Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001309.1

Orthogroup ID

OG0006794

Physical Location & Seq

Genomic Coordinates Forward (+)

14082 .. 15210

Gene Structure 1129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001309.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atggcgatgcattgctcggtttctgtgttcttggcgaacttgaccttggtgccctccctgagagtcttgcccaactcgtacttcccgacccggtccctcatccttgacgacttggcatatgatttgggctcttgggaggagacgcaagtagagatccgcctgtctgaggtcgtgctagggtttttctgcaacctcccaattccgcccaacatggaagccattgaaatggaagagccgccgctaacccccaccagcaccaccgccttcgacgccgacgccgacgccgacgccgacatctgcaccccaatcctcacgcgcttcggcaactccacgcgcgaggaccatcagcacctctgcgccgtcatcggcggcacggcccagggtttcaaagaccagaacctccctccggtcacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUC173

Protein Analysis

138

Amino Acids

15.11

Weight (kDa)

4.2

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34357
fragaria_vesca	FvH4_1g09210 FvH4_6g18960
malus_domestica	MD02G1098900.v1.1 MD02G1099100.v1.1 MD15G1221900.v1.1
prunus_persica	Prupe.6G204300_v2.0.a1 Prupe.6G204300_v2.0.a1 Prupe.6G204500_v2.0.a1 Prupe.7G186700_v2.0.a1 Prupe.7G186700_v2.0.a1 Prupe.7G193800_v2.0.a1
pyrus_communis	pycom02g07730 pycom15g19640
rosa_chinensis	RchiOBHm_Chr2g0095731
rosa_laevigata	RLG00000016587 RLG00000016588
rosa_multiflora	Rmu_sc0001309.1_g000002 Rmu_sc0001309.1_g000003
rosa_roxburghii	Rroxscaffold_2G00146140
rosa_rugosa	Rorug02G0052900
rosa_samantha	Rh2AG101100 Rh2BG102800 Rh2CG105200 Rh2DG102600
rosa_wichuraiana	Rw2G007670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	49
AccII	CGCG	3 cut(s)	316, 334, 336
AciI	CCGC	6 cut(s)	157, 203, 236, 239, 261, 369
AclWI	GGATC	1 cut(s)	148
AcyI	GRCGYC	4 cut(s)	270, 276, 282, 288
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	2 cut(s)	166, 406
AgsI	TTSAA	2 cut(s)	224, 388
AjnI	CCWGG	1 cut(s)	378
AjuI	GAANNNNNNNTTGG	4 cut(s)	29, 61, 65, 97
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	1 cut(s)	148
AoxI	GGCC	1 cut(s)	375
AspLEI	GCGC	3 cut(s)	318, 336, 359
AspS9I	GGNCC	3 cut(s)	93, 340, 376
AsuC2I	CCSGG	1 cut(s)	91
AvaII	GGWCC	2 cut(s)	93, 340
BaeGI	GKGCMC	1 cut(s)	54
BanI	GGYRCC	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	131
BccI	CCATC	1 cut(s)	351
BceAI	ACGGC	2 cut(s)	344, 390
BciT130I	CCWGG	1 cut(s)	380
BcnI	CCSGG	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	1 cut(s)	176
BisI	GCNGC	3 cut(s)	236, 239, 370
BlsI	GCNGC	3 cut(s)	237, 240, 371
Bme1390I	CCNGG	2 cut(s)	91, 380
Bme18I	GGWCC	2 cut(s)	93, 340
BmgT120I	GGNCC	3 cut(s)	93, 340, 376
BmiI	GGNNCC	2 cut(s)	51, 95
BmrFI	CCNGG	2 cut(s)	91, 380
BpuMI	CCSGG	1 cut(s)	91
BsaHI	GRCGYC	4 cut(s)	270, 276, 282, 288
BsaJI	CCNNGG	3 cut(s)	45, 378, 379
BsaWI	WCCGGW	1 cut(s)	406
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 406
Bse3DI	GCAATG	1 cut(s)	10
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	3 cut(s)	45, 378, 379
BseGI	GGATG	1 cut(s)	99
BseLI	CCNNNNNNNGG	2 cut(s)	166, 406
BseMI	GCAATG	1 cut(s)	10
BseMII	CTCAG	2 cut(s)	50, 156
BseRI	GAGGAG	1 cut(s)	152
BseSI	GKGCMC	1 cut(s)	54
BsgI	GTGCAG	1 cut(s)	283
Bsh1236I	CGCG	3 cut(s)	316, 334, 336
BshFI	GGCC	1 cut(s)	377
BshNI	GGYRCC	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	91, 407
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	166, 406
BsmAI	GTCTC	1 cut(s)	134
BsmBI	CGTCTC	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	377
Bsp1286I	GDGCHC	2 cut(s)	54, 131
Bsp143I	GATC	1 cut(s)	153
BspACI	CCGC	6 cut(s)	157, 203, 236, 239, 261, 369
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	2 cut(s)	51, 157
BspFNI	CGCG	3 cut(s)	316, 334, 336
BspLI	GGNNCC	2 cut(s)	51, 95
BspPI	GGATC	1 cut(s)	148
BspQI	GCTCTTC	1 cut(s)	225
BspT107I	GGYRCC	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	10
BssECI	CCNNGG	3 cut(s)	45, 378, 379
BssMI	GATC	1 cut(s)	153
BssNI	GRCGYC	4 cut(s)	270, 276, 282, 288
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	380
Bst6I	CTCTTC	1 cut(s)	225
BstACI	GRCGYC	4 cut(s)	270, 276, 282, 288
BstDEI	CTNAG	2 cut(s)	59, 165
BstENI	CCTNNNNNAGG	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	99
BstFNI	CGCG	3 cut(s)	316, 334, 336
BstHHI	GCGC	3 cut(s)	318, 336, 359
BstKTI	GATC	1 cut(s)	156
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	1 cut(s)	380
BstSCI	CCNGG	2 cut(s)	89, 378
BstSLI	GKGCMC	1 cut(s)	54
BstUI	CGCG	3 cut(s)	316, 334, 336
BstX2I	RGATCY	1 cut(s)	153
BstXI	CCANNNNNNTGG	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	377
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	99
CfoI	GCGC	3 cut(s)	318, 336, 359
Cfr13I	GGNCC	3 cut(s)	93, 340, 376
CseI	GACGC	5 cut(s)	151, 278, 284, 290, 296
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	2 cut(s)	211, 414
CviJI	RGCY	4 cut(s)	129, 218, 235, 377
CviKI_1	RGCY	4 cut(s)	129, 218, 235, 377
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	2 cut(s)	59, 165
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
EciI	GGCGGA	2 cut(s)	146, 192
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	131
Eco47I	GGWCC	2 cut(s)	93, 340
EcoNI	CCTNNNNNAGG	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	45
EcoT22I	ATGCAT	1 cut(s)	12
EcoT38I	GRGCYC	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	134
FaeI	CATG	2 cut(s)	214, 417
FaiI	YATR	4 cut(s)	118, 120, 212, 415
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	2 cut(s)	210, 413
FauNDI	CATATG	1 cut(s)	118
Fnu4HI	GCNGC	3 cut(s)	236, 239, 370
FokI	GGATG	1 cut(s)	86
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	3 cut(s)	236, 239, 370
FspBI	CTAG	1 cut(s)	176
GlaI	GCGC	3 cut(s)	317, 335, 358
GluI	GCNGC	3 cut(s)	236, 239, 370
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	2 cut(s)	91, 407
HgaI	GACGC	5 cut(s)	151, 278, 284, 290, 296
HhaI	GCGC	3 cut(s)	318, 336, 359
Hin1I	GRCGYC	4 cut(s)	270, 276, 282, 288
Hin1II	CATG	2 cut(s)	214, 417
Hin6I	GCGC	3 cut(s)	316, 334, 357
HinP1I	GCGC	3 cut(s)	316, 334, 357
HinfI	GANTC	1 cut(s)	63
HpaII	CCGG	2 cut(s)	91, 407
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	1 cut(s)	85
Hpy99I	CGWCG	4 cut(s)	272, 278, 284, 290
HpyAV	CCTTC	1 cut(s)	274
HpyCH4V	TGCA	3 cut(s)	10, 189, 300
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	2 cut(s)	59, 165
Hsp92I	GRCGYC	4 cut(s)	270, 276, 282, 288
Hsp92II	CATG	2 cut(s)	214, 417
HspAI	GCGC	3 cut(s)	316, 334, 357
Kzo9I	GATC	1 cut(s)	153
LguI	GCTCTTC	1 cut(s)	225
LpnPI	CCDG	7 cut(s)	71, 104, 173, 265, 365, 392, 407
MaeI	CTAG	1 cut(s)	176
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	1 cut(s)	242
MflI	RGATCY	1 cut(s)	153
MhlI	GDGCHC	2 cut(s)	54, 131
MluCI	AATT	1 cut(s)	198
MlyI	GAGTC	1 cut(s)	72
Mph1103I	ATGCAT	1 cut(s)	12
MslI	CAYNNNNRTG	1 cut(s)	224
MspI	CCGG	2 cut(s)	91, 407
MspR9I	CCNGG	2 cut(s)	91, 380
MvaI	CCWGG	1 cut(s)	380
MvnI	CGCG	3 cut(s)	316, 334, 336
MwoI	GCNNNNNNNGC	1 cut(s)	269
NciI	CCSGG	1 cut(s)	91
NdeI	CATATG	1 cut(s)	118
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	2 cut(s)	214, 417
NlaIV	GGNNCC	2 cut(s)	51, 95
NmuCI	GTSAC	1 cut(s)	409
NsiI	ATGCAT	1 cut(s)	12
PasI	CCCWGGG	1 cut(s)	379
PciSI	GCTCTTC	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	4 cut(s)	83, 276, 282, 288
PflFI	GACNNNGTC	1 cut(s)	91
PkrI	GCNGC	3 cut(s)	237, 240, 371
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	2 cut(s)	51, 95
PspPI	GGNCC	3 cut(s)	93, 340, 376
PsuI	RGATCY	1 cut(s)	153
PsyI	GACNNNGTC	1 cut(s)	91
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
RseI	CAYNNNNRTG	1 cut(s)	224
SapI	GCTCTTC	1 cut(s)	225
SatI	GCNGC	3 cut(s)	236, 239, 370
Sau3AI	GATC	1 cut(s)	153
Sau96I	GGNCC	3 cut(s)	93, 340, 376
SchI	GAGTC	1 cut(s)	72
ScrFI	CCNGG	2 cut(s)	91, 380
SduI	GDGCHC	2 cut(s)	54, 131
SetI	ASST	5 cut(s)	47, 171, 195, 354, 402
SinI	GGWCC	2 cut(s)	93, 340
SmiMI	CAYNNNNRTG	1 cut(s)	224
Sse9I	AATT	1 cut(s)	198
SsiI	CCGC	6 cut(s)	157, 203, 236, 239, 261, 369
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	2 cut(s)	89, 378
StyI	CCWWGG	1 cut(s)	45
TaqI	TCGA	1 cut(s)	267
TasI	AATT	1 cut(s)	198
TauI	GCSGC	3 cut(s)	238, 241, 372
TseFI	GTSAC	1 cut(s)	409
Tsp45I	GTSAC	1 cut(s)	409
Tth111I	GACNNNGTC	1 cut(s)	91
VpaK11BI	GGWCC	2 cut(s)	93, 340
XagI	CCTNNNNNAGG	1 cut(s)	164
XspI	CTAG	1 cut(s)	176
Zsp2I	ATGCAT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.