MD03G1252400.v1.1

Ribosomal protein S14

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0006836
Physical Location & Seq
Reverse (-)
33980967 .. 33983293
2327 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1252400.v1.1.491

Sequence Viewer

Length: 312 bp
ATGTCAGTGTCTGAAGAAAATGCCAACATTCGAGACCACCACCGCCGCTTGCTGGCGGCGAAATACGAGCTAAGGCGGAACCTGTACAAGGCCCTCTGCAAGGACCCAACCCTTCCCAGCGATCTGCGCGAGGAGAACCGCTTCAAGCTCTCCAAGCTGCCCCGGAACAGCTCCTTCACGCGCGTCAGGAACCGCTGCATCTTCTCCGGCCGCGCACGCGCCGTCTACGAGACCTTCCGTATGTCCCGTATCGTTTTCCGTGCTCTCGCCTCCAAAGGCATGCTAAATGGCGTTAAGAAAGCGTCTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S14

Protein Analysis

104

Amino Acids

12.1

Weight (kDa)

11.11

Isoelectric Point (pI)

50.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S14 PF00253 49 - 102 1e-23 Ribosomal protein S14p/S29e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 225
AccII CGCG 5 cut(s) 129, 181, 183, 213, 219
AciI CCGC 7 cut(s) 43, 46, 56, 76, 139, 193, 211
AcoI YGGCCR 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 33
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 3 cut(s) 52, 88, 100
AgsI TTSAA 1 cut(s) 145
AluBI AGCT 4 cut(s) 70, 148, 157, 171
AluI AGCT 4 cut(s) 70, 148, 157, 171
Alw21I GWGCWC 1 cut(s) 265
Alw26I GTCTC 2 cut(s) 27, 224
AlwNI CAGNNNCTG 1 cut(s) 11
AoxI GGCC 2 cut(s) 90, 208
ApeKI GCWGC 2 cut(s) 157, 195
Asp700I GAANNNNTTC 1 cut(s) 140
AspLEI GCGC 4 cut(s) 129, 183, 215, 221
AspS9I GGNCC 2 cut(s) 91, 103
AsuC2I CCSGG 1 cut(s) 163
AvaII GGWCC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 2 cut(s) 144, 182
BceAI ACGGC 1 cut(s) 206
BcnI CCSGG 1 cut(s) 163
BcoDI GTCTC 2 cut(s) 27, 224
BisI GCNGC 5 cut(s) 46, 57, 158, 196, 211
BlsI GCNGC 5 cut(s) 47, 58, 159, 197, 212
Bme1390I CCNGG 1 cut(s) 163
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 2 cut(s) 91, 103
BmiI GGNNCC 3 cut(s) 80, 105, 191
BmrFI CCNGG 1 cut(s) 163
BmsI GCATC 1 cut(s) 207
Bpu10I CCTNAGC 1 cut(s) 71
BpuMI CCSGG 1 cut(s) 163
BsaI GGTCTC 2 cut(s) 27, 224
BsaJI CCNNGG 1 cut(s) 161
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 88, 100
BseDI CCNNGG 1 cut(s) 161
BseLI CCNNNNNNNGG 3 cut(s) 52, 88, 100
BseRI GAGGAG 1 cut(s) 146
BseX3I CGGCCG 1 cut(s) 208
BseXI GCAGC 2 cut(s) 144, 182
BseYI CCCAGC 1 cut(s) 116
Bsh1236I CGCG 5 cut(s) 129, 181, 183, 213, 219
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 2 cut(s) 92, 210
BsiEI CGRYCG 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 265
BsiSI CCGG 2 cut(s) 163, 207
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 3 cut(s) 52, 88, 100
BsmAI GTCTC 2 cut(s) 27, 224
BsmFI GGGAC 1 cut(s) 229
BsnI GGCC 2 cut(s) 92, 210
Bso31I GGTCTC 2 cut(s) 27, 224
Bsp1286I GDGCHC 1 cut(s) 265
Bsp1407I TGTACA 1 cut(s) 84
Bsp143I GATC 1 cut(s) 121
BspACI CCGC 7 cut(s) 43, 46, 56, 76, 139, 193, 211
BspANI GGCC 2 cut(s) 92, 210
BspFNI CGCG 5 cut(s) 129, 181, 183, 213, 219
BspLI GGNNCC 3 cut(s) 80, 105, 191
BspTNI GGTCTC 2 cut(s) 27, 224
BsrGI TGTACA 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 1 cut(s) 121
BstAUI TGTACA 1 cut(s) 84
BstC8I GCNNGC 4 cut(s) 50, 54, 217, 281
BstDEI CTNAG 1 cut(s) 71
BstENI CCTNNNNNAGG 2 cut(s) 86, 98
BstFNI CGCG 5 cut(s) 129, 181, 183, 213, 219
BstHHI GCGC 4 cut(s) 129, 183, 215, 221
BstKTI GATC 1 cut(s) 124
BstMAI GTCTC 2 cut(s) 27, 224
BstMBI GATC 1 cut(s) 121
BstMCI CGRYCG 1 cut(s) 211
BstMWI GCNNNNNNNGC 3 cut(s) 126, 154, 216
BstNSI RCATGY 1 cut(s) 283
BstSCI CCNGG 1 cut(s) 161
BstUI CGCG 5 cut(s) 129, 181, 183, 213, 219
BstV1I GCAGC 2 cut(s) 144, 182
BstZI CGGCCG 1 cut(s) 208
BsuRI GGCC 2 cut(s) 92, 210
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 4 cut(s) 50, 54, 217, 281
CaiI CAGNNNCTG 1 cut(s) 11
CfoI GCGC 4 cut(s) 129, 183, 215, 221
Cfr13I GGNCC 2 cut(s) 91, 103
CseI GACGC 2 cut(s) 172, 291
Csp6I GTAC 1 cut(s) 85
CviAII CATG 1 cut(s) 280
CviJI RGCY 6 cut(s) 70, 92, 148, 157, 171, 210
CviKI_1 RGCY 6 cut(s) 70, 92, 148, 157, 171, 210
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 1 cut(s) 71
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
EaeI YGGCCR 1 cut(s) 208
EagI CGGCCG 1 cut(s) 208
EciI GGCGGA 1 cut(s) 91
EclXI CGGCCG 1 cut(s) 208
Eco31I GGTCTC 2 cut(s) 27, 224
Eco47I GGWCC 1 cut(s) 103
Eco52I CGGCCG 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 33
EcoNI CCTNNNNNAGG 2 cut(s) 86, 98
EcoO109I RGGNCCY 2 cut(s) 91, 103
FaeI CATG 1 cut(s) 283
FaiI YATR 2 cut(s) 242, 281
FaqI GGGAC 1 cut(s) 229
FatI CATG 1 cut(s) 279
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 5 cut(s) 46, 57, 158, 196, 211
Fsp4HI GCNGC 5 cut(s) 46, 57, 158, 196, 211
GlaI GCGC 4 cut(s) 128, 182, 214, 220
GluI GCNGC 5 cut(s) 46, 57, 158, 196, 211
GsaI CCCAGC 1 cut(s) 120
HaeIII GGCC 2 cut(s) 92, 210
HapII CCGG 2 cut(s) 163, 207
HgaI GACGC 2 cut(s) 172, 291
HhaI GCGC 4 cut(s) 129, 183, 215, 221
Hin1II CATG 1 cut(s) 283
Hin6I GCGC 4 cut(s) 127, 181, 213, 219
HinP1I GCGC 4 cut(s) 127, 181, 213, 219
HpaII CCGG 2 cut(s) 163, 207
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 2 cut(s) 32, 187
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 3 cut(s) 122, 184, 244
HpyCH4V TGCA 2 cut(s) 99, 198
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 154, 216
HpyF3I CTNAG 1 cut(s) 71
Hsp92II CATG 1 cut(s) 283
HspAI GCGC 4 cut(s) 127, 181, 213, 219
Kzo9I GATC 1 cut(s) 121
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 6 cut(s) 38, 95, 130, 172, 176, 220
Lsp1109I GCAGC 2 cut(s) 144, 182
LweI GCATC 1 cut(s) 207
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 2 cut(s) 26, 193
MhlI GDGCHC 1 cut(s) 265
MnlI CCTC 3 cut(s) 104, 124, 280
MroXI GAANNNNTTC 1 cut(s) 140
MseI TTAA 1 cut(s) 294
MspA1I CMGCKG 1 cut(s) 195
MspI CCGG 2 cut(s) 163, 207
MspR9I CCNGG 1 cut(s) 163
MvnI CGCG 5 cut(s) 129, 181, 183, 213, 219
MwoI GCNNNNNNNGC 3 cut(s) 126, 154, 216
NciI CCSGG 1 cut(s) 163
NdeII GATC 1 cut(s) 121
NlaIII CATG 1 cut(s) 283
NlaIV GGNNCC 3 cut(s) 80, 105, 191
NspI RCATGY 1 cut(s) 283
PaeI GCATGC 1 cut(s) 283
PdmI GAANNNNTTC 1 cut(s) 140
PkrI GCNGC 5 cut(s) 47, 58, 159, 197, 212
PpuMI RGGWCCY 1 cut(s) 103
Psp5II RGGWCCY 1 cut(s) 103
PspFI CCCAGC 1 cut(s) 116
PspN4I GGNNCC 3 cut(s) 80, 105, 191
PspPI GGNCC 2 cut(s) 91, 103
PspPPI RGGWCCY 1 cut(s) 103
PstNI CAGNNNCTG 1 cut(s) 11
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 5 cut(s) 46, 57, 158, 196, 211
Sau3AI GATC 1 cut(s) 121
Sau96I GGNCC 2 cut(s) 91, 103
ScrFI CCNGG 1 cut(s) 163
SduI GDGCHC 1 cut(s) 265
SetI ASST 6 cut(s) 72, 84, 150, 159, 173, 236
SfaNI GCATC 1 cut(s) 207
SinI GGWCC 1 cut(s) 103
SphI GCATGC 1 cut(s) 283
SsiI CCGC 7 cut(s) 43, 46, 56, 76, 139, 193, 211
StyD4I CCNGG 1 cut(s) 161
TaqI TCGA 1 cut(s) 31
TatI WGTACW 1 cut(s) 84
TauI GCSGC 3 cut(s) 48, 59, 213
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 1 cut(s) 12
TseI GCWGC 2 cut(s) 157, 195
TspGWI ACGGA 2 cut(s) 227, 248
TspRI CASTG 1 cut(s) 12
VpaK11BI GGWCC 1 cut(s) 103
XagI CCTNNNNNAGG 2 cut(s) 86, 98
XceI RCATGY 1 cut(s) 283
XmiI GTMKAC 1 cut(s) 225
XmnI GAANNNNTTC 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.