Rroxscaffold_2G00146140

RRP12-like protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
84029230 .. 84036925
7696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00146140.1

Sequence Viewer

Length: 3705 bp
ATGGAAGCCATTGAAATGGAAGAGCCGCCGCTAACCCCCACCAGCACCACCGCCTTCGACGACGACGCCGACGCCGACATCTGCACCTCAATCCTCACTCGCTTCGGCAACTCCACGCGCGAGGACCACCAGCACCTCTGCGCCGTCATCGGCGGCATGGCCCAGGGTTTCAAAGACCAGAACCTCCCTCCGTCTCCGGTCGCCTACTTCGGCGCCGCGTGCTCGTCTCTCGATCGAATCTTATCGGAGCCGGAGCCCTCCGGTCACATGATCGACGCGCTCCTCACAATTCTCTCCATGGCCGTCCGGAAAGTCTCGCCAGCGATTCTCGTGAAGAAGAGCGACCTCGTTAACGGACTCCTGGTTCGTGCTCTCCTGTCCAGCTCTTTGACCGTCGCCGGAGCCGTCTCCGGGTTGAAATGTATAGCGCATTTGCTCATCGTCGGCAGCCGGGTCAACCACAACAACTGGTCAGACATTTCTCAGCTCTATGGCTTCTTACTGAGCTTCTCTACCGATTCCCGCCCTAAGGTGAGAAGGCAATCACATTTGCGGTTACGCGACGTACTGCAAAGTTTCCAAGGGACTTCGCTGCACTCACCGGCAAGTCAAGGCATTACTGATTTGTTCAAAAGGTTTATTCTGCTTGCTGGTGGAACAAAACCAGCTGCTAGTGAAGGGCCGAAGGGGAGTCTCGAGGTTTTATATCTTTTGGATGCTTTTAAAGAATGTCTTGCTCTTATGTCGACCAAGAATAAAAACGAGATCCTAGAGCTCTTTAAGCCTCTCTTGGGACTGCAAAACCCTGTTGTTACAAGGCGCATAACGGATGGTTTGTATAGGCTTTGTCTCGAACCATGTCCAGACGTTTCTCCTCAGATATTGCTTGATCAATTATGCTTATTATCTCTTTCTGTCTCCAACAATAAGACATCTGTGGATGACATGACATTTACGGCTCGTTTGCTCAATATTGGAATGGCAAAGGTTTATTCATTCAATAGGAAATTGTGCGTGATTAAACTCCCTACTGTATTCAGTTCACTACGAGATATATTGGGATCTGAGCATGAAGAGGCCATTCATGCAGCAGTGAACGCATTTAAGAATCTTATTCATGCTTGCATTGATGAAAGCTTGATCAAACAGGGGGTTGACCAGATTGTGAAGAATGGAAATATGGATGAACGGATGTCTGGGCCAACTGTAATTGAAAAAGTGTGTGCTATTATTGAAAGCTTGCTTGGATACAACTACACTCCTGTCTTGGACCTTGTATTTCAAGTTGTTTCAGCGATGTTTGATAGATTAGGGGTATACTCTTCTTATTTCATGAGGGGCACACTGAAGAGCTTGGCAGACATGGAAAAGCTGCCTGATGAAGATTTTCCTTTCAGGAAAGAGCTGCATGAATGCCTCGGAACGGCTCTTGTTGCTATGGGACCTGAAACTTTTATAGGCTTTCTGCCTCTTAATTTGGAGGCTGAAGACCTTAGTGAGGTGAATGTTTGGCTTTTTCCAATATTGAAGCAGTATACAATTGGTGCGCGATTGAGCTTTTTTATGGAGTCAATTTTGGGTATGGTCGAAGTGATACGGAATAAGTCTCGACAGCTTGAGTCACAAGGACGTATTTATTCATCAAGGAGTACAGACGCACTTATATACTCTTTGTGGTCACTGTTACCTTCATTTTGCAACTTCCCTTCTGATACTGCTGAGAGTTTCAATGATCTTAAGCAAGCTTTGTGCAACGCCCTTCGTGATGAACCTGAGATTCGTGGAATAATATGCTTGAGCTTGCAAATTCTTTTTCAACAAAATAAGAAAATTGTGGATGAAGTGAATGATCTGTCTGATAGCGAAGTAGGTACTGCCAAACAGAGAGCTATGGCTAATTATACCCCTCAGGTTATGACAGATAACTTGAGCGTGCTCAAATCAAGTGCGCGCGAGATCTTGACTGTTCTATCAGGTGTCTTCTTGAATTCTACAAAAGATGATGGAGGTTGTTTACAGTCCACAATTGGTGAGTTTGCGTCAATATCAGATAAAGCAGTTGTGTCAAGGTTGTTTCTAAGTAATATGCACAAGCTTTTGAGGGTCACTAAAGAGGCTAGGGCAGCTGCAAGTTCTAGTGATTCTAATTCCAAGCAGAGGGCACTACTATTTGACTTGTCAGTTTCATTTTTACCTGGCTTAAATGCTGATGAGGTTGATGTGTTGTTTAACGCAATAAAGCCTGCATTACAGGACTTTGATGGGTTTATCTCTTCGAAGCTCGAGGATTTGCTTAGACTGATGGTGGAATTGTTGCCTTCATGCCATTTTTCAGCTAGACGGCATAGACTTGACTGCTTGTACCTCCTAATAGTCCATGTTTCAAAGGCGAACAAGAAAACAAGAAACAAAGCATATGATATCCTTGTCCAGATTGGTCATGCTTGTGGGGATGAGGAGAAAGGCGGGAAGAAAGAGAACCTGTATCAATTCTTTAACATGGTAGCTGGAGGCCTGGCTGGCGAAACCCCTGTTATAATCAGTGCTGCAATGAGAGGCTTAGCTAGGTTGGCTTATGAGTTTTCTGACCTTGTGTCGTCTGCTACCAATTTGCTTCCATCAACATTTCTGCTCCTCCAGAGAAAGAACAGAGAAATAATTAAAGCTAATTTAGGCTTGCTGAAGGTATTGGTTGCCAAATCACAAGCTGAGGGGTTGCAATTGCACTTGAAAAGCATGGTTGAAGCCTTGTTGAAGTGGCAAGATGATACTAAAACTCATTTCAAAGCCAAGATTAAGCTTCTACTAGAAATGCTCGTCAAGAAATGTGGGCTGGATGCTGTTAAGGCTGTCATGCCTCAAGAGCACATGAAACTACTTACCAACATTCGGAAGATTAAGGAACGAAAAGATAAGAAACAACAGGCTTCTAGATCGGAGGAAGCTAAATCTCATGCATCCAAAGCAACTACAGCCAGGCTAAGCAGATGGAACCATTCAAAAGTATTTTCTGATTTCGGTGATGAAGAAACTGATGATAGTAATACGGATTATATGGATTCCCAAACAGTCACTGGCCGGCGTGGCAAGGCTTCACACCTCAAATCTAAAGCATCTTCATCACGGGCCAAGAGTAGAACAAATAAGAACTTGCCTGGCCACTTATTTGATCAACTAGAAGACGAGCCTCTTGACTTGCTTGATCGGCGAAGAACAAGGTCCGCACTTCGATCATCAGAGAATTTAAAACGTAAAATGGAGTCTGATGAAGGGCCGGAGATAGACCCTGATGGGCGCCTCATAATTCATGAAGAATCAAACTCGTACAACGAAAAGCCATCTCATCCTGATTCAGATGCAAGGAGCGAAGCAGGAAGTCACTTGTCTGTGAATACAAAGAAAATACAGAAGCGAAGGAAGACATCAGAATCTGGATGGGCTTCAACTGGCAATGAGTATGCCAGCAAGAAGGCTGGTGGGGATTTGAAAAAGAAGGACAAGCTTGAACCATACGCGTATTGGCCACTTGATCGCAAGATGATGAGCCGCAGACCGGAGCATAGGGCTGCTGCCAGGAAAGGGATATCAAGTGTGGTTAGGATGACAAAGAAGCTTGAAGGGAAGAGTGCCTCAAGTATACTCACCAGTAAAGACTTGAAGTTTAAAAGGGTCCGGAAGAAGGGCAGCAAGAGAAAAAGTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1234

Amino Acids

137.1

Weight (kDa)

9.03

Isoelectric Point (pI)

48.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HEAT_RRP12_N PF25772 16 - 289 5.2e-103 RRP12-like, N-terminal HEAT repeats
RRP12_HEAT PF08161 355 - 662 4.8e-75 Ribosomal RNA-processing protein 12, HEAT repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2537
AccB1I GGYRCC 2 cut(s) 212, 3294
AccI GTMKAC 4 cut(s) 746, 1317, 1535, 3637
AccII CGCG 9 cut(s) 118, 120, 218, 278, 561, 1549, 1951, 1953, 3515
AccIII TCCGGA 2 cut(s) 306, 3672
AclWI GGATC 2 cut(s) 760, 1069
AcoI YGGCCR 4 cut(s) 300, 3076, 3157, 3521
AcsI RAATTY 3 cut(s) 1806, 1987, 3241
AcuI CTGAAG 3 cut(s) 1367, 1506, 2702
AcyI GRCGYC 4 cut(s) 66, 72, 213, 3295
AfaI GTAC 5 cut(s) 567, 1651, 1873, 2363, 3326
AflII CTTAAG 1 cut(s) 1736
AflIII ACRYGT 1 cut(s) 3513
AhdI GACNNNNNGTC 1 cut(s) 2593
AjnI CCWGG 7 cut(s) 162, 360, 2194, 2514, 2975, 3154, 3572
AjuI GAANNNNNNNTTGG 2 cut(s) 1227, 1259
AloI GAACNNNNNNTCC 2 cut(s) 348, 380
Alw21I GWGCWC 5 cut(s) 224, 373, 777, 1938, 2868
Alw26I GTCTC 8 cut(s) 198, 231, 319, 412, 698, 854, 922, 1611
AlwI GGATC 2 cut(s) 760, 1069
AlwNI CAGNNNCTG 2 cut(s) 3074, 3431
Ama87I CYCGRG 2 cut(s) 695, 2282
Aor13HI TCCGGA 2 cut(s) 306, 3672
ApoI RAATTY 3 cut(s) 1806, 1987, 3241
ArsI GACNNNNNNTTYG 2 cut(s) 348, 380
Asp700I GAANNNNTTC 1 cut(s) 1386
AsuC2I CCSGG 2 cut(s) 412, 452
AsuHPI GGTGA 6 cut(s) 544, 591, 1513, 2042, 3032, 3634
AsuII TTCGAA 1 cut(s) 2276
AvaI CYCGRG 2 cut(s) 695, 2282
AvaII GGWCC 5 cut(s) 124, 1270, 1442, 3219, 3670
AxyI CCTNAGG 2 cut(s) 528, 1908
BaeGI GKGCMC 2 cut(s) 1343, 2164
BalI TGGCCA 2 cut(s) 3159, 3523
BanI GGYRCC 2 cut(s) 212, 3294
BanII GRGCYC 2 cut(s) 258, 777
BauI CACGAG 1 cut(s) 329
BbsI GAAGAC 4 cut(s) 1494, 1972, 3186, 3425
Bbv12I GWGCWC 5 cut(s) 224, 373, 777, 1938, 2868
BbvCI CCTCAGC 1 cut(s) 2709
BccI CCATC 9 cut(s) 824, 1997, 2255, 2296, 2626, 2982, 3284, 3346, 3429
BceAI ACGGC 6 cut(s) 128, 287, 389, 972, 1440, 2357
BciT130I CCWGG 7 cut(s) 164, 362, 2196, 2516, 2977, 3156, 3574
BciVI GTATCC 1 cut(s) 1241
BclI TGATCA 3 cut(s) 889, 1140, 3169
BcnI CCSGG 2 cut(s) 412, 452
BcoDI GTCTC 8 cut(s) 198, 231, 319, 412, 698, 854, 922, 1611
BfaI CTAG 9 cut(s) 672, 770, 2118, 2136, 2337, 2565, 2807, 2931, 3176
BfmI CTRYAG 1 cut(s) 2970
BfoI RGCGCY 2 cut(s) 216, 3298
BfrI CTTAAG 1 cut(s) 1736
BfuI GTATCC 1 cut(s) 1241
BglI GCCNNNNNGGC 2 cut(s) 2520, 3084
BglII AGATCT 1 cut(s) 1956
BlpI GCTNAGC 2 cut(s) 2560, 2981
Bme1390I CCNGG 9 cut(s) 164, 362, 412, 452, 2196, 2516, 2977, 3156, 3574
Bme18I GGWCC 5 cut(s) 124, 1270, 1442, 3219, 3670
BmeRI GACNNNNNGTC 1 cut(s) 2593
BmeT110I CYCGRG 2 cut(s) 695, 2282
BmiI GGNNCC 8 cut(s) 214, 249, 255, 403, 1443, 2993, 3296, 3671
BmrFI CCNGG 9 cut(s) 164, 362, 412, 452, 2196, 2516, 2977, 3156, 3574
BmsI GCATC 5 cut(s) 706, 2827, 2966, 3122, 3346
BpiI GAAGAC 4 cut(s) 1494, 1972, 3186, 3425
BpmI CTGGAG 2 cut(s) 2529, 2621
Bpu10I CCTNAGC 1 cut(s) 2709
Bpu1102I GCTNAGC 2 cut(s) 2560, 2981
Bpu14I TTCGAA 1 cut(s) 2276
BpuEI CTTGAG 5 cut(s) 1637, 1816, 1948, 2844, 3616
BpuMI CCSGG 2 cut(s) 412, 452
BsaHI GRCGYC 4 cut(s) 66, 72, 213, 3295
BsaJI CCNNGG 5 cut(s) 162, 163, 297, 580, 1417
BsaWI WCCGGW 5 cut(s) 196, 260, 306, 3553, 3672
Bse118I RCCGGY 2 cut(s) 601, 3078
Bse1I ACTGG 4 cut(s) 473, 3079, 3451, 3645
Bse21I CCTNAGG 2 cut(s) 528, 1908
Bse3DI GCAATG 2 cut(s) 2556, 3457
BseAI TCCGGA 2 cut(s) 306, 3672
BseBI CCWGG 7 cut(s) 164, 362, 2196, 2516, 2977, 3156, 3574
BseDI CCNNGG 5 cut(s) 162, 163, 297, 580, 1417
BseMI GCAATG 2 cut(s) 2556, 3457
BseMII CTCAG 8 cut(s) 494, 497, 890, 1056, 1710, 1764, 1922, 2700
BseNI ACTGG 4 cut(s) 473, 3079, 3451, 3645
BsePI GCGCGC 1 cut(s) 1949
BseRI GAGGAG 4 cut(s) 272, 864, 2471, 2624
BseSI GKGCMC 2 cut(s) 1343, 2164
BsgI GTGCAG 2 cut(s) 67, 578
Bsh1236I CGCG 9 cut(s) 118, 120, 218, 278, 561, 1549, 1951, 1953, 3515
Bsh1285I CGRYCG 2 cut(s) 201, 235
BshNI GGYRCC 2 cut(s) 212, 3294
BsiEI CGRYCG 2 cut(s) 201, 235
BsiHKAI GWGCWC 5 cut(s) 224, 373, 777, 1938, 2868
BsiHKCI CYCGRG 2 cut(s) 695, 2282
BslFI GGGAC 3 cut(s) 598, 807, 1455
BsmAI GTCTC 8 cut(s) 198, 231, 319, 412, 698, 854, 922, 1611
BsmBI CGTCTC 3 cut(s) 198, 231, 412
BsmFI GGGAC 3 cut(s) 598, 807, 1455
BsmI GAATGC 1 cut(s) 1418
BsoBI CYCGRG 2 cut(s) 695, 2282
Bsp119I TTCGAA 1 cut(s) 2276
Bsp1286I GDGCHC 8 cut(s) 224, 258, 373, 777, 1343, 1938, 2164, 2868
Bsp13I TCCGGA 2 cut(s) 306, 3672
Bsp1720I GCTNAGC 2 cut(s) 2560, 2981
Bsp19I CCATGG 1 cut(s) 297
BspCNI CTCAG 8 cut(s) 495, 496, 889, 1057, 1711, 1765, 1921, 2701
BspEI TCCGGA 2 cut(s) 306, 3672
BspFNI CGCG 9 cut(s) 118, 120, 218, 278, 561, 1549, 1951, 1953, 3515
BspHI TCATGA 2 cut(s) 1332, 3307
BspLI GGNNCC 8 cut(s) 214, 249, 255, 403, 1443, 2993, 3296, 3671
BspPI GGATC 2 cut(s) 760, 1069
BspQI GCTCTTC 3 cut(s) 15, 332, 1343
BspT104I TTCGAA 1 cut(s) 2276
BspT107I GGYRCC 2 cut(s) 212, 3294
BspTI CTTAAG 1 cut(s) 1736
BsrDI GCAATG 2 cut(s) 2556, 3457
BsrFI RCCGGY 2 cut(s) 601, 3078
BsrI ACTGG 4 cut(s) 473, 3079, 3451, 3645
BssAI RCCGGY 2 cut(s) 601, 3078
BssECI CCNNGG 5 cut(s) 162, 163, 297, 580, 1417
BssHII GCGCGC 1 cut(s) 1949
BssNAI GTATAC 3 cut(s) 1318, 1536, 3638
BssNI GRCGYC 4 cut(s) 66, 72, 213, 3295
BssSI CACGAG 1 cut(s) 329
BssT1I CCWWGG 2 cut(s) 297, 580
Bst1107I GTATAC 3 cut(s) 1318, 1536, 3638
Bst2BI CACGAG 1 cut(s) 329
Bst2UI CCWGG 7 cut(s) 164, 362, 2196, 2516, 2977, 3156, 3574
Bst4CI ACNGT 7 cut(s) 394, 1033, 1207, 1683, 1966, 2019, 3070
Bst6I CTCTTC 7 cut(s) 15, 332, 1068, 1327, 1343, 2278, 3617
BstACI GRCGYC 4 cut(s) 66, 72, 213, 3295
BstAFI CTTAAG 1 cut(s) 1736
BstBI TTCGAA 1 cut(s) 2276
BstDSI CCRYGG 1 cut(s) 297
BstENI CCTNNNNNAGG 1 cut(s) 1496
BstFNI CGCG 9 cut(s) 118, 120, 218, 278, 561, 1549, 1951, 1953, 3515
BstH2I RGCGCY 2 cut(s) 216, 3298
BstMAI GTCTC 8 cut(s) 198, 231, 319, 412, 698, 854, 922, 1611
BstMCI CGRYCG 2 cut(s) 201, 235
BstNI CCWGG 7 cut(s) 164, 362, 2196, 2516, 2977, 3156, 3574
BstSCI CCNGG 9 cut(s) 162, 360, 410, 450, 2194, 2514, 2975, 3154, 3572
BstSFI CTRYAG 1 cut(s) 2970
BstSLI GKGCMC 2 cut(s) 1343, 2164
BstUI CGCG 9 cut(s) 118, 120, 218, 278, 561, 1549, 1951, 1953, 3515
BstV2I GAAGAC 4 cut(s) 1494, 1972, 3186, 3425
BstX2I RGATCY 3 cut(s) 765, 1061, 1956
BstXI CCANNNNNNTGG 1 cut(s) 16
BstYI RGATCY 3 cut(s) 765, 1061, 1956
BstZ17I GTATAC 3 cut(s) 1318, 1536, 3638
Bsu36I CCTNAGG 2 cut(s) 528, 1908
BsuI GTATCC 1 cut(s) 1241
BtgI CCRYGG 1 cut(s) 297
BtgZI GCGATG 1 cut(s) 1310
BtsI GCAGTG 1 cut(s) 1098
BtsIMutI CAGTG 5 cut(s) 1098, 1343, 1679, 2548, 3072
CaiI CAGNNNCTG 2 cut(s) 3074, 3431
CciI TCATGA 2 cut(s) 1332, 3307
Cfr10I RCCGGY 2 cut(s) 601, 3078
CseI GACGC 5 cut(s) 74, 80, 284, 1664, 2028
Csp6I GTAC 5 cut(s) 566, 1650, 1872, 2362, 3325
CspCI CAANNNNNGTGG 2 cut(s) 2809, 2844
CviQI GTAC 5 cut(s) 566, 1650, 1872, 2362, 3325
DinI GGCGCC 2 cut(s) 214, 3296
DraI TTTAAA 3 cut(s) 724, 3246, 3664
DriI GACNNNNNGTC 1 cut(s) 2593
EaeI YGGCCR 4 cut(s) 300, 3076, 3157, 3521
Eam1104I CTCTTC 7 cut(s) 15, 332, 1068, 1327, 1343, 2278, 3617
Eam1105I GACNNNNNGTC 1 cut(s) 2593
EarI CTCTTC 7 cut(s) 15, 332, 1068, 1327, 1343, 2278, 3617
Ecl136II GAGCTC 1 cut(s) 775
Eco130I CCWWGG 2 cut(s) 297, 580
Eco147I AGGCCT 1 cut(s) 2514
Eco24I GRGCYC 2 cut(s) 258, 777
Eco32I GATATC 2 cut(s) 2422, 3585
Eco47I GGWCC 5 cut(s) 124, 1270, 1442, 3219, 3670
Eco53kI GAGCTC 1 cut(s) 775
Eco57I CTGAAG 3 cut(s) 1367, 1506, 2702
Eco81I CCTNAGG 2 cut(s) 528, 1908
Eco88I CYCGRG 2 cut(s) 695, 2282
EcoICRI GAGCTC 1 cut(s) 775
EcoNI CCTNNNNNAGG 1 cut(s) 1496
EcoO109I RGGNCCY 1 cut(s) 1442
EcoRI GAATTC 1 cut(s) 1987
EcoRII CCWGG 7 cut(s) 162, 360, 2194, 2514, 2975, 3154, 3572
EcoRV GATATC 2 cut(s) 2422, 3585
EcoT14I CCWWGG 2 cut(s) 297, 580
EcoT22I ATGCAT 1 cut(s) 2959
EcoT38I GRGCYC 2 cut(s) 258, 777
EgeI GGCGCC 2 cut(s) 214, 3296
EheI GGCGCC 2 cut(s) 214, 3296
ErhI CCWWGG 2 cut(s) 297, 580
Esp3I CGTCTC 3 cut(s) 198, 231, 412
FalI AAGNNNNNCTT 4 cut(s) 717, 749, 773, 805
FaqI GGGAC 3 cut(s) 598, 807, 1455
FauI CCCGC 2 cut(s) 530, 2459
FauNDI CATATG 1 cut(s) 2416
FbaI TGATCA 3 cut(s) 889, 1140, 3169
FblI GTMKAC 4 cut(s) 746, 1317, 1535, 3637
FriOI GRGCYC 2 cut(s) 258, 777
FspBI CTAG 9 cut(s) 672, 770, 2118, 2136, 2337, 2565, 2807, 2931, 3176
GsuI CTGGAG 2 cut(s) 2529, 2621
HaeII RGCGCY 2 cut(s) 216, 3298
HgaI GACGC 5 cut(s) 74, 80, 284, 1664, 2028
Hin1I GRCGYC 4 cut(s) 66, 72, 213, 3295
HincII GTYRAC 4 cut(s) 352, 457, 747, 1156
HindII GTYRAC 4 cut(s) 352, 457, 747, 1156
HindIII AAGCTT 7 cut(s) 1135, 1237, 1743, 2093, 2798, 3500, 3611
HpaI GTTAAC 1 cut(s) 352
HphI GGTGA 6 cut(s) 544, 591, 1513, 2042, 3032, 3634
Hpy99I CGWCG 8 cut(s) 62, 65, 68, 74, 278, 398, 446, 566
HpyCH4III ACNGT 7 cut(s) 394, 1033, 1207, 1683, 1966, 2019, 3070
HpyCH4IV ACGT 4 cut(s) 564, 867, 1630, 3250
HpySE526I ACGT 4 cut(s) 564, 867, 1630, 3250
Hsp92I GRCGYC 4 cut(s) 66, 72, 213, 3295
KasI GGCGCC 2 cut(s) 212, 3294
Kpn2I TCCGGA 2 cut(s) 306, 3672
KroI GCCGGC 1 cut(s) 3078
KroNI GCCGGC 1 cut(s) 3080
Ksp22I TGATCA 3 cut(s) 889, 1140, 3169
KspAI GTTAAC 1 cut(s) 352
LguI GCTCTTC 3 cut(s) 15, 332, 1343
LmnI GCTCC 7 cut(s) 247, 253, 285, 401, 2637, 3363, 3556
LweI GCATC 5 cut(s) 706, 2827, 2966, 3122, 3346
MaeI CTAG 9 cut(s) 672, 770, 2118, 2136, 2337, 2565, 2807, 2931, 3176
MaeII ACGT 4 cut(s) 564, 867, 1630, 3250
MaeIII GTNAC 9 cut(s) 263, 555, 811, 1620, 1677, 1683, 2104, 3070, 3377
MfeI CAATTG 3 cut(s) 1539, 2025, 2720
MflI RGATCY 3 cut(s) 765, 1061, 1956
MhlI GDGCHC 8 cut(s) 224, 258, 373, 777, 1343, 1938, 2164, 2868
MlsI TGGCCA 2 cut(s) 3159, 3523
MluI ACGCGT 1 cut(s) 3513
MluNI TGGCCA 2 cut(s) 3159, 3523
Mly113I GGCGCC 2 cut(s) 213, 3295
MlyI GAGTC 5 cut(s) 351, 700, 1577, 1628, 3269
MmeI TCCRAC 1 cut(s) 945
Mox20I TGGCCA 2 cut(s) 3159, 3523
Mph1103I ATGCAT 1 cut(s) 2959
MroI TCCGGA 2 cut(s) 306, 3672
MroNI GCCGGC 1 cut(s) 3078
MroXI GAANNNNTTC 1 cut(s) 1386
MscI TGGCCA 2 cut(s) 3159, 3523
MslI CAYNNNNRTG 2 cut(s) 14, 2445
Msp20I TGGCCA 2 cut(s) 3159, 3523
MspA1I CMGCKG 2 cut(s) 668, 2126
MspCI CTTAAG 1 cut(s) 1736
MspR9I CCNGG 9 cut(s) 164, 362, 412, 452, 2196, 2516, 2977, 3156, 3574
MunI CAATTG 3 cut(s) 1539, 2025, 2720
Mva1269I GAATGC 1 cut(s) 1418
MvaI CCWGG 7 cut(s) 164, 362, 2196, 2516, 2977, 3156, 3574
MvnI CGCG 9 cut(s) 118, 120, 218, 278, 561, 1549, 1951, 1953, 3515
NaeI GCCGGC 1 cut(s) 3080
NarI GGCGCC 2 cut(s) 213, 3295
NciI CCSGG 2 cut(s) 412, 452
NcoI CCATGG 1 cut(s) 297
NdeI CATATG 1 cut(s) 2416
NgoMIV GCCGGC 1 cut(s) 3078
NlaIV GGNNCC 8 cut(s) 214, 249, 255, 403, 1443, 2993, 3296, 3671
NmuCI GTSAC 6 cut(s) 263, 1620, 1677, 2104, 3070, 3377
NsiI ATGCAT 1 cut(s) 2959
NspV TTCGAA 1 cut(s) 2276
PaeR7I CTCGAG 2 cut(s) 695, 2282
PagI TCATGA 2 cut(s) 1332, 3307
PasI CCCWGGG 1 cut(s) 163
PauI GCGCGC 1 cut(s) 1949
PceI AGGCCT 1 cut(s) 2514
PciSI GCTCTTC 3 cut(s) 15, 332, 1343
PcsI WCGNNNNNNNCGW 3 cut(s) 66, 72, 402
PctI GAATGC 1 cut(s) 1418
PdiI GCCGGC 1 cut(s) 3080
PdmI GAANNNNTTC 1 cut(s) 1386
Ple19I CGATCG 1 cut(s) 235
PleI GAGTC 5 cut(s) 351, 699, 1576, 1627, 3268
PluTI GGCGCC 2 cut(s) 216, 3298
PpsI GAGTC 5 cut(s) 351, 699, 1576, 1627, 3268
PpuMI RGGWCCY 1 cut(s) 1442
PsiI TTATAA 1 cut(s) 2537
Psp124BI GAGCTC 1 cut(s) 777
Psp5II RGGWCCY 1 cut(s) 1442
Psp6I CCWGG 7 cut(s) 162, 360, 2194, 2514, 2975, 3154, 3572
PspGI CCWGG 7 cut(s) 162, 360, 2194, 2514, 2975, 3154, 3572
PspN4I GGNNCC 8 cut(s) 214, 249, 255, 403, 1443, 2993, 3296, 3671
PspPPI RGGWCCY 1 cut(s) 1442
PspXI VCTCGAGB 1 cut(s) 2282
PstNI CAGNNNCTG 2 cut(s) 3074, 3431
PsuI RGATCY 3 cut(s) 765, 1061, 1956
PteI GCGCGC 1 cut(s) 1949
PvuI CGATCG 1 cut(s) 235
PvuII CAGCTG 2 cut(s) 668, 2126
RsaI GTAC 5 cut(s) 567, 1651, 1873, 2363, 3326
RsaNI GTAC 5 cut(s) 566, 1650, 1872, 2362, 3325
RseI CAYNNNNRTG 2 cut(s) 14, 2445
SacI GAGCTC 1 cut(s) 777
SalI GTCGAC 1 cut(s) 745
SapI GCTCTTC 3 cut(s) 15, 332, 1343
SchI GAGTC 5 cut(s) 351, 700, 1577, 1628, 3269
ScrFI CCNGG 9 cut(s) 164, 362, 412, 452, 2196, 2516, 2977, 3156, 3574
SduI GDGCHC 8 cut(s) 224, 258, 373, 777, 1343, 1938, 2164, 2868
SfaNI GCATC 5 cut(s) 706, 2827, 2966, 3122, 3346
SfcI CTRYAG 1 cut(s) 2970
SfoI GGCGCC 2 cut(s) 214, 3296
Sfr274I CTCGAG 2 cut(s) 695, 2282
SfuI TTCGAA 1 cut(s) 2276
SinI GGWCC 5 cut(s) 124, 1270, 1442, 3219, 3670
SlaI CTCGAG 2 cut(s) 695, 2282
SmiMI CAYNNNNRTG 2 cut(s) 14, 2445
SmlI CTYRAG 8 cut(s) 695, 1616, 1736, 1795, 1927, 2282, 2859, 3631
SmoI CTYRAG 8 cut(s) 695, 1616, 1736, 1795, 1927, 2282, 2859, 3631
SseBI AGGCCT 1 cut(s) 2514
SspDI GGCGCC 2 cut(s) 212, 3294
SspI AATATT 2 cut(s) 973, 1524
SspMI CTAG 9 cut(s) 672, 770, 2118, 2136, 2337, 2565, 2807, 2931, 3176
SstI GAGCTC 1 cut(s) 777
StuI AGGCCT 1 cut(s) 2514
StyD4I CCNGG 9 cut(s) 162, 360, 410, 450, 2194, 2514, 2975, 3154, 3572
StyI CCWWGG 2 cut(s) 297, 580
TaaI ACNGT 7 cut(s) 394, 1033, 1207, 1683, 1966, 2019, 3070
TaiI ACGT 4 cut(s) 567, 870, 1633, 3253
TatI WGTACW 1 cut(s) 1649
TauI GCSGC 5 cut(s) 28, 31, 156, 218, 3549
TscAI CASTG 5 cut(s) 1098, 1350, 1686, 2548, 3079
TseFI GTSAC 6 cut(s) 263, 1620, 1677, 2104, 3070, 3377
Tsp45I GTSAC 6 cut(s) 263, 1620, 1677, 2104, 3070, 3377
TspGWI ACGGA 6 cut(s) 180, 369, 842, 1204, 1612, 3062
TspRI CASTG 5 cut(s) 1098, 1350, 1686, 2548, 3079
Vha464I CTTAAG 1 cut(s) 1736
VpaK11BI GGWCC 5 cut(s) 124, 1270, 1442, 3219, 3670
XagI CCTNNNNNAGG 1 cut(s) 1496
XapI RAATTY 3 cut(s) 1806, 1987, 3241
XbaI TCTAGA 1 cut(s) 2930
XcmI CCANNNNNNNNNTGG 2 cut(s) 3071, 3516
XhoI CTCGAG 2 cut(s) 695, 2282
XmiI GTMKAC 4 cut(s) 746, 1317, 1535, 3637
XmnI GAANNNNTTC 1 cut(s) 1386
XspI CTAG 9 cut(s) 672, 770, 2118, 2136, 2337, 2565, 2807, 2931, 3176
Zsp2I ATGCAT 1 cut(s) 2959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.