.23

Weight (kDa)

5.11

Isoelectric Point (pI)

44.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HEAT_RRP12_N PF25772 18 - 91 7.4e-26 RRP12-like, N-terminal HEAT repeats
HEAT_RRP12_N PF25772 105 - 151 1.6e-08 RRP12-like, N-terminal HEAT repeats
F-box PF00646 206 - 237 2.9e-07 F-box domain
F-box-like PF12937 206 - 235 5.3e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 209
AccII CGCG 3 cut(s) 115, 117, 215
AccIII TCCGGA 1 cut(s) 293
AciI CCGC 6 cut(s) 26, 29, 48, 51, 213, 459
AcoI YGGCCR 2 cut(s) 287, 567
AcyI GRCGYC 2 cut(s) 69, 210
AfaI GTAC 4 cut(s) 514, 592, 818, 873
AfiI CCNNNNNNNGG 2 cut(s) 345, 813
AgsI TTSAA 6 cut(s) 14, 169, 352, 564, 670, 823
AjiI CACGTC 1 cut(s) 519
AjnI CCWGG 1 cut(s) 159
AluBI AGCT 5 cut(s) 421, 441, 721, 937, 942
AluI AGCT 5 cut(s) 421, 441, 721, 937, 942
Alw21I GWGCWC 2 cut(s) 221, 944
Alw26I GTCTC 3 cut(s) 228, 306, 346
Ama87I CYCGRG 1 cut(s) 681
Aor13HI TCCGGA 1 cut(s) 293
AoxI GGCC 3 cut(s) 156, 287, 567
ApeKI GCWGC 3 cut(s) 381, 577, 849
AspLEI GCGC 4 cut(s) 117, 140, 212, 364
AspS9I GGNCC 4 cut(s) 121, 157, 172, 503
AsuC2I CCSGG 1 cut(s) 346
AsuHPI GGTGA 1 cut(s) 559
AvaI CYCGRG 1 cut(s) 681
AvaII GGWCC 3 cut(s) 121, 172, 503
BalI TGGCCA 1 cut(s) 569
BanI GGYRCC 1 cut(s) 209
BanII GRGCYC 1 cut(s) 944
BarI GAAGNNNNNNTAC 2 cut(s) 915, 947
Bbv12I GWGCWC 2 cut(s) 221, 944
BbvI GCAGC 3 cut(s) 393, 589, 836
BccI CCATC 2 cut(s) 651, 896
BceAI ACGGC 3 cut(s) 125, 274, 323
BciT130I CCWGG 1 cut(s) 161
BcnI CCSGG 1 cut(s) 346
BcoDI GTCTC 3 cut(s) 228, 306, 346
BfmI CTRYAG 1 cut(s) 881
BfoI RGCGCY 1 cut(s) 213
BisI GCNGC 7 cut(s) 26, 29, 51, 213, 382, 578, 850
BlpI GCTNAGC 1 cut(s) 938
BlsI GCNGC 7 cut(s) 27, 30, 52, 214, 383, 579, 851
BmcAI AGTACT 1 cut(s) 592
Bme1390I CCNGG 2 cut(s) 161, 346
Bme18I GGWCC 3 cut(s) 121, 172, 503
BmeT110I CYCGRG 1 cut(s) 681
BmgBI CACGTC 1 cut(s) 519
BmgT120I GGNCC 4 cut(s) 121, 157, 172, 503
BmiI GGNNCC 4 cut(s) 211, 337, 504, 505
BmrFI CCNGG 2 cut(s) 161, 346
BmsI GCATC 1 cut(s) 724
Bpu1102I GCTNAGC 1 cut(s) 938
BpuMI CCSGG 1 cut(s) 346
BsaHI GRCGYC 2 cut(s) 69, 210
BsaJI CCNNGG 5 cut(s) 54, 159, 160, 284, 732
BsaWI WCCGGW 2 cut(s) 257, 293
Bsc4I CCNNNNNNNGG 2 cut(s) 345, 813
Bse118I RCCGGY 1 cut(s) 306
Bse1I ACTGG 1 cut(s) 407
Bse3DI GCAATG 1 cut(s) 715
BseAI TCCGGA 1 cut(s) 293
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 5 cut(s) 54, 159, 160, 284, 732
BseGI GGATG 2 cut(s) 530, 904
BseLI CCNNNNNNNGG 2 cut(s) 345, 813
BseMI GCAATG 1 cut(s) 715
BseMII CTCAG 2 cut(s) 431, 929
BseNI ACTGG 1 cut(s) 407
BseRI GAGGAG 1 cut(s) 307
BseXI GCAGC 3 cut(s) 393, 589, 836
BseYI CCCAGC 1 cut(s) 506
BsgI GTGCAG 1 cut(s) 64
Bsh1236I CGCG 3 cut(s) 115, 117, 215
Bsh1285I CGRYCG 1 cut(s) 232
BshFI GGCC 3 cut(s) 158, 289, 569
BshNI GGYRCC 1 cut(s) 209
BsiEI CGRYCG 1 cut(s) 232
BsiHKAI GWGCWC 2 cut(s) 221, 944
BsiHKCI CYCGRG 1 cut(s) 681
BsiSI CCGG 5 cut(s) 258, 294, 307, 333, 345
BslFI GGGAC 1 cut(s) 489
BslI CCNNNNNNNGG 2 cut(s) 345, 813
BsmAI GTCTC 3 cut(s) 228, 306, 346
BsmBI CGTCTC 2 cut(s) 228, 346
BsmFI GGGAC 1 cut(s) 489
BsnI GGCC 3 cut(s) 158, 289, 569
BsoBI CYCGRG 1 cut(s) 681
Bsp1286I GDGCHC 2 cut(s) 221, 944
Bsp13I TCCGGA 1 cut(s) 293
Bsp1407I TGTACA 1 cut(s) 871
Bsp143I GATC 3 cut(s) 229, 267, 622
Bsp1720I GCTNAGC 1 cut(s) 938
Bsp19I CCATGG 1 cut(s) 284
BspACI CCGC 6 cut(s) 26, 29, 48, 51, 213, 459
BspANI GGCC 3 cut(s) 158, 289, 569
BspCNI CTCAG 2 cut(s) 430, 930
BspEI TCCGGA 1 cut(s) 293
BspFNI CGCG 3 cut(s) 115, 117, 215
BspLI GGNNCC 4 cut(s) 211, 337, 504, 505
BspMAI CTGCAG 1 cut(s) 885
BspQI GCTCTTC 2 cut(s) 15, 104
BspT107I GGYRCC 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 715
BsrFI RCCGGY 1 cut(s) 306
BsrGI TGTACA 1 cut(s) 871
BsrI ACTGG 1 cut(s) 407
BssAI RCCGGY 1 cut(s) 306
BssECI CCNNGG 5 cut(s) 54, 159, 160, 284, 732
BssMI GATC 3 cut(s) 229, 267, 622
BssNI GRCGYC 2 cut(s) 69, 210
BssT1I CCWWGG 2 cut(s) 54, 284
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 3 cut(s) 328, 496, 917
Bst6I CTCTTC 2 cut(s) 15, 104
BstACI GRCGYC 2 cut(s) 69, 210
BstAUI TGTACA 1 cut(s) 871
BstC8I GCNNGC 2 cut(s) 217, 308
BstDEI CTNAG 2 cut(s) 417, 938
BstDSI CCRYGG 1 cut(s) 284
BstENI CCTNNNNNAGG 1 cut(s) 811
BstF5I GGATG 2 cut(s) 530, 904
BstFNI CGCG 3 cut(s) 115, 117, 215
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 4 cut(s) 117, 140, 212, 364
BstKTI GATC 3 cut(s) 232, 270, 625
BstMAI GTCTC 3 cut(s) 228, 306, 346
BstMBI GATC 3 cut(s) 229, 267, 622
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 1 cut(s) 216
BstNI CCWGG 1 cut(s) 161
BstNSI RCATGY 1 cut(s) 708
BstSCI CCNGG 2 cut(s) 159, 344
BstSFI CTRYAG 1 cut(s) 881
BstUI CGCG 3 cut(s) 115, 117, 215
BstV1I GCAGC 3 cut(s) 393, 589, 836
BstXI CCANNNNNNTGG 2 cut(s) 16, 471
BsuRI GGCC 3 cut(s) 158, 289, 569
BtgI CCRYGG 1 cut(s) 284
BtrI CACGTC 1 cut(s) 519
BtsCI GGATG 2 cut(s) 530, 904
Cac8I GCNNGC 2 cut(s) 217, 308
CfoI GCGC 4 cut(s) 117, 140, 212, 364
Cfr10I RCCGGY 1 cut(s) 306
Cfr13I GGNCC 4 cut(s) 121, 157, 172, 503
CseI GACGC 1 cut(s) 77
Csp6I GTAC 4 cut(s) 513, 591, 817, 872
CspCI CAANNNNNGTGG 2 cut(s) 588, 623
CviAII CATG 4 cut(s) 154, 265, 285, 705
CviQI GTAC 4 cut(s) 513, 591, 817, 872
DdeI CTNAG 2 cut(s) 417, 938
DinI GGCGCC 1 cut(s) 211
DpnI GATC 3 cut(s) 231, 269, 624
DpnII GATC 3 cut(s) 229, 267, 622
EaeI YGGCCR 2 cut(s) 287, 567
Eam1104I CTCTTC 2 cut(s) 15, 104
EarI CTCTTC 2 cut(s) 15, 104
Ecl136II GAGCTC 1 cut(s) 942
Eco130I CCWWGG 2 cut(s) 54, 284
Eco24I GRGCYC 1 cut(s) 944
Eco47I GGWCC 3 cut(s) 121, 172, 503
Eco53kI GAGCTC 1 cut(s) 942
Eco88I CYCGRG 1 cut(s) 681
EcoICRI GAGCTC 1 cut(s) 942
EcoNI CCTNNNNNAGG 1 cut(s) 811
EcoO109I RGGNCCY 1 cut(s) 503
EcoRII CCWGG 1 cut(s) 159
EcoT14I CCWWGG 2 cut(s) 54, 284
EcoT38I GRGCYC 1 cut(s) 944
EgeI GGCGCC 1 cut(s) 211
EheI GGCGCC 1 cut(s) 211
ErhI CCWWGG 2 cut(s) 54, 284
Esp3I CGTCTC 2 cut(s) 228, 346
FaeI CATG 4 cut(s) 157, 268, 288, 708
FalI AAGNNNNNCTT 2 cut(s) 169, 201
FaqI GGGAC 1 cut(s) 489
FatI CATG 4 cut(s) 153, 264, 284, 704
FauI CCCGC 1 cut(s) 466
Fnu4HI GCNGC 7 cut(s) 26, 29, 51, 213, 382, 578, 850
FokI GGATG 2 cut(s) 517, 911
FriOI GRGCYC 1 cut(s) 944
Fsp4HI GCNGC 7 cut(s) 26, 29, 51, 213, 382, 578, 850
GlaI GCGC 4 cut(s) 116, 139, 211, 363
GluI GCNGC 7 cut(s) 26, 29, 51, 213, 382, 578, 850
GsaI CCCAGC 1 cut(s) 510
HaeII RGCGCY 1 cut(s) 213
HaeIII GGCC 3 cut(s) 158, 289, 569
HapII CCGG 5 cut(s) 258, 294, 307, 333, 345
HgaI GACGC 1 cut(s) 77
HhaI GCGC 4 cut(s) 117, 140, 212, 364
Hin1I GRCGYC 2 cut(s) 69, 210
Hin1II CATG 4 cut(s) 157, 268, 288, 708
Hin6I GCGC 4 cut(s) 115, 138, 210, 362
HinP1I GCGC 4 cut(s) 115, 138, 210, 362
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HinfI GANTC 7 cut(s) 62, 234, 245, 299, 312, 387, 823
HpaII CCGG 5 cut(s) 258, 294, 307, 333, 345
HphI GGTGA 1 cut(s) 559
Hpy166II GTNNAC 3 cut(s) 391, 763, 872
Hpy188I TCNGA 5 cut(s) 67, 244, 409, 492, 757
Hpy188III TCNNGA 3 cut(s) 227, 294, 945
Hpy8I GTNNAC 3 cut(s) 391, 763, 872
Hpy99I CGWCG 4 cut(s) 71, 200, 332, 380
HpyAV CCTTC 4 cut(s) 195, 667, 676, 917
HpyCH4III ACNGT 3 cut(s) 328, 496, 917
HpyCH4IV ACGT 1 cut(s) 518
HpyCH4V TGCA 4 cut(s) 81, 577, 708, 883
HpyF10VI GCNNNNNNNGC 1 cut(s) 216
HpyF3I CTNAG 2 cut(s) 417, 938
HpySE526I ACGT 1 cut(s) 518
Hsp92I GRCGYC 2 cut(s) 69, 210
Hsp92II CATG 4 cut(s) 157, 268, 288, 708
HspAI GCGC 4 cut(s) 115, 138, 210, 362
KasI GGCGCC 1 cut(s) 209
KflI GGGWCCC 1 cut(s) 503
Kpn2I TCCGGA 1 cut(s) 293
KroI GCCGGC 1 cut(s) 306
KroNI GCCGGC 1 cut(s) 308
Kzo9I GATC 3 cut(s) 229, 267, 622
LguI GCTCTTC 2 cut(s) 15, 104
LmnI GCTCC 2 cut(s) 335, 947
Lsp1109I GCAGC 3 cut(s) 393, 589, 836
LweI GCATC 1 cut(s) 724
MaeII ACGT 1 cut(s) 518
MaeIII GTNAC 3 cut(s) 260, 547, 746
MalI GATC 3 cut(s) 231, 269, 624
MboI GATC 3 cut(s) 229, 267, 622
MboII GAAGA 5 cut(s) 32, 91, 617, 765, 853
MhlI GDGCHC 2 cut(s) 221, 944
MlsI TGGCCA 1 cut(s) 569
MluCI AATT 5 cut(s) 537, 739, 766, 875, 928
MluNI TGGCCA 1 cut(s) 569
Mly113I GGCGCC 1 cut(s) 210
MlyI GAGTC 4 cut(s) 56, 254, 308, 396
MmeI TCCRAC 1 cut(s) 90
Mox20I TGGCCA 1 cut(s) 569
MreI CGCCGGCG 1 cut(s) 306
MroI TCCGGA 1 cut(s) 293
MroNI GCCGGC 1 cut(s) 306
MscI TGGCCA 1 cut(s) 569
MseI TTAA 2 cut(s) 540, 738
MslI CAYNNNNRTG 1 cut(s) 14
Msp20I TGGCCA 1 cut(s) 569
MspA1I CMGCKG 2 cut(s) 721, 937
MspI CCGG 5 cut(s) 258, 294, 307, 333, 345
MspR9I CCNGG 2 cut(s) 161, 346
MvaI CCWGG 1 cut(s) 161
MvnI CGCG 3 cut(s) 115, 117, 215
MwoI GCNNNNNNNGC 1 cut(s) 216
NaeI GCCGGC 1 cut(s) 308
NarI GGCGCC 1 cut(s) 210
NciI CCSGG 1 cut(s) 346
NcoI CCATGG 1 cut(s) 284
NdeII GATC 3 cut(s) 229, 267, 622
NgoMIV GCCGGC 1 cut(s) 306
NlaIII CATG 4 cut(s) 157, 268, 288, 708
NlaIV GGNNCC 4 cut(s) 211, 337, 504, 505
NmeAIII GCCGAG 1 cut(s) 410
NmuCI GTSAC 3 cut(s) 260, 547, 746
NspI RCATGY 1 cut(s) 708
PasI CCCWGGG 1 cut(s) 160
PciSI GCTCTTC 2 cut(s) 15, 104
PcsI WCGNNNNNNNCGW 2 cut(s) 336, 853
PdiI GCCGGC 1 cut(s) 308
PfeI GAWTC 3 cut(s) 234, 312, 823
PkrI GCNGC 7 cut(s) 27, 30, 52, 214, 383, 579, 851
Ple19I CGATCG 1 cut(s) 232
PleI GAGTC 4 cut(s) 56, 253, 307, 395
PluTI GGCGCC 1 cut(s) 213
PpsI GAGTC 4 cut(s) 56, 253, 307, 395
PpuMI RGGWCCY 1 cut(s) 503
Psp124BI GAGCTC 1 cut(s) 944
Psp5II RGGWCCY 1 cut(s) 503
Psp6I CCWGG 1 cut(s) 159
PspFI CCCAGC 1 cut(s) 506
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 4 cut(s) 211, 337, 504, 505
PspPI GGNCC 4 cut(s) 121, 157, 172, 503
PspPPI RGGWCCY 1 cut(s) 503
PstI CTGCAG 1 cut(s) 885
PvuI CGATCG 1 cut(s) 232
PvuII CAGCTG 2 cut(s) 721, 937
RsaI GTAC 4 cut(s) 514, 592, 818, 873
RsaNI GTAC 4 cut(s) 513, 591, 817, 872
RseI CAYNNNNRTG 1 cut(s) 14
SacI GAGCTC 1 cut(s) 944
SapI GCTCTTC 2 cut(s) 15, 104
SaqAI TTAA 2 cut(s) 540, 738
SatI GCNGC 7 cut(s) 26, 29, 51, 213, 382, 578, 850
Sau3AI GATC 3 cut(s) 229, 267, 622
Sau96I GGNCC 4 cut(s) 121, 157, 172, 503
ScaI AGTACT 1 cut(s) 592
SchI GAGTC 4 cut(s) 56, 254, 308, 396
ScrFI CCNGG 2 cut(s) 161, 346
SduI GDGCHC 2 cut(s) 221, 944
SfaNI GCATC 1 cut(s) 724
SfcI CTRYAG 1 cut(s) 881
SfoI GGCGCC 1 cut(s) 211
SgrAI CRCCGGYG 1 cut(s) 306
SinI GGWCC 3 cut(s) 121, 172, 503
SmiMI CAYNNNNRTG 1 cut(s) 14
Sse9I AATT 5 cut(s) 537, 739, 766, 875, 928
SsiI CCGC 6 cut(s) 26, 29, 48, 51, 213, 459
SspDI GGCGCC 1 cut(s) 209
SstI GAGCTC 1 cut(s) 944
StyD4I CCNGG 2 cut(s) 159, 344
StyI CCWWGG 2 cut(s) 54, 284
TaaI ACNGT 3 cut(s) 328, 496, 917
TaiI ACGT 1 cut(s) 521
TaqI TCGA 3 cut(s) 228, 232, 248
TasI AATT 5 cut(s) 537, 739, 766, 875, 928
TatI WGTACW 2 cut(s) 590, 871
TauI GCSGC 4 cut(s) 28, 31, 53, 215
TfiI GAWTC 3 cut(s) 234, 312, 823
Tru1I TTAA 2 cut(s) 540, 738
Tru9I TTAA 2 cut(s) 540, 738
TseFI GTSAC 3 cut(s) 260, 547, 746
TseI GCWGC 3 cut(s) 381, 577, 849
Tsp45I GTSAC 3 cut(s) 260, 547, 746
TspDTI ATGAA 2 cut(s) 648, 936
TspGWI ACGGA 1 cut(s) 464
VpaK11BI GGWCC 3 cut(s) 121, 172, 503
XagI CCTNNNNNAGG 1 cut(s) 811
XceI RCATGY 1 cut(s) 708
ZrmI AGTACT 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.