Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0006836

Physical Location & Seq

Genomic Coordinates Forward (+)

12749518 .. 12752391

Gene Structure 2874 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G094900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCAGTTTCTGAGGAAAATGCGAATATCCGAGACCACCATCGGCGGTTGCTGGCGGCGAAATACGAGCTGAGACGAAATCTGTACAAAGCCCTCTGCAAGGACCCGAGCCTTCCCAGCGATCTGCGCGAGGAGAACCGCTTCAAGCTCTCCAAGCTGCCCAGAAACAGCTCCTTCACGCGCGTCAGGAACCGCTGCATCTTCTCCGGTCGCGCACGCGCCGTCTACGAGACCTTCCGTATGTCCCGTATTGTCTTCCGTACTCTGGCATCTAAAGGCATGCTCAATGGCATCAAGAAAGCATCTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S14

Protein Analysis

104

Amino Acids

12.13

Weight (kDa)

11.11

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34520
fragaria_vesca	FvH4_3g30490 FvH4_7g06080
malus_domestica	MD03G1252400.v1.1 MD07G1069700.v1.1 MD07G1070600.v1.1
prunus_persica	Prupe.2G087000_v2.0.a1 Prupe.2G087700_v2.0.a1 Prupe.2G087700_v2.0.a1 Prupe.8G094900_v2.0.a1 Prupe.8G094900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0333591 RchiOBHm_Chr5g0056441
rosa_laevigata	RLG00000029548
rosa_multiflora	Rmu_sc0000317.1_g000046 Rmu_sc0028037.1_g000005
rosa_roxburghii	Rroxscaffold_1G00023870 Rroxscaffold_4G00317390
rosa_rugosa	Rorug05G0300100
rosa_samantha	Rh1AG133200 Rh1CG127400 Rh5BG381900 Rh5CG404700
rosa_wichuraiana	Rw1G010990 Rw1G011090 Rw5G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	225
AccII	CGCG	5 cut(s)	129, 181, 183, 213, 219
AciI	CCGC	4 cut(s)	46, 56, 139, 193
AfaI	GTAC	2 cut(s)	86, 262
AfiI	CCNNNNNNNGG	2 cut(s)	100, 265
AgsI	TTSAA	1 cut(s)	145
AluBI	AGCT	4 cut(s)	70, 148, 157, 171
AluI	AGCT	4 cut(s)	70, 148, 157, 171
Alw26I	GTCTC	3 cut(s)	27, 67, 224
AlwNI	CAGNNNCTG	1 cut(s)	11
Ama87I	CYCGRG	1 cut(s)	106
ApeKI	GCWGC	2 cut(s)	157, 195
Asp700I	GAANNNNTTC	1 cut(s)	140
AspLEI	GCGC	4 cut(s)	129, 183, 215, 221
AspS9I	GGNCC	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	247
BbvI	GCAGC	2 cut(s)	144, 182
BccI	CCATC	1 cut(s)	48
BceAI	ACGGC	1 cut(s)	206
BcoDI	GTCTC	3 cut(s)	27, 67, 224
BisI	GCNGC	3 cut(s)	57, 158, 196
BlsI	GCNGC	3 cut(s)	58, 159, 197
Bme18I	GGWCC	1 cut(s)	103
BmeT110I	CYCGRG	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	2 cut(s)	105, 191
BmsI	GCATC	3 cut(s)	207, 278, 300
BpiI	GAAGAC	1 cut(s)	247
BsaI	GGTCTC	2 cut(s)	27, 224
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 265
BseLI	CCNNNNNNNGG	2 cut(s)	100, 265
BseMII	CTCAG	1 cut(s)	62
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	2 cut(s)	144, 182
BseYI	CCCAGC	1 cut(s)	116
Bsh1236I	CGCG	5 cut(s)	129, 181, 183, 213, 219
Bsh1285I	CGRYCG	1 cut(s)	211
BsiEI	CGRYCG	1 cut(s)	211
BsiHKCI	CYCGRG	1 cut(s)	106
BsiSI	CCGG	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	2 cut(s)	100, 265
BsmAI	GTCTC	3 cut(s)	27, 67, 224
BsmBI	CGTCTC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	229
Bso31I	GGTCTC	2 cut(s)	27, 224
BsoBI	CYCGRG	1 cut(s)	106
Bsp1407I	TGTACA	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	121
BspACI	CCGC	4 cut(s)	46, 56, 139, 193
BspCNI	CTCAG	2 cut(s)	4, 63
BspFNI	CGCG	5 cut(s)	129, 181, 183, 213, 219
BspLI	GGNNCC	2 cut(s)	105, 191
BspTNI	GGTCTC	2 cut(s)	27, 224
BsrGI	TGTACA	1 cut(s)	84
BssMI	GATC	1 cut(s)	121
BstAUI	TGTACA	1 cut(s)	84
BstC8I	GCNNGC	3 cut(s)	54, 217, 281
BstDEI	CTNAG	2 cut(s)	12, 71
BstENI	CCTNNNNNAGG	1 cut(s)	98
BstFNI	CGCG	5 cut(s)	129, 181, 183, 213, 219
BstHHI	GCGC	4 cut(s)	129, 183, 215, 221
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	3 cut(s)	27, 67, 224
BstMBI	GATC	1 cut(s)	121
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 126, 154
BstNSI	RCATGY	1 cut(s)	283
BstUI	CGCG	5 cut(s)	129, 181, 183, 213, 219
BstV1I	GCAGC	2 cut(s)	144, 182
BstV2I	GAAGAC	1 cut(s)	247
Cac8I	GCNNGC	3 cut(s)	54, 217, 281
CaiI	CAGNNNCTG	1 cut(s)	11
CfoI	GCGC	4 cut(s)	129, 183, 215, 221
Cfr13I	GGNCC	1 cut(s)	103
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	85, 261
CviAII	CATG	1 cut(s)	280
CviJI	RGCY	6 cut(s)	70, 92, 111, 148, 157, 171
CviKI_1	RGCY	6 cut(s)	70, 92, 111, 148, 157, 171
CviQI	GTAC	2 cut(s)	85, 261
DdeI	CTNAG	2 cut(s)	12, 71
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eco31I	GGTCTC	2 cut(s)	27, 224
Eco47I	GGWCC	1 cut(s)	103
Eco88I	CYCGRG	1 cut(s)	106
EcoNI	CCTNNNNNAGG	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	103
Esp3I	CGTCTC	1 cut(s)	67
FaeI	CATG	1 cut(s)	283
FaiI	YATR	2 cut(s)	242, 281
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	1 cut(s)	279
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	3 cut(s)	57, 158, 196
Fsp4HI	GCNGC	3 cut(s)	57, 158, 196
GlaI	GCGC	4 cut(s)	128, 182, 214, 220
GluI	GCNGC	3 cut(s)	57, 158, 196
GsaI	CCCAGC	1 cut(s)	120
HapII	CCGG	1 cut(s)	207
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	4 cut(s)	129, 183, 215, 221
Hin1II	CATG	1 cut(s)	283
Hin6I	GCGC	4 cut(s)	127, 181, 213, 219
HinP1I	GCGC	4 cut(s)	127, 181, 213, 219
HpaII	CCGG	1 cut(s)	207
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	2 cut(s)	13, 32
Hpy188III	TCNNGA	2 cut(s)	187, 295
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	3 cut(s)	122, 184, 244
HpyCH4V	TGCA	2 cut(s)	99, 198
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 126, 154
HpyF3I	CTNAG	2 cut(s)	12, 71
Hsp92II	CATG	1 cut(s)	283
HspAI	GCGC	4 cut(s)	127, 181, 213, 219
Kzo9I	GATC	1 cut(s)	121
LmnI	GCTCC	1 cut(s)	176
LpnPI	CCDG	6 cut(s)	38, 130, 172, 175, 220, 251
Lsp1109I	GCAGC	2 cut(s)	144, 182
LweI	GCATC	3 cut(s)	207, 278, 300
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	2 cut(s)	193, 247
MnlI	CCTC	3 cut(s)	7, 104, 124
MroXI	GAANNNNTTC	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	1 cut(s)	207
MvnI	CGCG	5 cut(s)	129, 181, 183, 213, 219
MwoI	GCNNNNNNNGC	3 cut(s)	117, 126, 154
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	1 cut(s)	283
NlaIV	GGNNCC	2 cut(s)	105, 191
NspI	RCATGY	1 cut(s)	283
PaeI	GCATGC	1 cut(s)	283
PdmI	GAANNNNTTC	1 cut(s)	140
PkrI	GCNGC	3 cut(s)	58, 159, 197
PpuMI	RGGWCCY	1 cut(s)	103
Psp5II	RGGWCCY	1 cut(s)	103
PspFI	CCCAGC	1 cut(s)	116
PspN4I	GGNNCC	2 cut(s)	105, 191
PspPI	GGNCC	1 cut(s)	103
PspPPI	RGGWCCY	1 cut(s)	103
PstNI	CAGNNNCTG	1 cut(s)	11
RsaI	GTAC	2 cut(s)	86, 262
RsaNI	GTAC	2 cut(s)	85, 261
SatI	GCNGC	3 cut(s)	57, 158, 196
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	1 cut(s)	103
SetI	ASST	5 cut(s)	72, 150, 159, 173, 236
SfaNI	GCATC	3 cut(s)	207, 278, 300
SinI	GGWCC	1 cut(s)	103
SphI	GCATGC	1 cut(s)	283
SsiI	CCGC	4 cut(s)	46, 56, 139, 193
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	1 cut(s)	59
TseI	GCWGC	2 cut(s)	157, 195
TspGWI	ACGGA	2 cut(s)	227, 248
VpaK11BI	GGWCC	1 cut(s)	103
XagI	CCTNNNNNAGG	1 cut(s)	98
XceI	RCATGY	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	225
XmnI	GAANNNNTTC	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.