Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006836

Physical Location & Seq

Genomic Coordinates Reverse (-)

13851050 .. 13854524

Gene Structure 3475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G087700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCAGTTTCTGAGGAAAATGCCAATATCCGAGACCACCATCGCCGGTTGCTGGCGGCGAAATACGAGCTGAGACGAAATCTGTACAAGGCCCTCTGCAAGGACCCAAGCCTTCCCAGCGACCTGCGCGAGGAGAACCGGTTCAAGCTCTCCAAGCTGCCCAGAAACAGCTCCTTCACGCGCGTCAGGAACCGCTGCATCTTCTCCGGCCGCGCACGCGCCGTCTACGAGACCTTCCGTATGTCCCGTATCGTCTTTCGTACTCTGGCCTCTAAAGGCATGCTCAATGGCATTAAGAAAGCGTCTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S14

Protein Analysis

104

Amino Acids

12.13

Weight (kDa)

11.11

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34520
fragaria_vesca	FvH4_3g30490 FvH4_7g06080
malus_domestica	MD03G1252400.v1.1 MD07G1069700.v1.1 MD07G1070600.v1.1
prunus_persica	Prupe.2G087000_v2.0.a1 Prupe.2G087700_v2.0.a1 Prupe.2G087700_v2.0.a1 Prupe.8G094900_v2.0.a1 Prupe.8G094900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0333591 RchiOBHm_Chr5g0056441
rosa_laevigata	RLG00000029548
rosa_multiflora	Rmu_sc0000317.1_g000046 Rmu_sc0028037.1_g000005
rosa_roxburghii	Rroxscaffold_1G00023870 Rroxscaffold_4G00317390
rosa_rugosa	Rorug05G0300100
rosa_samantha	Rh1AG133200 Rh1CG127400 Rh5BG381900 Rh5CG404700
rosa_wichuraiana	Rw1G010990 Rw1G011090 Rw5G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	132
AccI	GTMKAC	1 cut(s)	225
AccII	CGCG	5 cut(s)	129, 181, 183, 213, 219
AciI	CCGC	3 cut(s)	56, 193, 211
AcoI	YGGCCR	1 cut(s)	208
AfaI	GTAC	2 cut(s)	86, 262
AfiI	CCNNNNNNNGG	3 cut(s)	52, 100, 130
AgeI	ACCGGT	1 cut(s)	138
AgsI	TTSAA	1 cut(s)	145
AloI	GAACNNNNNNTCC	2 cut(s)	125, 157
AluBI	AGCT	4 cut(s)	70, 148, 157, 171
AluI	AGCT	4 cut(s)	70, 148, 157, 171
Alw26I	GTCTC	3 cut(s)	27, 67, 224
AlwNI	CAGNNNCTG	1 cut(s)	11
AoxI	GGCC	3 cut(s)	90, 208, 267
ApeKI	GCWGC	2 cut(s)	157, 195
AsiGI	ACCGGT	1 cut(s)	138
Asp700I	GAANNNNTTC	1 cut(s)	140
AspLEI	GCGC	4 cut(s)	129, 183, 215, 221
AspS9I	GGNCC	2 cut(s)	91, 103
AvaII	GGWCC	1 cut(s)	103
BbvI	GCAGC	2 cut(s)	144, 182
BccI	CCATC	1 cut(s)	48
BceAI	ACGGC	1 cut(s)	206
BcoDI	GTCTC	3 cut(s)	27, 67, 224
BfuAI	ACCTGC	1 cut(s)	132
BisI	GCNGC	4 cut(s)	57, 158, 196, 211
BlsI	GCNGC	4 cut(s)	58, 159, 197, 212
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	2 cut(s)	91, 103
BmiI	GGNNCC	2 cut(s)	105, 191
BmsI	GCATC	1 cut(s)	207
BsaI	GGTCTC	2 cut(s)	27, 224
BsaWI	WCCGGW	1 cut(s)	138
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 100, 130
Bse118I	RCCGGY	2 cut(s)	45, 138
BseLI	CCNNNNNNNGG	3 cut(s)	52, 100, 130
BseMII	CTCAG	1 cut(s)	62
BseRI	GAGGAG	1 cut(s)	146
BseX3I	CGGCCG	1 cut(s)	208
BseXI	GCAGC	2 cut(s)	144, 182
BseYI	CCCAGC	1 cut(s)	116
Bsh1236I	CGCG	5 cut(s)	129, 181, 183, 213, 219
Bsh1285I	CGRYCG	1 cut(s)	211
BshFI	GGCC	3 cut(s)	92, 210, 269
BshTI	ACCGGT	1 cut(s)	138
BsiEI	CGRYCG	1 cut(s)	211
BsiSI	CCGG	3 cut(s)	46, 139, 207
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	3 cut(s)	52, 100, 130
BsmAI	GTCTC	3 cut(s)	27, 67, 224
BsmBI	CGTCTC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	229
BsnI	GGCC	3 cut(s)	92, 210, 269
Bso31I	GGTCTC	2 cut(s)	27, 224
Bsp1407I	TGTACA	1 cut(s)	84
BspACI	CCGC	3 cut(s)	56, 193, 211
BspANI	GGCC	3 cut(s)	92, 210, 269
BspCNI	CTCAG	2 cut(s)	4, 63
BspFNI	CGCG	5 cut(s)	129, 181, 183, 213, 219
BspLI	GGNNCC	2 cut(s)	105, 191
BspMI	ACCTGC	1 cut(s)	132
BspTNI	GGTCTC	2 cut(s)	27, 224
BsrFI	RCCGGY	2 cut(s)	45, 138
BsrGI	TGTACA	1 cut(s)	84
BssAI	RCCGGY	2 cut(s)	45, 138
BstAUI	TGTACA	1 cut(s)	84
BstC8I	GCNNGC	3 cut(s)	54, 217, 281
BstDEI	CTNAG	2 cut(s)	12, 71
BstENI	CCTNNNNNAGG	2 cut(s)	98, 128
BstFNI	CGCG	5 cut(s)	129, 181, 183, 213, 219
BstHHI	GCGC	4 cut(s)	129, 183, 215, 221
BstMAI	GTCTC	3 cut(s)	27, 67, 224
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	4 cut(s)	117, 126, 154, 216
BstNSI	RCATGY	1 cut(s)	283
BstUI	CGCG	5 cut(s)	129, 181, 183, 213, 219
BstV1I	GCAGC	2 cut(s)	144, 182
BstZI	CGGCCG	1 cut(s)	208
BsuRI	GGCC	3 cut(s)	92, 210, 269
BtgZI	GCGATG	1 cut(s)	26
BveI	ACCTGC	1 cut(s)	132
Cac8I	GCNNGC	3 cut(s)	54, 217, 281
CaiI	CAGNNNCTG	1 cut(s)	11
CfoI	GCGC	4 cut(s)	129, 183, 215, 221
Cfr10I	RCCGGY	2 cut(s)	45, 138
Cfr13I	GGNCC	2 cut(s)	91, 103
CseI	GACGC	2 cut(s)	172, 291
Csp6I	GTAC	2 cut(s)	85, 261
CspAI	ACCGGT	1 cut(s)	138
CviAII	CATG	1 cut(s)	280
CviJI	RGCY	8 cut(s)	70, 92, 111, 148, 157, 171, 210, 269
CviKI_1	RGCY	8 cut(s)	70, 92, 111, 148, 157, 171, 210, 269
CviQI	GTAC	2 cut(s)	85, 261
DdeI	CTNAG	2 cut(s)	12, 71
EaeI	YGGCCR	1 cut(s)	208
EagI	CGGCCG	1 cut(s)	208
EclXI	CGGCCG	1 cut(s)	208
Eco31I	GGTCTC	2 cut(s)	27, 224
Eco47I	GGWCC	1 cut(s)	103
Eco52I	CGGCCG	1 cut(s)	208
EcoNI	CCTNNNNNAGG	2 cut(s)	98, 128
EcoO109I	RGGNCCY	2 cut(s)	91, 103
Esp3I	CGTCTC	1 cut(s)	67
FaeI	CATG	1 cut(s)	283
FaiI	YATR	2 cut(s)	242, 281
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	1 cut(s)	279
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	4 cut(s)	57, 158, 196, 211
Fsp4HI	GCNGC	4 cut(s)	57, 158, 196, 211
GlaI	GCGC	4 cut(s)	128, 182, 214, 220
GluI	GCNGC	4 cut(s)	57, 158, 196, 211
GsaI	CCCAGC	1 cut(s)	120
HaeIII	GGCC	3 cut(s)	92, 210, 269
HapII	CCGG	3 cut(s)	46, 139, 207
HgaI	GACGC	2 cut(s)	172, 291
HhaI	GCGC	4 cut(s)	129, 183, 215, 221
Hin1II	CATG	1 cut(s)	283
Hin6I	GCGC	4 cut(s)	127, 181, 213, 219
HinP1I	GCGC	4 cut(s)	127, 181, 213, 219
HpaII	CCGG	3 cut(s)	46, 139, 207
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	2 cut(s)	13, 32
Hpy188III	TCNNGA	1 cut(s)	187
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	3 cut(s)	122, 184, 244
HpyCH4V	TGCA	2 cut(s)	99, 198
HpyF10VI	GCNNNNNNNGC	4 cut(s)	117, 126, 154, 216
HpyF3I	CTNAG	2 cut(s)	12, 71
Hsp92II	CATG	1 cut(s)	283
HspAI	GCGC	4 cut(s)	127, 181, 213, 219
LmnI	GCTCC	1 cut(s)	176
LpnPI	CCDG	9 cut(s)	38, 59, 130, 137, 152, 172, 175, 220, 251
Lsp1109I	GCAGC	2 cut(s)	144, 182
LweI	GCATC	1 cut(s)	207
MboII	GAAGA	1 cut(s)	193
MnlI	CCTC	4 cut(s)	7, 104, 124, 280
MroXI	GAANNNNTTC	1 cut(s)	140
MseI	TTAA	1 cut(s)	294
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	3 cut(s)	46, 139, 207
MvnI	CGCG	5 cut(s)	129, 181, 183, 213, 219
MwoI	GCNNNNNNNGC	4 cut(s)	117, 126, 154, 216
NlaIII	CATG	1 cut(s)	283
NlaIV	GGNNCC	2 cut(s)	105, 191
NspI	RCATGY	1 cut(s)	283
PaeI	GCATGC	1 cut(s)	283
PdmI	GAANNNNTTC	1 cut(s)	140
PinAI	ACCGGT	1 cut(s)	138
PkrI	GCNGC	4 cut(s)	58, 159, 197, 212
PpuMI	RGGWCCY	1 cut(s)	103
Psp5II	RGGWCCY	1 cut(s)	103
PspFI	CCCAGC	1 cut(s)	116
PspN4I	GGNNCC	2 cut(s)	105, 191
PspPI	GGNCC	2 cut(s)	91, 103
PspPPI	RGGWCCY	1 cut(s)	103
PstNI	CAGNNNCTG	1 cut(s)	11
RsaI	GTAC	2 cut(s)	86, 262
RsaNI	GTAC	2 cut(s)	85, 261
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	4 cut(s)	57, 158, 196, 211
Sau96I	GGNCC	2 cut(s)	91, 103
SetI	ASST	6 cut(s)	72, 126, 150, 159, 173, 236
SfaNI	GCATC	1 cut(s)	207
SinI	GGWCC	1 cut(s)	103
SphI	GCATGC	1 cut(s)	283
SsiI	CCGC	3 cut(s)	56, 193, 211
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	2 cut(s)	59, 213
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TseI	GCWGC	2 cut(s)	157, 195
TspGWI	ACGGA	1 cut(s)	227
VpaK11BI	GGWCC	1 cut(s)	103
XagI	CCTNNNNNAGG	2 cut(s)	98, 128
XceI	RCATGY	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	225
XmnI	GAANNNNTTC	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.