Rorug05G0300100

Ribosomal protein S14

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0006836
Physical Location & Seq
Forward (+)
34880677 .. 34881239
563 bp
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UTR
Exon/CDS
Intron
Rorug05G0300100.1

Sequence Viewer

Length: 309 bp
ATGTATGGATGTCAGCAAAGGTACAGATCCAATTGTTCTCTCTCGCCTTTTAATTTGAAGTTGATTCAAGGGTTCACATTTACAGAAGTAAACTCTGTCAAAGTTACTAGTTGTCACTTCTTATTGGATGGAAAACTTCTTACTAGTGGTGGCCATGATAAAGAGGCTATATTATGGTACACTGATACTCTGAAGCCAAAATCTACACTTGAAGAACATTCAGCTTTGATAACTGATGTTCGGTTCAGTCCGAGCATGCCACGTCTTGCAACATCTTCAATCAACAAAACTGTCAGTCTGGGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S14

Protein Analysis

102

Amino Acids

11.36

Weight (kDa)

8.76

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 30 - 89 3.2e-06 CDC20/Fizzy WD40 domain
WD40_Prp19 PF24814 32 - 99 3.1e-07 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 33 - 99 2.5e-09 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 33 - 99 6.1e-09 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 33 - 98 7.4e-08 WDR3 first beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 21
AcoI YGGCCR 1 cut(s) 151
AcuI CTGAAG 1 cut(s) 212
AfaI GTAC 2 cut(s) 23, 179
AgsI TTSAA 4 cut(s) 58, 68, 212, 279
AhlI ACTAGT 2 cut(s) 107, 143
AjiI CACGTC 1 cut(s) 263
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
AlwI GGATC 1 cut(s) 21
AoxI GGCC 1 cut(s) 151
BalI TGGCCA 1 cut(s) 153
BccI CCATC 1 cut(s) 122
BcuI ACTAGT 2 cut(s) 107, 143
BfaI CTAG 2 cut(s) 108, 144
BmgBI CACGTC 1 cut(s) 263
BseGI GGATG 3 cut(s) 14, 133, 308
BshFI GGCC 1 cut(s) 153
BsnI GGCC 1 cut(s) 153
Bsp143I GATC 1 cut(s) 26
BspANI GGCC 1 cut(s) 153
BspPI GGATC 1 cut(s) 21
BssMI GATC 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 292
BstC8I GCNNGC 1 cut(s) 257
BstF5I GGATG 3 cut(s) 14, 133, 308
BstKTI GATC 1 cut(s) 29
BstMBI GATC 1 cut(s) 26
BstNSI RCATGY 1 cut(s) 259
BstX2I RGATCY 1 cut(s) 26
BstYI RGATCY 1 cut(s) 26
BsuRI GGCC 1 cut(s) 153
BtrI CACGTC 1 cut(s) 263
BtsCI GGATG 3 cut(s) 14, 133, 308
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 257
Csp6I GTAC 2 cut(s) 22, 178
CviAII CATG 2 cut(s) 155, 256
CviJI RGCY 4 cut(s) 153, 167, 196, 224
CviKI_1 RGCY 4 cut(s) 153, 167, 196, 224
CviQI GTAC 2 cut(s) 22, 178
DpnI GATC 1 cut(s) 28
DpnII GATC 1 cut(s) 26
EaeI YGGCCR 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 212
FaeI CATG 2 cut(s) 158, 259
FaiI YATR 5 cut(s) 6, 156, 170, 175, 257
FatI CATG 2 cut(s) 154, 255
FokI GGATG 2 cut(s) 21, 140
FspBI CTAG 2 cut(s) 108, 144
HaeIII GGCC 1 cut(s) 153
Hin1II CATG 2 cut(s) 158, 259
HinfI GANTC 1 cut(s) 64
Hpy166II GTNNAC 3 cut(s) 75, 91, 180
Hpy188I TCNGA 2 cut(s) 192, 252
Hpy8I GTNNAC 3 cut(s) 75, 91, 180
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4IV ACGT 1 cut(s) 262
HpyCH4V TGCA 1 cut(s) 269
HpySE526I ACGT 1 cut(s) 262
Hsp92II CATG 2 cut(s) 158, 259
Kzo9I GATC 1 cut(s) 26
LpnPI CCDG 1 cut(s) 284
MaeI CTAG 2 cut(s) 108, 144
MaeII ACGT 1 cut(s) 262
MaeIII GTNAC 2 cut(s) 103, 113
MalI GATC 1 cut(s) 28
MboI GATC 1 cut(s) 26
MboII GAAGA 2 cut(s) 224, 267
MfeI CAATTG 1 cut(s) 31
MflI RGATCY 1 cut(s) 26
MlsI TGGCCA 1 cut(s) 153
MluCI AATT 2 cut(s) 31, 52
MluNI TGGCCA 1 cut(s) 153
MnlI CCTC 1 cut(s) 157
Mox20I TGGCCA 1 cut(s) 153
MscI TGGCCA 1 cut(s) 153
MseI TTAA 1 cut(s) 51
Msp20I TGGCCA 1 cut(s) 153
MunI CAATTG 1 cut(s) 31
NdeII GATC 1 cut(s) 26
NlaIII CATG 2 cut(s) 158, 259
NmuCI GTSAC 1 cut(s) 113
NspI RCATGY 1 cut(s) 259
PaeI GCATGC 1 cut(s) 259
PfeI GAWTC 1 cut(s) 64
PsuI RGATCY 1 cut(s) 26
RsaI GTAC 2 cut(s) 23, 179
RsaNI GTAC 2 cut(s) 22, 178
SaqAI TTAA 1 cut(s) 51
Sau3AI GATC 1 cut(s) 26
SetI ASST 3 cut(s) 23, 226, 265
SpeI ACTAGT 2 cut(s) 107, 143
SphI GCATGC 1 cut(s) 259
Sse9I AATT 2 cut(s) 31, 52
SspMI CTAG 2 cut(s) 108, 144
TaaI ACNGT 1 cut(s) 292
TaiI ACGT 1 cut(s) 265
TasI AATT 2 cut(s) 31, 52
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 113
TspRI CASTG 1 cut(s) 187
XceI RCATGY 1 cut(s) 259
XspI CTAG 2 cut(s) 108, 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.