Rw5G034710

Ribosomal protein S14

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0006836
Physical Location & Seq
Reverse (-)
59836498 .. 59836808
311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G034710.1

Sequence Viewer

Length: 237 bp
ATGTCAGTGTGTAGAGAAAACGCGAACATCCGAGACAACCACCGCCGTCTGCTGGCGGAGAAATTCGAGCTGCGGCGGAACCTGTACAAGGCGCTCTCCTTCACCCGAATCAGGAACCGCTGCATCTTCTCCGGCCGAGGCCGCGCCGTCTACGAGACCTTCCGCATGTCCCGCATCGTCTTCCGCGCTCTCGCCTCCAAGGGCATGCTCAACGGCGTCAAGAAGGCTTCCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S14

Protein Analysis

78

Amino Acids

9.24

Weight (kDa)

11.63

Isoelectric Point (pI)

43.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S14 PF00253 32 - 77 1.3e-19 Ribosomal protein S14p/S29e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 150
AccII CGCG 3 cut(s) 23, 144, 186
AciI CCGC 9 cut(s) 43, 56, 73, 76, 118, 142, 163, 172, 184
AcoI YGGCCR 1 cut(s) 133
AcsI RAATTY 1 cut(s) 62
AcyI GRCGYC 1 cut(s) 216
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 3 cut(s) 52, 88, 111
AjnI CCWGG 1 cut(s) 230
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw26I GTCTC 2 cut(s) 27, 149
AoxI GGCC 2 cut(s) 133, 139
ApeKI GCWGC 2 cut(s) 70, 120
ApoI RAATTY 1 cut(s) 62
AspLEI GCGC 3 cut(s) 94, 146, 188
AsuHPI GGTGA 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 172
BbvI GCAGC 2 cut(s) 57, 107
BceAI ACGGC 3 cut(s) 30, 131, 229
BciT130I CCWGG 1 cut(s) 232
BcoDI GTCTC 2 cut(s) 27, 149
BfoI RGCGCY 1 cut(s) 95
BisI GCNGC 4 cut(s) 71, 74, 121, 142
BlsI GCNGC 4 cut(s) 72, 75, 122, 143
Bme1390I CCNGG 1 cut(s) 232
BmiI GGNNCC 2 cut(s) 80, 116
BmrFI CCNGG 1 cut(s) 232
BmsI GCATC 2 cut(s) 132, 183
BpiI GAAGAC 1 cut(s) 172
BsaHI GRCGYC 1 cut(s) 216
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 136, 198
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 88, 111
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 2 cut(s) 136, 198
BseGI GGATG 1 cut(s) 27
BseLI CCNNNNNNNGG 3 cut(s) 52, 88, 111
BseX3I CGGCCG 1 cut(s) 133
BseXI GCAGC 2 cut(s) 57, 107
Bsh1236I CGCG 3 cut(s) 23, 144, 186
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 2 cut(s) 135, 141
BsiEI CGRYCG 1 cut(s) 136
BsiSI CCGG 1 cut(s) 132
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 3 cut(s) 52, 88, 111
BsmAI GTCTC 2 cut(s) 27, 149
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 2 cut(s) 135, 141
Bso31I GGTCTC 1 cut(s) 149
Bsp1407I TGTACA 1 cut(s) 84
BspACI CCGC 9 cut(s) 43, 56, 73, 76, 118, 142, 163, 172, 184
BspANI GGCC 2 cut(s) 135, 141
BspFNI CGCG 3 cut(s) 23, 144, 186
BspLI GGNNCC 2 cut(s) 80, 116
BspTNI GGTCTC 1 cut(s) 149
BsrGI TGTACA 1 cut(s) 84
BssECI CCNNGG 2 cut(s) 136, 198
BssNI GRCGYC 1 cut(s) 216
BssT1I CCWWGG 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 232
BstACI GRCGYC 1 cut(s) 216
BstAUI TGTACA 1 cut(s) 84
BstC8I GCNNGC 2 cut(s) 54, 206
BstENI CCTNNNNNAGG 1 cut(s) 86
BstF5I GGATG 1 cut(s) 27
BstFNI CGCG 3 cut(s) 23, 144, 186
BstH2I RGCGCY 1 cut(s) 95
BstHHI GCGC 3 cut(s) 94, 146, 188
BstMAI GTCTC 2 cut(s) 27, 149
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 2 cut(s) 141, 171
BstNI CCWGG 1 cut(s) 232
BstNSI RCATGY 2 cut(s) 169, 208
BstSCI CCNGG 1 cut(s) 230
BstUI CGCG 3 cut(s) 23, 144, 186
BstV1I GCAGC 2 cut(s) 57, 107
BstV2I GAAGAC 1 cut(s) 172
BstZI CGGCCG 1 cut(s) 133
BsuRI GGCC 2 cut(s) 135, 141
BtsCI GGATG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 2 cut(s) 54, 206
CfoI GCGC 3 cut(s) 94, 146, 188
CseI GACGC 1 cut(s) 205
Csp6I GTAC 1 cut(s) 85
CviAII CATG 2 cut(s) 166, 205
CviJI RGCY 4 cut(s) 70, 135, 141, 227
CviKI_1 RGCY 4 cut(s) 70, 135, 141, 227
CviQI GTAC 1 cut(s) 85
EaeI YGGCCR 1 cut(s) 133
EagI CGGCCG 1 cut(s) 133
EciI GGCGGA 2 cut(s) 71, 91
EclXI CGGCCG 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 149
Eco52I CGGCCG 1 cut(s) 133
EcoNI CCTNNNNNAGG 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 230
EcoT14I CCWWGG 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 2 cut(s) 169, 208
FaiI YATR 2 cut(s) 167, 206
FaqI GGGAC 1 cut(s) 154
FatI CATG 2 cut(s) 165, 204
FauI CCCGC 1 cut(s) 179
FblI GTMKAC 1 cut(s) 150
Fnu4HI GCNGC 4 cut(s) 71, 74, 121, 142
FokI GGATG 1 cut(s) 14
Fsp4HI GCNGC 4 cut(s) 71, 74, 121, 142
GlaI GCGC 3 cut(s) 93, 145, 187
GluI GCNGC 4 cut(s) 71, 74, 121, 142
HaeII RGCGCY 1 cut(s) 95
HaeIII GGCC 2 cut(s) 135, 141
HapII CCGG 1 cut(s) 132
HgaI GACGC 1 cut(s) 205
HhaI GCGC 3 cut(s) 94, 146, 188
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 2 cut(s) 169, 208
Hin6I GCGC 3 cut(s) 92, 144, 186
HinP1I GCGC 3 cut(s) 92, 144, 186
HinfI GANTC 1 cut(s) 108
HpaII CCGG 1 cut(s) 132
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 1 cut(s) 32
Hpy188III TCNNGA 2 cut(s) 112, 220
Hpy8I GTNNAC 1 cut(s) 151
HpyAV CCTTC 3 cut(s) 109, 169, 217
HpyCH4V TGCA 1 cut(s) 123
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 171
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 2 cut(s) 169, 208
HspAI GCGC 3 cut(s) 92, 144, 186
LpnPI CCDG 5 cut(s) 38, 95, 97, 145, 217
Lsp1109I GCAGC 2 cut(s) 57, 107
LweI GCATC 2 cut(s) 132, 183
MboII GAAGA 2 cut(s) 118, 172
MluCI AATT 1 cut(s) 62
MnlI CCTC 2 cut(s) 131, 205
MspA1I CMGCKG 1 cut(s) 120
MspI CCGG 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 232
MvaI CCWGG 1 cut(s) 232
MvnI CGCG 3 cut(s) 23, 144, 186
MwoI GCNNNNNNNGC 2 cut(s) 141, 171
NlaIII CATG 2 cut(s) 169, 208
NlaIV GGNNCC 2 cut(s) 80, 116
NmeAIII GCCGAG 1 cut(s) 161
NspI RCATGY 2 cut(s) 169, 208
PaeI GCATGC 1 cut(s) 208
PfeI GAWTC 1 cut(s) 108
PkrI GCNGC 4 cut(s) 72, 75, 122, 143
Psp6I CCWGG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 2 cut(s) 80, 116
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SatI GCNGC 4 cut(s) 71, 74, 121, 142
ScrFI CCNGG 1 cut(s) 232
SetI ASST 3 cut(s) 72, 84, 161
SfaNI GCATC 2 cut(s) 132, 183
SphI GCATGC 1 cut(s) 208
Sse9I AATT 1 cut(s) 62
SsiI CCGC 9 cut(s) 43, 56, 73, 76, 118, 142, 163, 172, 184
StyD4I CCNGG 1 cut(s) 230
StyI CCWWGG 1 cut(s) 198
TaqI TCGA 1 cut(s) 66
TasI AATT 1 cut(s) 62
TatI WGTACW 1 cut(s) 84
TauI GCSGC 2 cut(s) 76, 144
TfiI GAWTC 1 cut(s) 108
TscAI CASTG 1 cut(s) 12
TseI GCWGC 2 cut(s) 70, 120
TspRI CASTG 1 cut(s) 12
XagI CCTNNNNNAGG 1 cut(s) 86
XapI RAATTY 1 cut(s) 62
XceI RCATGY 2 cut(s) 169, 208
XmiI GTMKAC 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.