AT2G34520

Ribosomal protein S14

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006836
Physical Location & Seq
Reverse (-)
14547708 .. 14548784
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G34520.1

Sequence Viewer

Length: 495 bp
ATGGCGAGTCTCCGAAGAGTCCTGCTCAACGTAACTTCCTATTGCCAACGTTCTCTCACTCAATCGTCGTATTCTACGTCGGGGATGTTATCCCGATCGGTGGTCAAGCATGCGAACAATCTCGGTCAAATTCAAGCTAGACATTTCACGACAACGCTTATGAAATCGGGACCAAAGCATAGTGGTACAGAGCAAGGCGTGAAGCGAAACAGTGCAGATCACAGACGTAGATTGCTCGCGGCTAGATTTGAACTGAGAAGAAAGCTATACAAAGCGTTTTGCAAAGATCCAGATCTTCCCAGCGAAATGCGAGACAAGAATCGTTATAAGCTCTCGAAATTGCCGAGAAACAGTGCCTTTGCGAGAATCAGGAACAGATGTGTGTTCACTGGTCGATCTCGTTCTGTGACTGAGCTGTTCCGTGTTTCTCGAATCGTTTTCCGTGGATTAGCATCTAAAGGTGCTTTGATGGGGATAACGAAATCGTCTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S14

Protein Analysis

164

Amino Acids

18.74

Weight (kDa)

11.67

Isoelectric Point (pI)

48.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S14 PF00253 110 - 163 4.2e-20 Ribosomal protein S14p/S29e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 327
AccII CGCG 1 cut(s) 239
AciI CCGC 1 cut(s) 239
AclI AACGTT 1 cut(s) 49
AclWI GGATC 1 cut(s) 281
AcsI RAATTY 1 cut(s) 129
AfaI GTAC 1 cut(s) 187
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 2 cut(s) 134, 251
AluBI AGCT 4 cut(s) 137, 265, 331, 415
AluI AGCT 4 cut(s) 137, 265, 331, 415
Alw26I GTCTC 2 cut(s) 14, 306
AlwI GGATC 1 cut(s) 281
ApoI RAATTY 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 170
AvaII GGWCC 1 cut(s) 170
BccI CCATC 1 cut(s) 463
BcoDI GTCTC 2 cut(s) 14, 306
BfaI CTAG 2 cut(s) 138, 243
BglII AGATCT 1 cut(s) 292
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 171
BmsI GCATC 1 cut(s) 461
BplI GAGNNNNNCTC 2 cut(s) 9, 41
BsaBI GATNNNNATC 2 cut(s) 291, 451
BsaJI CCNNGG 1 cut(s) 442
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 394
Bse8I GATNNNNATC 2 cut(s) 291, 451
BseDI CCNNGG 1 cut(s) 442
BseGI GGATG 1 cut(s) 90
BseJI GATNNNNATC 2 cut(s) 291, 451
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMII CTCAG 2 cut(s) 245, 402
BseNI ACTGG 1 cut(s) 394
BseYI CCCAGC 1 cut(s) 299
BsgI GTGCAG 1 cut(s) 234
Bsh1236I CGCG 1 cut(s) 239
Bsh1285I CGRYCG 1 cut(s) 98
BsiEI CGRYCG 1 cut(s) 98
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 100
BsmAI GTCTC 2 cut(s) 14, 306
BsmFI GGGAC 1 cut(s) 183
Bsp143I GATC 5 cut(s) 95, 217, 286, 292, 395
BspACI CCGC 1 cut(s) 239
BspCNI CTCAG 2 cut(s) 246, 403
BspFNI CGCG 1 cut(s) 239
BspLI GGNNCC 1 cut(s) 171
BspPI GGATC 1 cut(s) 281
BsrI ACTGG 1 cut(s) 394
BssECI CCNNGG 1 cut(s) 442
BssMI GATC 5 cut(s) 95, 217, 286, 292, 395
Bst4CI ACNGT 2 cut(s) 212, 353
Bst6I CTCTTC 1 cut(s) 10
BstC8I GCNNGC 2 cut(s) 111, 237
BstDEI CTNAG 2 cut(s) 254, 411
BstDSI CCRYGG 1 cut(s) 442
BstF5I GGATG 1 cut(s) 90
BstFNI CGCG 1 cut(s) 239
BstKTI GATC 5 cut(s) 98, 220, 289, 295, 398
BstMAI GTCTC 2 cut(s) 14, 306
BstMBI GATC 5 cut(s) 95, 217, 286, 292, 395
BstMCI CGRYCG 1 cut(s) 98
BstNSI RCATGY 1 cut(s) 113
BstUI CGCG 1 cut(s) 239
BstX2I RGATCY 2 cut(s) 286, 292
BstYI RGATCY 2 cut(s) 286, 292
BtgI CCRYGG 1 cut(s) 442
BtsCI GGATG 1 cut(s) 90
BtsIMutI CAGTG 3 cut(s) 217, 358, 387
Cac8I GCNNGC 2 cut(s) 111, 237
Cfr13I GGNCC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 186
CviAII CATG 1 cut(s) 110
CviJI RGCY 5 cut(s) 137, 242, 265, 331, 415
CviKI_1 RGCY 5 cut(s) 137, 242, 265, 331, 415
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 2 cut(s) 254, 411
DpnI GATC 5 cut(s) 97, 219, 288, 294, 397
DpnII GATC 5 cut(s) 95, 217, 286, 292, 395
Eam1104I CTCTTC 1 cut(s) 10
EarI CTCTTC 1 cut(s) 10
Eco47I GGWCC 1 cut(s) 170
FaeI CATG 1 cut(s) 113
FaiI YATR 5 cut(s) 111, 161, 180, 268, 327
FaqI GGGAC 1 cut(s) 183
FatI CATG 1 cut(s) 109
Fnu4HI GCNGC 1 cut(s) 240
FokI GGATG 1 cut(s) 97
Fsp4HI GCNGC 1 cut(s) 240
FspBI CTAG 2 cut(s) 138, 243
GluI GCNGC 1 cut(s) 240
GsaI CCCAGC 1 cut(s) 303
Hin1II CATG 1 cut(s) 113
HinfI GANTC 5 cut(s) 7, 18, 319, 366, 432
Hpy166II GTNNAC 1 cut(s) 387
Hpy188I TCNGA 1 cut(s) 14
Hpy188III TCNNGA 7 cut(s) 93, 148, 168, 290, 334, 370, 429
Hpy8I GTNNAC 1 cut(s) 387
Hpy99I CGWCG 2 cut(s) 70, 82
HpyCH4III ACNGT 2 cut(s) 212, 353
HpyCH4IV ACGT 4 cut(s) 30, 49, 77, 226
HpyCH4V TGCA 2 cut(s) 215, 282
HpyF3I CTNAG 2 cut(s) 254, 411
HpySE526I ACGT 4 cut(s) 30, 49, 77, 226
Hsp92II CATG 1 cut(s) 113
Kzo9I GATC 5 cut(s) 95, 217, 286, 292, 395
LpnPI CCDG 5 cut(s) 35, 303, 313, 355, 375
LweI GCATC 1 cut(s) 461
MaeI CTAG 2 cut(s) 138, 243
MaeII ACGT 4 cut(s) 30, 49, 77, 226
MaeIII GTNAC 2 cut(s) 31, 406
MalI GATC 5 cut(s) 97, 219, 288, 294, 397
MboI GATC 5 cut(s) 95, 217, 286, 292, 395
MboII GAAGA 3 cut(s) 27, 270, 287
MflI RGATCY 2 cut(s) 286, 292
MluCI AATT 2 cut(s) 129, 338
MlyI GAGTC 2 cut(s) 16, 27
MvnI CGCG 1 cut(s) 239
NdeII GATC 5 cut(s) 95, 217, 286, 292, 395
NlaIII CATG 1 cut(s) 113
NlaIV GGNNCC 1 cut(s) 171
NmeAIII GCCGAG 1 cut(s) 369
NmuCI GTSAC 1 cut(s) 406
NspI RCATGY 1 cut(s) 113
PaeI GCATGC 1 cut(s) 113
PcsI WCGNNNNNNNCGW 2 cut(s) 74, 341
PfeI GAWTC 3 cut(s) 319, 366, 432
PkrI GCNGC 1 cut(s) 241
Ple19I CGATCG 1 cut(s) 98
PleI GAGTC 2 cut(s) 15, 26
PpsI GAGTC 2 cut(s) 15, 26
PsiI TTATAA 1 cut(s) 327
Psp1406I AACGTT 1 cut(s) 49
PspFI CCCAGC 1 cut(s) 299
PspN4I GGNNCC 1 cut(s) 171
PspPI GGNCC 1 cut(s) 170
PsuI RGATCY 2 cut(s) 286, 292
PvuI CGATCG 1 cut(s) 98
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 5 cut(s) 95, 217, 286, 292, 395
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 2 cut(s) 16, 27
SetI ASST 9 cut(s) 33, 52, 80, 139, 229, 267, 333, 417, 463
SfaNI GCATC 1 cut(s) 461
SinI GGWCC 1 cut(s) 170
SphI GCATGC 1 cut(s) 113
Sse9I AATT 2 cut(s) 129, 338
SsiI CCGC 1 cut(s) 239
SspMI CTAG 2 cut(s) 138, 243
TaaI ACNGT 2 cut(s) 212, 353
TaiI ACGT 4 cut(s) 33, 52, 80, 229
TaqI TCGA 3 cut(s) 335, 394, 430
TaqII GACCGA 1 cut(s) 113
TasI AATT 2 cut(s) 129, 338
TauI GCSGC 1 cut(s) 242
TfiI GAWTC 3 cut(s) 319, 366, 432
TscAI CASTG 3 cut(s) 217, 358, 394
TseFI GTSAC 1 cut(s) 406
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 1 cut(s) 176
TspGWI ACGGA 2 cut(s) 410, 431
TspRI CASTG 3 cut(s) 217, 358, 394
VpaK11BI GGWCC 1 cut(s) 170
XapI RAATTY 1 cut(s) 129
XceI RCATGY 1 cut(s) 113
XspI CTAG 2 cut(s) 138, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.