Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006836

Physical Location & Seq

Genomic Coordinates Reverse (-)

6605655 .. 6608688

Gene Structure 3034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1069700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTCAGTGTCTGAGGAAAATGCCAACATACGGGACCACCACCGCCGCTTGCTGGCGGCGAAATACGAGCTGAGACGGAACCTGTACAAGGCCCTCTGCAAGGACCCAAGCCTTCCCAGCGATCTGCGCGAGGAGAACCGCTTCAAGCTCTCCAAGCTGCCCCGGAACAGCTCCTTCACGCGCGTCAGGAACCGCTGCATCTTCTCTGGCCGCGCACGCGCCGTCTACGAGACCTTCCGTATGTCCCGTATCGTTTTCCGTTCTCTTGCCTCCAAAGGCATGCTCAATGGCGTGAAGAAAGCGTCTTGGGAGTTGCCCAAGCAAATTAAGAAGAGAGATCTGAAGCGTCGAAAGAGTACTGAGGCTGCTGGTACATCGAGTCTGAATGCCCAGAATTATACCAATCTATTCGGGCAGCGGTCCTGCATCGCTTTGCGGTTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S14

Protein Analysis

149

Amino Acids

17.22

Weight (kDa)

11.09

Isoelectric Point (pI)

59.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S14	PF00253	49 - 102	1.8e-23	Ribosomal protein S14p/S29e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34520
fragaria_vesca	FvH4_3g30490 FvH4_7g06080
malus_domestica	MD03G1252400.v1.1 MD07G1069700.v1.1 MD07G1070600.v1.1
prunus_persica	Prupe.2G087000_v2.0.a1 Prupe.2G087700_v2.0.a1 Prupe.2G087700_v2.0.a1 Prupe.8G094900_v2.0.a1 Prupe.8G094900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0333591 RchiOBHm_Chr5g0056441
rosa_laevigata	RLG00000029548
rosa_multiflora	Rmu_sc0000317.1_g000046 Rmu_sc0028037.1_g000005
rosa_roxburghii	Rroxscaffold_1G00023870 Rroxscaffold_4G00317390
rosa_rugosa	Rorug05G0300100
rosa_samantha	Rh1AG133200 Rh1CG127400 Rh5BG381900 Rh5CG404700
rosa_wichuraiana	Rw1G010990 Rw1G011090 Rw5G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	225
AccII	CGCG	5 cut(s)	129, 181, 183, 213, 219
AciI	CCGC	8 cut(s)	43, 46, 56, 139, 193, 211, 418, 436
AcoI	YGGCCR	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	362
AfaI	GTAC	3 cut(s)	86, 358, 373
AfiI	CCNNNNNNNGG	4 cut(s)	30, 52, 88, 100
AgsI	TTSAA	1 cut(s)	145
AluBI	AGCT	4 cut(s)	70, 148, 157, 171
AluI	AGCT	4 cut(s)	70, 148, 157, 171
Alw26I	GTCTC	2 cut(s)	67, 224
AlwNI	CAGNNNCTG	1 cut(s)	11
AoxI	GGCC	2 cut(s)	90, 208
ApeKI	GCWGC	4 cut(s)	157, 195, 365, 415
Asp700I	GAANNNNTTC	1 cut(s)	140
AspLEI	GCGC	4 cut(s)	129, 183, 215, 221
AspS9I	GGNCC	4 cut(s)	34, 91, 103, 420
AsuC2I	CCSGG	1 cut(s)	163
AvaII	GGWCC	3 cut(s)	34, 103, 420
BbvI	GCAGC	4 cut(s)	144, 182, 352, 427
BceAI	ACGGC	1 cut(s)	206
BcnI	CCSGG	1 cut(s)	163
BcoDI	GTCTC	2 cut(s)	67, 224
BglII	AGATCT	1 cut(s)	337
BisI	GCNGC	7 cut(s)	46, 57, 158, 196, 211, 366, 416
BlsI	GCNGC	7 cut(s)	47, 58, 159, 197, 212, 367, 417
BmcAI	AGTACT	1 cut(s)	358
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	3 cut(s)	34, 103, 420
BmgT120I	GGNCC	4 cut(s)	34, 91, 103, 420
BmiI	GGNNCC	4 cut(s)	35, 80, 105, 191
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	2 cut(s)	207, 435
BpuMI	CCSGG	1 cut(s)	163
BsaI	GGTCTC	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	4 cut(s)	30, 52, 88, 100
BseDI	CCNNGG	1 cut(s)	161
BseLI	CCNNNNNNNGG	4 cut(s)	30, 52, 88, 100
BseMII	CTCAG	2 cut(s)	62, 351
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	4 cut(s)	144, 182, 352, 427
BseYI	CCCAGC	1 cut(s)	116
Bsh1236I	CGCG	5 cut(s)	129, 181, 183, 213, 219
BshFI	GGCC	2 cut(s)	92, 210
BsiSI	CCGG	1 cut(s)	163
BslFI	GGGAC	2 cut(s)	47, 229
BslI	CCNNNNNNNGG	4 cut(s)	30, 52, 88, 100
BsmAI	GTCTC	2 cut(s)	67, 224
BsmBI	CGTCTC	1 cut(s)	67
BsmFI	GGGAC	2 cut(s)	47, 229
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	2 cut(s)	92, 210
Bso31I	GGTCTC	1 cut(s)	224
Bsp1407I	TGTACA	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	121, 337
BspACI	CCGC	8 cut(s)	43, 46, 56, 139, 193, 211, 418, 436
BspANI	GGCC	2 cut(s)	92, 210
BspCNI	CTCAG	3 cut(s)	4, 63, 352
BspFNI	CGCG	5 cut(s)	129, 181, 183, 213, 219
BspLI	GGNNCC	4 cut(s)	35, 80, 105, 191
BspTNI	GGTCTC	1 cut(s)	224
BsrGI	TGTACA	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	161
BssMI	GATC	2 cut(s)	121, 337
Bst6I	CTCTTC	1 cut(s)	326
BstAUI	TGTACA	1 cut(s)	84
BstC8I	GCNNGC	4 cut(s)	50, 54, 217, 281
BstDEI	CTNAG	3 cut(s)	12, 71, 360
BstENI	CCTNNNNNAGG	2 cut(s)	86, 98
BstFNI	CGCG	5 cut(s)	129, 181, 183, 213, 219
BstHHI	GCGC	4 cut(s)	129, 183, 215, 221
BstKTI	GATC	2 cut(s)	124, 340
BstMAI	GTCTC	2 cut(s)	67, 224
BstMBI	GATC	2 cut(s)	121, 337
BstMWI	GCNNNNNNNGC	4 cut(s)	117, 126, 154, 216
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	1 cut(s)	161
BstUI	CGCG	5 cut(s)	129, 181, 183, 213, 219
BstV1I	GCAGC	4 cut(s)	144, 182, 352, 427
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuRI	GGCC	2 cut(s)	92, 210
BtgZI	GCGATG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	12
Cac8I	GCNNGC	4 cut(s)	50, 54, 217, 281
CaiI	CAGNNNCTG	1 cut(s)	11
CfoI	GCGC	4 cut(s)	129, 183, 215, 221
Cfr13I	GGNCC	4 cut(s)	34, 91, 103, 420
CseI	GACGC	3 cut(s)	172, 291, 335
Csp6I	GTAC	3 cut(s)	85, 357, 372
CviAII	CATG	1 cut(s)	280
CviJI	RGCY	8 cut(s)	70, 92, 111, 148, 157, 171, 210, 365
CviKI_1	RGCY	8 cut(s)	70, 92, 111, 148, 157, 171, 210, 365
CviQI	GTAC	3 cut(s)	85, 357, 372
DdeI	CTNAG	3 cut(s)	12, 71, 360
DpnI	GATC	2 cut(s)	123, 339
DpnII	GATC	2 cut(s)	121, 337
EaeI	YGGCCR	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
Eco31I	GGTCTC	1 cut(s)	224
Eco47I	GGWCC	3 cut(s)	34, 103, 420
Eco57I	CTGAAG	1 cut(s)	362
EcoNI	CCTNNNNNAGG	2 cut(s)	86, 98
EcoO109I	RGGNCCY	2 cut(s)	91, 103
Esp3I	CGTCTC	1 cut(s)	67
FaeI	CATG	1 cut(s)	283
FaiI	YATR	4 cut(s)	29, 242, 281, 399
FaqI	GGGAC	2 cut(s)	47, 229
FatI	CATG	1 cut(s)	279
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	7 cut(s)	46, 57, 158, 196, 211, 366, 416
Fsp4HI	GCNGC	7 cut(s)	46, 57, 158, 196, 211, 366, 416
GlaI	GCGC	4 cut(s)	128, 182, 214, 220
GluI	GCNGC	7 cut(s)	46, 57, 158, 196, 211, 366, 416
GsaI	CCCAGC	1 cut(s)	120
HaeIII	GGCC	2 cut(s)	92, 210
HapII	CCGG	1 cut(s)	163
HgaI	GACGC	3 cut(s)	172, 291, 335
HhaI	GCGC	4 cut(s)	129, 183, 215, 221
Hin1II	CATG	1 cut(s)	283
Hin6I	GCGC	4 cut(s)	127, 181, 213, 219
HinP1I	GCGC	4 cut(s)	127, 181, 213, 219
HinfI	GANTC	1 cut(s)	379
HpaII	CCGG	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	3 cut(s)	13, 342, 384
Hpy188III	TCNNGA	1 cut(s)	187
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	1 cut(s)	351
HpyAV	CCTTC	3 cut(s)	122, 184, 244
HpyCH4V	TGCA	3 cut(s)	99, 198, 426
HpyF10VI	GCNNNNNNNGC	4 cut(s)	117, 126, 154, 216
HpyF3I	CTNAG	3 cut(s)	12, 71, 360
Hsp92II	CATG	1 cut(s)	283
HspAI	GCGC	4 cut(s)	127, 181, 213, 219
Kzo9I	GATC	2 cut(s)	121, 337
LmnI	GCTCC	1 cut(s)	176
LpnPI	CCDG	9 cut(s)	38, 95, 130, 172, 176, 192, 354, 404, 436
Lsp1109I	GCAGC	4 cut(s)	144, 182, 352, 427
LweI	GCATC	2 cut(s)	207, 435
MalI	GATC	2 cut(s)	123, 339
MboI	GATC	2 cut(s)	121, 337
MboII	GAAGA	3 cut(s)	193, 307, 343
MflI	RGATCY	1 cut(s)	337
MluCI	AATT	2 cut(s)	324, 394
MlyI	GAGTC	1 cut(s)	388
MnlI	CCTC	5 cut(s)	7, 104, 124, 280, 355
MroXI	GAANNNNTTC	1 cut(s)	140
MseI	TTAA	1 cut(s)	327
MspA1I	CMGCKG	2 cut(s)	195, 418
MspI	CCGG	1 cut(s)	163
MspR9I	CCNGG	1 cut(s)	163
Mva1269I	GAATGC	1 cut(s)	391
MvnI	CGCG	5 cut(s)	129, 181, 183, 213, 219
MwoI	GCNNNNNNNGC	4 cut(s)	117, 126, 154, 216
NciI	CCSGG	1 cut(s)	163
NdeII	GATC	2 cut(s)	121, 337
NlaIII	CATG	1 cut(s)	283
NlaIV	GGNNCC	4 cut(s)	35, 80, 105, 191
NspI	RCATGY	1 cut(s)	283
PaeI	GCATGC	1 cut(s)	283
PctI	GAATGC	1 cut(s)	391
PdmI	GAANNNNTTC	1 cut(s)	140
PkrI	GCNGC	7 cut(s)	47, 58, 159, 197, 212, 367, 417
PleI	GAGTC	1 cut(s)	387
PpsI	GAGTC	1 cut(s)	387
PpuMI	RGGWCCY	1 cut(s)	103
Psp5II	RGGWCCY	1 cut(s)	103
PspFI	CCCAGC	1 cut(s)	116
PspN4I	GGNNCC	4 cut(s)	35, 80, 105, 191
PspPI	GGNCC	4 cut(s)	34, 91, 103, 420
PspPPI	RGGWCCY	1 cut(s)	103
PstNI	CAGNNNCTG	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	337
RsaI	GTAC	3 cut(s)	86, 358, 373
RsaNI	GTAC	3 cut(s)	85, 357, 372
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	7 cut(s)	46, 57, 158, 196, 211, 366, 416
Sau3AI	GATC	2 cut(s)	121, 337
Sau96I	GGNCC	4 cut(s)	34, 91, 103, 420
ScaI	AGTACT	1 cut(s)	358
SchI	GAGTC	1 cut(s)	388
ScrFI	CCNGG	1 cut(s)	163
SetI	ASST	6 cut(s)	72, 84, 150, 159, 173, 236
SfaNI	GCATC	2 cut(s)	207, 435
SinI	GGWCC	3 cut(s)	34, 103, 420
SphI	GCATGC	1 cut(s)	283
Sse9I	AATT	2 cut(s)	324, 394
SsiI	CCGC	8 cut(s)	43, 46, 56, 139, 193, 211, 418, 436
StyD4I	CCNGG	1 cut(s)	161
TaqI	TCGA	2 cut(s)	349, 377
TasI	AATT	2 cut(s)	324, 394
TatI	WGTACW	2 cut(s)	84, 356
TauI	GCSGC	3 cut(s)	48, 59, 213
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	1 cut(s)	12
TseI	GCWGC	4 cut(s)	157, 195, 365, 415
TspGWI	ACGGA	3 cut(s)	91, 227, 248
TspRI	CASTG	1 cut(s)	12
VpaK11BI	GGWCC	3 cut(s)	34, 103, 420
XagI	CCTNNNNNAGG	2 cut(s)	86, 98
XceI	RCATGY	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	225
XmnI	GAANNNNTTC	1 cut(s)	140
ZrmI	AGTACT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.