RchiOBHm_Chr2g0095731

RRP12-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
8664645 .. 8672471
7827 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47070

Sequence Viewer

Length: 3834 bp
ATGGAAGCCATTGAAATGGAAGAGCCGCCGCTAACCCCCACCAGCACCACCGCCTTCGACGACGACGCCGACGCCGACATCTGCACCTCAATCCTCACGCGCTTCGGCAACTCCACGCGCGAGGACCACCAGCACCTCTGCGCCGTCATCGGCGGCATGGCCCAGGGTTTCAAAGACCAGAACCTCCCTCCGTCTCCGGTCGCCTACTTCGGCGCGGCGTGCTCGTCTCTCGATCGAATCTTATCGGAGCCGGAGCCCTCCGGTCACATGATCGACGCGCTCCTCACAATTCTCTCCGTTGCCGTCCGGAAAGTCTCGCCAGCGATTCTCGTGAAGAAGAGCGACCTCGTTAACGGACTCCTGGTTCGTGCTCTCCTCTCCAGCTCTTTGACCGTCGCCGGAGCCGTCTCCGGGTTGAAATGTATAGCGCATTTGCTCATCGTCGGCAGCCGGGTCAACCACAACAACTGGTCAGACATTTCTCAGCCCTATGGCTTCTTACTGAGCTTCGCTACCGATTCCCGCCCTAAGGTGAAAAGGCAATCACATTTGCGGTTACATGATGTACTACAAAGTTTCCAAGGGACTTCGCTGCACTCACCGGCAAGTCAAGGCATTACTGATTTATTCAAAAGGTTTATTCTGCTTGCCGGTGGAACAAAACCAGCTGCTAGTGAAGGGCCAAAGGGGAGTCTCGAGGTTTTATATCTTTTGGATGCTTTTAAAGAATGTCTTGCTCTTATGTCAACCAAGAATAAAAACGAGATCCTCGAGCTCTTTAAACCTCTCTTGGGACTGCAAAACCCTGTTGTTACAAGGCGCATAACGGATGGTTTGTATAGGCTTTGTCTCGAACCATGTCCAGATGTTTCTCCTCAGATATTGCTTGATCAACTATGCTTATTATCTCTTTCTGTCTCCAACAATAAGACATCTGTGGATGACATGACATTTACGGCTCGTTTGCTCAATATTGGAATGACAAAGGTTTATTCACTCAACAGGCAGTTGTGCGTGATTAAACTCCCTACTGTATTCAGTGCACTACGAGATATATTGGGATCTGAGCATGAAGAGGCCATTCATGCAGCAGTGAACGCATTTAAGAGTCTTATTCATGCTTGCATTGATGAAAGCTTGATCAAACAGGGGGTTGACCAGATTGTGAAGAATGGAAATATGGATGAACGGAGGTCTGGGCCAACTGTAATTGAAAAAGTGTGTGCTATTATTGAAAGCTTGCTTGGATACAACTACACTCCTGTCTTGGACCTTGTATTTCAAGTTGTTTCAGCGATGTTTGATAGATTAGGGGTATACTCTTCTTATTTCATGAGGGGGACACTGAAGAGCTTGGCAGACATGGAAAAGCTGCCTGATGAAGATTTTCCTTTCAGGAAAGAGCTGCATGAATGCCTCGGAACGGCTCTTGTTGCTATGGGACCTGAAACTTTTATAGGCTTTCTGCCTCTTAATTTGGAGGCTGAAGACCTTAGTGAGGTGAACGTTTGGCTTTTTCCTATATTGAAGCAGTATACAATTGGTGCGCGATTGAGCTTTTTTATGGAGTCAATTTTGGGTATGGTTGAAGTGATACGGAATAAATCTCGACAGCTTGAGTCACAAGGTCGTATTTTTTCATCAAGGAGTACAGACGCACTTATATACTCTTTGTGGTCACTGTTACCTTCATTTTGCAACTTCCCTTCTGATACTGCTGAGAGTTTCAATGATCTGAAGCAAGCTTTGTGCAACGCCCTTCGTGATGAACCTGAGATTCGTGGAATAATATGCTTGAGCTTGCAAATTCTTGTTCAACAAAATAAGAATATTGTGGAAGAAGTGAATGATCTGTCTGATAGCGAAGTAGGTACTGCCAAACAGAGAGCTATGGCTAATTATACCCCTCAGGTTATGACAGATAACTTGAGCGTGCTCAAATCAAGTGCGTGTGAGATCTTGACTGTTCTATCAGGTGTCTTCTTGAATTCTACAAAAGATGATGGAGGTTGTTTGCAGTCCACAATTGGTGAGTTTGCGTCAATATCAGATAAAGCAGTTGTGTCAAGGTTGTTTCTAAGTAATATGCACAAGCTTTTGAGGGTCACTAAAGAGGCCAGGGCAGCTGCAAGTTCTAGTGATTCTAATTCCAGGCAGAGGGCACTACTATTTGACTTGTCAGTTTCATTTTTACCTGGTTTAAATGCTGATGAGGTTGATGTGTTGTTTAACGCAATAAAGCCTGCATTACAGGATGATGAAGGTTTGATACAGAAGAAGGCGTACAAAGTTCTTTCAATTATTCTTCGGGACTTTGAGGGGTTTATCTCTTCGAAGCTCGAGGATTTGCTTAGACTGATGGTGGAATTGCTGCCTTCATGCCATTTTTCAGCTAGACGGCATAGACTTGACTGCTTGTACCTCCTAATAGTCCATGTTTCAAAGAGCGAGACAGAGCAGAGGTGGCTTGACATCATAAGTTCTTTCCTAACAGAGATAATTCTTGGGCTTAAAGAGGCTAACAAGAAAACAAGAAACAAAGCATATGATATCCTTGTCCAGATTGGTCATGCTTGTGGGGATGAGGAGAAAGGCGGGAAGAAAGAGAACCTGTATCAATTCTTTAACATGGTAGCTGGAGGCCTGGCTGGCGAAACCCCTGTTATAATCAGTGCTGCAATGAGAGGCTTAGCTAGGTTGGCTTATGAGTTTTCTGACCTTGTGTCGTCTGCTACCAATTTGCTTCCATCAACATTTCTGCTCCTCCAGAGAAAGAACAGAGAAATAATTAAAGCTAATTTAGGCTTGCTGAAGGTATTGGTTGCCAAATCACAAGCTGAGGGGTTGCAATTGCACTTGAAAAGCATGGTTGAAGCCTTGTTGAAGTGGCAAGATGATACTAAAACTCATTTCAAAAGCAAGATTAAGCTTCTACTAGAAATGCTCGTCAAGAAATGTGGGCTGGATGCTGTTAAGGCTGTCATGCCTCAAGAGCACATGAAACTACTTACCAACATTCGGAAGATTAAGGAACGAAAAGATAAGAAACAACAGGGTTCTAGATCGGAGGAAGCTAAATCTCATGCATCCAAAGCAACTACAGCCAGGCTAAGCAGATGGAACCATTCAAAAGTATTTTCTGATTTCGGTGATGAAGAAACTGATGATAGTAATACGGATTATATGGATTCCCAAACAGTCACTGGCCGGTGTGGCAAAGCTTCACACTTCAAATCTAAAGCATCTTCATCACGGGCCAAGAGTAGAACAAATCAGAACTTGCCTGACCACTTATTTAATCAACTAGAAGACGAGCCTCTTGACTTACTTGATCGGCAAAGAACAAGGTCCGCACTTCGATCATCAGAGAATTTAAAACGTAAAATGGAGTCTGATGAAGGGCCAGAGATAGACCCTGATGGGCGCCTCATAATTCATGAAGAACCAAACTCGTACAACAAAAAGCCATCTCATCCTGATTCAGATGCAAGGAGCGAAGCAGGAAGTCACTTGTCTGTGAATACAAAGAAAATACAGAAGCGAAGGAAGACATCAGAATCTGGATGGGCTTCAACTGGCAATGAGTATGCCAGCAAGAAGGCTGGTGGGGATTTGAAAAAGAAGGACAAGCTTGAACCATACGCGTATTGGCCACTTGATCGCAAGATGATGAGCCGCAGACCAGAGCATAGGGCTGCTGCCAGGAAAGGGATATCAAGTGTGGTTAGGATGACAAAGAAGCTTGAAGGGAAGAGTGCCTCAAGTATACTCACCAGTAAAGGCTTGAAGTTTAAAAGGGTCCAGAAGAAGGGCAGCAAGAGAAAAAGTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1277

Amino Acids

141.82

Weight (kDa)

8.81

Isoelectric Point (pI)

48.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HEAT_RRP12_N PF25772 16 - 289 1.2e-101 RRP12-like, N-terminal HEAT repeats
RRP12_HEAT PF08161 355 - 662 7.1e-76 Ribosomal RNA-processing protein 12, HEAT repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2666
AccB1I GGYRCC 1 cut(s) 3423
AccI GTMKAC 3 cut(s) 1317, 1535, 3766
AccII CGCG 7 cut(s) 100, 118, 120, 215, 278, 1549, 3644
AccIII TCCGGA 1 cut(s) 306
AclI AACGTT 1 cut(s) 1506
AclWI GGATC 2 cut(s) 760, 1069
AcoI YGGCCR 2 cut(s) 3205, 3650
AcsI RAATTY 3 cut(s) 1806, 1987, 3370
AcuI CTGAAG 4 cut(s) 1367, 1506, 1757, 2831
AcyI GRCGYC 3 cut(s) 66, 72, 3424
AfaI GTAC 6 cut(s) 567, 1651, 1873, 2285, 2420, 3455
AfiI CCNNNNNNNGG 9 cut(s) 411, 529, 791, 1423, 1498, 2157, 3018, 3708, 3808
AflIII ACRYGT 1 cut(s) 3642
AhdI GACNNNNNGTC 1 cut(s) 2722
AjnI CCWGG 8 cut(s) 162, 360, 2117, 2150, 2194, 2643, 3104, 3701
AjuI GAANNNNNNNTTGG 2 cut(s) 1227, 1259
AloI GAACNNNNNNTCC 2 cut(s) 348, 380
Alw21I GWGCWC 6 cut(s) 224, 373, 777, 1045, 1938, 2997
Alw26I GTCTC 8 cut(s) 198, 231, 319, 412, 698, 854, 922, 2444
Alw44I GTGCAC 1 cut(s) 1041
AlwI GGATC 2 cut(s) 760, 1069
AlwNI CAGNNNCTG 2 cut(s) 3203, 3560
Ama87I CYCGRG 3 cut(s) 695, 770, 2339
Aor13HI TCCGGA 1 cut(s) 306
ApaLI GTGCAC 1 cut(s) 1041
ApoI RAATTY 3 cut(s) 1806, 1987, 3370
ArsI GACNNNNNNTTYG 2 cut(s) 348, 380
Asp700I GAANNNNTTC 1 cut(s) 1386
AspLEI GCGC 9 cut(s) 102, 120, 143, 215, 280, 430, 822, 1549, 3426
AsuC2I CCSGG 2 cut(s) 412, 452
AsuHPI GGTGA 6 cut(s) 544, 591, 1513, 2042, 3161, 3763
AsuII TTCGAA 1 cut(s) 2333
AvaI CYCGRG 3 cut(s) 695, 770, 2339
AvaII GGWCC 5 cut(s) 124, 1270, 1442, 3348, 3799
AxyI CCTNAGG 2 cut(s) 528, 1908
BaeGI GKGCMC 2 cut(s) 1045, 2164
BalI TGGCCA 1 cut(s) 3652
BanI GGYRCC 1 cut(s) 3423
BanII GRGCYC 2 cut(s) 258, 777
BarI GAAGNNNNNNTAC 4 cut(s) 2253, 2267, 2285, 2299
BauI CACGAG 1 cut(s) 329
BbsI GAAGAC 4 cut(s) 1494, 1972, 3315, 3554
Bbv12I GWGCWC 6 cut(s) 224, 373, 777, 1045, 1938, 2997
BbvCI CCTCAGC 1 cut(s) 2838
BccI CCATC 8 cut(s) 824, 1997, 2353, 2755, 3111, 3413, 3475, 3558
BceAI ACGGC 6 cut(s) 128, 287, 389, 972, 1440, 2414
BciT130I CCWGG 8 cut(s) 164, 362, 2119, 2152, 2196, 2645, 3106, 3703
BciVI GTATCC 1 cut(s) 1241
BclI TGATCA 2 cut(s) 889, 1140
BcnI CCSGG 2 cut(s) 412, 452
BcoDI GTCTC 8 cut(s) 198, 231, 319, 412, 698, 854, 922, 2444
BfaI CTAG 7 cut(s) 672, 2136, 2394, 2694, 2936, 3060, 3305
BfmI CTRYAG 1 cut(s) 3099
BfoI RGCGCY 1 cut(s) 3427
BfuI GTATCC 1 cut(s) 1241
BglI GCCNNNNNGGC 2 cut(s) 2649, 3213
BglII AGATCT 1 cut(s) 1956
BlpI GCTNAGC 2 cut(s) 2689, 3110
Bme18I GGWCC 5 cut(s) 124, 1270, 1442, 3348, 3799
BmeRI GACNNNNNGTC 1 cut(s) 2722
BmeT110I CYCGRG 3 cut(s) 695, 770, 2339
BmiI GGNNCC 7 cut(s) 249, 255, 403, 1443, 3122, 3425, 3800
BmsI GCATC 5 cut(s) 706, 2956, 3095, 3251, 3475
BpiI GAAGAC 4 cut(s) 1494, 1972, 3315, 3554
BpmI CTGGAG 3 cut(s) 364, 2658, 2750
Bpu10I CCTNAGC 1 cut(s) 2838
Bpu1102I GCTNAGC 2 cut(s) 2689, 3110
Bpu14I TTCGAA 1 cut(s) 2333
BpuEI CTTGAG 5 cut(s) 1637, 1816, 1948, 2973, 3745
BpuMI CCSGG 2 cut(s) 412, 452
BsaHI GRCGYC 3 cut(s) 66, 72, 3424
BsaJI CCNNGG 5 cut(s) 162, 163, 580, 1417, 2118
BsaWI WCCGGW 3 cut(s) 196, 260, 306
Bsc4I CCNNNNNNNGG 9 cut(s) 411, 529, 791, 1423, 1498, 2157, 3018, 3708, 3808
Bse118I RCCGGY 3 cut(s) 601, 650, 3207
Bse1I ACTGG 4 cut(s) 473, 3208, 3580, 3774
Bse21I CCTNAGG 2 cut(s) 528, 1908
Bse3DI GCAATG 2 cut(s) 2685, 3586
BseAI TCCGGA 1 cut(s) 306
BseBI CCWGG 8 cut(s) 164, 362, 2119, 2152, 2196, 2645, 3106, 3703
BseDI CCNNGG 5 cut(s) 162, 163, 580, 1417, 2118
BseLI CCNNNNNNNGG 9 cut(s) 411, 529, 791, 1423, 1498, 2157, 3018, 3708, 3808
BseMI GCAATG 2 cut(s) 2685, 3586
BseMII CTCAG 8 cut(s) 494, 497, 890, 1056, 1710, 1764, 1922, 2829
BseNI ACTGG 4 cut(s) 473, 3208, 3580, 3774
BseRI GAGGAG 5 cut(s) 272, 365, 864, 2600, 2753
BseSI GKGCMC 2 cut(s) 1045, 2164
BsgI GTGCAG 2 cut(s) 67, 578
Bsh1236I CGCG 7 cut(s) 100, 118, 120, 215, 278, 1549, 3644
Bsh1285I CGRYCG 2 cut(s) 201, 235
BshNI GGYRCC 1 cut(s) 3423
BsiEI CGRYCG 2 cut(s) 201, 235
BsiHKAI GWGCWC 6 cut(s) 224, 373, 777, 1045, 1938, 2997
BsiHKCI CYCGRG 3 cut(s) 695, 770, 2339
BslFI GGGAC 5 cut(s) 598, 807, 1354, 1455, 2324
BslI CCNNNNNNNGG 9 cut(s) 411, 529, 791, 1423, 1498, 2157, 3018, 3708, 3808
BsmAI GTCTC 8 cut(s) 198, 231, 319, 412, 698, 854, 922, 2444
BsmBI CGTCTC 3 cut(s) 198, 231, 412
BsmFI GGGAC 5 cut(s) 598, 807, 1354, 1455, 2324
BsmI GAATGC 1 cut(s) 1418
BsoBI CYCGRG 3 cut(s) 695, 770, 2339
Bsp119I TTCGAA 1 cut(s) 2333
Bsp1286I GDGCHC 8 cut(s) 224, 258, 373, 777, 1045, 1938, 2164, 2997
Bsp13I TCCGGA 1 cut(s) 306
Bsp1720I GCTNAGC 2 cut(s) 2689, 3110
BspCNI CTCAG 8 cut(s) 495, 496, 889, 1057, 1711, 1765, 1921, 2830
BspEI TCCGGA 1 cut(s) 306
BspFNI CGCG 7 cut(s) 100, 118, 120, 215, 278, 1549, 3644
BspHI TCATGA 2 cut(s) 1332, 3436
BspLI GGNNCC 7 cut(s) 249, 255, 403, 1443, 3122, 3425, 3800
BspPI GGATC 2 cut(s) 760, 1069
BspQI GCTCTTC 3 cut(s) 15, 332, 1343
BspT104I TTCGAA 1 cut(s) 2333
BspT107I GGYRCC 1 cut(s) 3423
BsrDI GCAATG 2 cut(s) 2685, 3586
BsrFI RCCGGY 3 cut(s) 601, 650, 3207
BsrI ACTGG 4 cut(s) 473, 3208, 3580, 3774
BssAI RCCGGY 3 cut(s) 601, 650, 3207
BssECI CCNNGG 5 cut(s) 162, 163, 580, 1417, 2118
BssNAI GTATAC 3 cut(s) 1318, 1536, 3767
BssNI GRCGYC 3 cut(s) 66, 72, 3424
BssSI CACGAG 1 cut(s) 329
BssT1I CCWWGG 1 cut(s) 580
Bst1107I GTATAC 3 cut(s) 1318, 1536, 3767
Bst2BI CACGAG 1 cut(s) 329
Bst2UI CCWGG 8 cut(s) 164, 362, 2119, 2152, 2196, 2645, 3106, 3703
Bst4CI ACNGT 6 cut(s) 394, 1033, 1207, 1683, 1966, 3199
Bst6I CTCTTC 7 cut(s) 15, 332, 1068, 1327, 1343, 2335, 3746
BstACI GRCGYC 3 cut(s) 66, 72, 3424
BstBI TTCGAA 1 cut(s) 2333
BstENI CCTNNNNNAGG 1 cut(s) 1496
BstFNI CGCG 7 cut(s) 100, 118, 120, 215, 278, 1549, 3644
BstH2I RGCGCY 1 cut(s) 3427
BstHHI GCGC 9 cut(s) 102, 120, 143, 215, 280, 430, 822, 1549, 3426
BstMAI GTCTC 8 cut(s) 198, 231, 319, 412, 698, 854, 922, 2444
BstMCI CGRYCG 2 cut(s) 201, 235
BstNI CCWGG 8 cut(s) 164, 362, 2119, 2152, 2196, 2645, 3106, 3703
BstSFI CTRYAG 1 cut(s) 3099
BstSLI GKGCMC 2 cut(s) 1045, 2164
BstUI CGCG 7 cut(s) 100, 118, 120, 215, 278, 1549, 3644
BstV2I GAAGAC 4 cut(s) 1494, 1972, 3315, 3554
BstX2I RGATCY 3 cut(s) 765, 1061, 1956
BstXI CCANNNNNNTGG 1 cut(s) 16
BstYI RGATCY 3 cut(s) 765, 1061, 1956
BstZ17I GTATAC 3 cut(s) 1318, 1536, 3767
Bsu36I CCTNAGG 2 cut(s) 528, 1908
BsuI GTATCC 1 cut(s) 1241
BtgZI GCGATG 1 cut(s) 1310
BtsI GCAGTG 1 cut(s) 1098
BtsIMutI CAGTG 6 cut(s) 1045, 1098, 1343, 1679, 2677, 3201
CaiI CAGNNNCTG 2 cut(s) 3203, 3560
CciI TCATGA 2 cut(s) 1332, 3436
CfoI GCGC 9 cut(s) 102, 120, 143, 215, 280, 430, 822, 1549, 3426
Cfr10I RCCGGY 3 cut(s) 601, 650, 3207
CseI GACGC 5 cut(s) 74, 80, 284, 1664, 2028
CsiI ACCWGGT 1 cut(s) 2194
Csp6I GTAC 6 cut(s) 566, 1650, 1872, 2284, 2419, 3454
CspCI CAANNNNNGTGG 2 cut(s) 2938, 2973
CviQI GTAC 6 cut(s) 566, 1650, 1872, 2284, 2419, 3454
DinI GGCGCC 1 cut(s) 3425
DraI TTTAAA 5 cut(s) 724, 781, 2202, 3375, 3793
DriI GACNNNNNGTC 1 cut(s) 2722
EaeI YGGCCR 2 cut(s) 3205, 3650
Eam1104I CTCTTC 7 cut(s) 15, 332, 1068, 1327, 1343, 2335, 3746
Eam1105I GACNNNNNGTC 1 cut(s) 2722
EarI CTCTTC 7 cut(s) 15, 332, 1068, 1327, 1343, 2335, 3746
Ecl136II GAGCTC 1 cut(s) 775
Eco130I CCWWGG 1 cut(s) 580
Eco147I AGGCCT 1 cut(s) 2643
Eco24I GRGCYC 2 cut(s) 258, 777
Eco32I GATATC 2 cut(s) 2551, 3714
Eco47I GGWCC 5 cut(s) 124, 1270, 1442, 3348, 3799
Eco53kI GAGCTC 1 cut(s) 775
Eco57I CTGAAG 4 cut(s) 1367, 1506, 1757, 2831
Eco81I CCTNAGG 2 cut(s) 528, 1908
Eco88I CYCGRG 3 cut(s) 695, 770, 2339
EcoICRI GAGCTC 1 cut(s) 775
EcoNI CCTNNNNNAGG 1 cut(s) 1496
EcoO109I RGGNCCY 1 cut(s) 1442
EcoRI GAATTC 1 cut(s) 1987
EcoRII CCWGG 8 cut(s) 162, 360, 2117, 2150, 2194, 2643, 3104, 3701
EcoRV GATATC 2 cut(s) 2551, 3714
EcoT14I CCWWGG 1 cut(s) 580
EcoT22I ATGCAT 1 cut(s) 3088
EcoT38I GRGCYC 2 cut(s) 258, 777
EgeI GGCGCC 1 cut(s) 3425
EheI GGCGCC 1 cut(s) 3425
ErhI CCWWGG 1 cut(s) 580
Esp3I CGTCTC 3 cut(s) 198, 231, 412
FalI AAGNNNNNCTT 2 cut(s) 717, 749
FaqI GGGAC 5 cut(s) 598, 807, 1354, 1455, 2324
FauI CCCGC 2 cut(s) 530, 2588
FauNDI CATATG 1 cut(s) 2545
FbaI TGATCA 2 cut(s) 889, 1140
FblI GTMKAC 3 cut(s) 1317, 1535, 3766
FriOI GRGCYC 2 cut(s) 258, 777
FspBI CTAG 7 cut(s) 672, 2136, 2394, 2694, 2936, 3060, 3305
GlaI GCGC 9 cut(s) 101, 119, 142, 214, 279, 429, 821, 1548, 3425
GsuI CTGGAG 3 cut(s) 364, 2658, 2750
HaeII RGCGCY 1 cut(s) 3427
HgaI GACGC 5 cut(s) 74, 80, 284, 1664, 2028
HhaI GCGC 9 cut(s) 102, 120, 143, 215, 280, 430, 822, 1549, 3426
Hin1I GRCGYC 3 cut(s) 66, 72, 3424
Hin6I GCGC 9 cut(s) 100, 118, 141, 213, 278, 428, 820, 1547, 3424
HinP1I GCGC 9 cut(s) 100, 118, 141, 213, 278, 428, 820, 1547, 3424
HincII GTYRAC 4 cut(s) 352, 457, 747, 1156
HindII GTYRAC 4 cut(s) 352, 457, 747, 1156
HindIII AAGCTT 8 cut(s) 1135, 1237, 1743, 2093, 2927, 3219, 3629, 3740
HpaI GTTAAC 1 cut(s) 352
HphI GGTGA 6 cut(s) 544, 591, 1513, 2042, 3161, 3763
Hpy99I CGWCG 7 cut(s) 62, 65, 68, 74, 278, 398, 446
HpyCH4III ACNGT 6 cut(s) 394, 1033, 1207, 1683, 1966, 3199
HpyCH4IV ACGT 2 cut(s) 1506, 3379
HpySE526I ACGT 2 cut(s) 1506, 3379
Hsp92I GRCGYC 3 cut(s) 66, 72, 3424
HspAI GCGC 9 cut(s) 100, 118, 141, 213, 278, 428, 820, 1547, 3424
KasI GGCGCC 1 cut(s) 3423
Kpn2I TCCGGA 1 cut(s) 306
Ksp22I TGATCA 2 cut(s) 889, 1140
KspAI GTTAAC 1 cut(s) 352
LguI GCTCTTC 3 cut(s) 15, 332, 1343
LmnI GCTCC 6 cut(s) 247, 253, 285, 401, 2766, 3492
LweI GCATC 5 cut(s) 706, 2956, 3095, 3251, 3475
MabI ACCWGGT 1 cut(s) 2194
MaeI CTAG 7 cut(s) 672, 2136, 2394, 2694, 2936, 3060, 3305
MaeII ACGT 2 cut(s) 1506, 3379
MaeIII GTNAC 9 cut(s) 263, 555, 811, 1620, 1677, 1683, 2104, 3199, 3506
MfeI CAATTG 3 cut(s) 1539, 2025, 2849
MflI RGATCY 3 cut(s) 765, 1061, 1956
MhlI GDGCHC 8 cut(s) 224, 258, 373, 777, 1045, 1938, 2164, 2997
MlsI TGGCCA 1 cut(s) 3652
MluI ACGCGT 1 cut(s) 3642
MluNI TGGCCA 1 cut(s) 3652
Mly113I GGCGCC 1 cut(s) 3424
MlyI GAGTC 6 cut(s) 351, 700, 1117, 1577, 1628, 3398
MmeI TCCRAC 1 cut(s) 945
Mox20I TGGCCA 1 cut(s) 3652
Mph1103I ATGCAT 1 cut(s) 3088
MroI TCCGGA 1 cut(s) 306
MroXI GAANNNNTTC 1 cut(s) 1386
MscI TGGCCA 1 cut(s) 3652
MslI CAYNNNNRTG 2 cut(s) 14, 2574
Msp20I TGGCCA 1 cut(s) 3652
MspA1I CMGCKG 2 cut(s) 668, 2126
MunI CAATTG 3 cut(s) 1539, 2025, 2849
Mva1269I GAATGC 1 cut(s) 1418
MvaI CCWGG 8 cut(s) 164, 362, 2119, 2152, 2196, 2645, 3106, 3703
MvnI CGCG 7 cut(s) 100, 118, 120, 215, 278, 1549, 3644
NarI GGCGCC 1 cut(s) 3424
NciI CCSGG 2 cut(s) 412, 452
NdeI CATATG 1 cut(s) 2545
NlaIV GGNNCC 7 cut(s) 249, 255, 403, 1443, 3122, 3425, 3800
NmuCI GTSAC 6 cut(s) 263, 1620, 1677, 2104, 3199, 3506
NsiI ATGCAT 1 cut(s) 3088
NspV TTCGAA 1 cut(s) 2333
PaeR7I CTCGAG 3 cut(s) 695, 770, 2339
PagI TCATGA 2 cut(s) 1332, 3436
PasI CCCWGGG 1 cut(s) 163
PceI AGGCCT 1 cut(s) 2643
PciSI GCTCTTC 3 cut(s) 15, 332, 1343
PcsI WCGNNNNNNNCGW 4 cut(s) 66, 72, 402, 768
PctI GAATGC 1 cut(s) 1418
PdmI GAANNNNTTC 1 cut(s) 1386
PfeI GAWTC 8 cut(s) 237, 325, 518, 1777, 2141, 3188, 3479, 3557
Ple19I CGATCG 1 cut(s) 235
PleI GAGTC 6 cut(s) 351, 699, 1116, 1576, 1627, 3397
PluTI GGCGCC 1 cut(s) 3427
PpsI GAGTC 6 cut(s) 351, 699, 1116, 1576, 1627, 3397
PpuMI RGGWCCY 1 cut(s) 1442
PsiI TTATAA 1 cut(s) 2666
Psp124BI GAGCTC 1 cut(s) 777
Psp1406I AACGTT 1 cut(s) 1506
Psp5II RGGWCCY 1 cut(s) 1442
Psp6I CCWGG 8 cut(s) 162, 360, 2117, 2150, 2194, 2643, 3104, 3701
PspGI CCWGG 8 cut(s) 162, 360, 2117, 2150, 2194, 2643, 3104, 3701
PspN4I GGNNCC 7 cut(s) 249, 255, 403, 1443, 3122, 3425, 3800
PspPPI RGGWCCY 1 cut(s) 1442
PspXI VCTCGAGB 2 cut(s) 770, 2339
PstNI CAGNNNCTG 2 cut(s) 3203, 3560
PsuI RGATCY 3 cut(s) 765, 1061, 1956
PvuI CGATCG 1 cut(s) 235
PvuII CAGCTG 2 cut(s) 668, 2126
RsaI GTAC 6 cut(s) 567, 1651, 1873, 2285, 2420, 3455
RsaNI GTAC 6 cut(s) 566, 1650, 1872, 2284, 2419, 3454
RseI CAYNNNNRTG 2 cut(s) 14, 2574
SacI GAGCTC 1 cut(s) 777
SapI GCTCTTC 3 cut(s) 15, 332, 1343
SchI GAGTC 6 cut(s) 351, 700, 1117, 1577, 1628, 3398
SduI GDGCHC 8 cut(s) 224, 258, 373, 777, 1045, 1938, 2164, 2997
SexAI ACCWGGT 1 cut(s) 2194
SfaNI GCATC 5 cut(s) 706, 2956, 3095, 3251, 3475
SfcI CTRYAG 1 cut(s) 3099
SfoI GGCGCC 1 cut(s) 3425
Sfr274I CTCGAG 3 cut(s) 695, 770, 2339
SfuI TTCGAA 1 cut(s) 2333
SinI GGWCC 5 cut(s) 124, 1270, 1442, 3348, 3799
SlaI CTCGAG 3 cut(s) 695, 770, 2339
SmiMI CAYNNNNRTG 2 cut(s) 14, 2574
SmlI CTYRAG 8 cut(s) 695, 770, 1616, 1795, 1927, 2339, 2988, 3760
SmoI CTYRAG 8 cut(s) 695, 770, 1616, 1795, 1927, 2339, 2988, 3760
SseBI AGGCCT 1 cut(s) 2643
SspDI GGCGCC 1 cut(s) 3423
SspI AATATT 2 cut(s) 973, 1831
SspMI CTAG 7 cut(s) 672, 2136, 2394, 2694, 2936, 3060, 3305
SstI GAGCTC 1 cut(s) 777
StuI AGGCCT 1 cut(s) 2643
StyI CCWWGG 1 cut(s) 580
TaaI ACNGT 6 cut(s) 394, 1033, 1207, 1683, 1966, 3199
TaiI ACGT 2 cut(s) 1509, 3382
TatI WGTACW 2 cut(s) 565, 1649
TauI GCSGC 5 cut(s) 28, 31, 156, 218, 3678
TfiI GAWTC 8 cut(s) 237, 325, 518, 1777, 2141, 3188, 3479, 3557
TscAI CASTG 6 cut(s) 1045, 1098, 1350, 1686, 2677, 3208
TseFI GTSAC 6 cut(s) 263, 1620, 1677, 2104, 3199, 3506
Tsp45I GTSAC 6 cut(s) 263, 1620, 1677, 2104, 3199, 3506
TspGWI ACGGA 7 cut(s) 180, 286, 369, 842, 1204, 1612, 3191
TspRI CASTG 6 cut(s) 1045, 1098, 1350, 1686, 2677, 3208
VneI GTGCAC 1 cut(s) 1041
VpaK11BI GGWCC 5 cut(s) 124, 1270, 1442, 3348, 3799
XagI CCTNNNNNAGG 1 cut(s) 1496
XapI RAATTY 3 cut(s) 1806, 1987, 3370
XbaI TCTAGA 1 cut(s) 3059
XcmI CCANNNNNNNNNTGG 2 cut(s) 3200, 3645
XhoI CTCGAG 3 cut(s) 695, 770, 2339
XmiI GTMKAC 3 cut(s) 1317, 1535, 3766
XmnI GAANNNNTTC 1 cut(s) 1386
XspI CTAG 7 cut(s) 672, 2136, 2394, 2694, 2936, 3060, 3305
Zsp2I ATGCAT 1 cut(s) 3088
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.