Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028037.1

Orthogroup ID

OG0006836

Physical Location & Seq

Genomic Coordinates Reverse (-)

10876 .. 11187

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028037.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

atgtcagtttgccgagaaaacgccaacatccgagacaaccaccggcggttgctggcggagaaattcgagctccggcggaacctgtacaaggcgctgtgcaaagacactagcctccccgacgagttgcgcgaggagaaccggtacaagctctccaagcttcctcgaaatagctctttcactcgaatcaggaaccgctgcatcttctccggccgaggccgcgccgtctacgagaccttccgtatgtctcgtatcgtcttccgcgctctcgcctccaagggcatgctcaacggcgtcaagaaagcgtcatggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S14

Protein Analysis

103

Amino Acids

12.21

Weight (kDa)

10.9

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34520
fragaria_vesca	FvH4_3g30490 FvH4_7g06080
malus_domestica	MD03G1252400.v1.1 MD07G1069700.v1.1 MD07G1070600.v1.1
prunus_persica	Prupe.2G087000_v2.0.a1 Prupe.2G087700_v2.0.a1 Prupe.2G087700_v2.0.a1 Prupe.8G094900_v2.0.a1 Prupe.8G094900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0333591 RchiOBHm_Chr5g0056441
rosa_laevigata	RLG00000029548
rosa_multiflora	Rmu_sc0000317.1_g000046 Rmu_sc0028037.1_g000005
rosa_roxburghii	Rroxscaffold_1G00023870 Rroxscaffold_4G00317390
rosa_rugosa	Rorug05G0300100
rosa_samantha	Rh1AG133200 Rh1CG127400 Rh5BG381900 Rh5CG404700
rosa_wichuraiana	Rw1G010990 Rw1G011090 Rw5G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	225
AccII	CGCG	3 cut(s)	129, 219, 261
AciI	CCGC	6 cut(s)	46, 56, 76, 193, 217, 259
AcoI	YGGCCR	1 cut(s)	208
AcsI	RAATTY	1 cut(s)	62
AcyI	GRCGYC	1 cut(s)	291
AfaI	GTAC	2 cut(s)	86, 143
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgeI	ACCGGT	1 cut(s)	138
AluBI	AGCT	4 cut(s)	70, 148, 157, 171
AluI	AGCT	4 cut(s)	70, 148, 157, 171
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	3 cut(s)	27, 224, 249
AoxI	GGCC	2 cut(s)	208, 214
ApeKI	GCWGC	1 cut(s)	195
ApoI	RAATTY	1 cut(s)	62
AsiGI	ACCGGT	1 cut(s)	138
AspLEI	GCGC	4 cut(s)	94, 129, 221, 263
BanII	GRGCYC	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	182
BceAI	ACGGC	2 cut(s)	206, 304
BcoDI	GTCTC	3 cut(s)	27, 224, 249
BfaI	CTAG	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	95
BisI	GCNGC	2 cut(s)	196, 217
BlsI	GCNGC	2 cut(s)	197, 218
BmiI	GGNNCC	2 cut(s)	80, 191
BmsI	GCATC	1 cut(s)	207
BpiI	GAAGAC	1 cut(s)	247
BsaHI	GRCGYC	1 cut(s)	291
BsaI	GGTCTC	1 cut(s)	224
BsaJI	CCNNGG	2 cut(s)	211, 273
BsaWI	WCCGGW	1 cut(s)	138
BsaXI	ACNNNNNCTCC	4 cut(s)	125, 134, 155, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse118I	RCCGGY	2 cut(s)	42, 138
BseDI	CCNNGG	2 cut(s)	211, 273
BseGI	GGATG	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	146
BseX3I	CGGCCG	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	182
Bsh1236I	CGCG	3 cut(s)	129, 219, 261
Bsh1285I	CGRYCG	1 cut(s)	211
BshFI	GGCC	2 cut(s)	210, 216
BshTI	ACCGGT	1 cut(s)	138
BsiEI	CGRYCG	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	4 cut(s)	43, 73, 139, 207
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	3 cut(s)	27, 224, 249
BsnI	GGCC	2 cut(s)	210, 216
Bso31I	GGTCTC	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp1407I	TGTACA	1 cut(s)	84
BspACI	CCGC	6 cut(s)	46, 56, 76, 193, 217, 259
BspANI	GGCC	2 cut(s)	210, 216
BspFNI	CGCG	3 cut(s)	129, 219, 261
BspLI	GGNNCC	2 cut(s)	80, 191
BspTNI	GGTCTC	1 cut(s)	224
BsrFI	RCCGGY	2 cut(s)	42, 138
BsrGI	TGTACA	1 cut(s)	84
BssAI	RCCGGY	2 cut(s)	42, 138
BssECI	CCNNGG	2 cut(s)	211, 273
BssNI	GRCGYC	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	273
BstACI	GRCGYC	1 cut(s)	291
BstAUI	TGTACA	1 cut(s)	84
BstC8I	GCNNGC	2 cut(s)	54, 281
BstENI	CCTNNNNNAGG	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	27
BstFNI	CGCG	3 cut(s)	129, 219, 261
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	4 cut(s)	94, 129, 221, 263
BstMAI	GTCTC	3 cut(s)	27, 224, 249
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 216
BstNSI	RCATGY	1 cut(s)	283
BstUI	CGCG	3 cut(s)	129, 219, 261
BstV1I	GCAGC	1 cut(s)	182
BstV2I	GAAGAC	1 cut(s)	247
BstZI	CGGCCG	1 cut(s)	208
BsuRI	GGCC	2 cut(s)	210, 216
BtsCI	GGATG	1 cut(s)	27
Cac8I	GCNNGC	2 cut(s)	54, 281
CfoI	GCGC	4 cut(s)	94, 129, 221, 263
Cfr10I	RCCGGY	2 cut(s)	42, 138
CseI	GACGC	2 cut(s)	280, 291
Csp6I	GTAC	2 cut(s)	85, 142
CspAI	ACCGGT	1 cut(s)	138
CviAII	CATG	2 cut(s)	280, 306
CviJI	RGCY	7 cut(s)	70, 111, 148, 157, 171, 210, 216
CviKI_1	RGCY	7 cut(s)	70, 111, 148, 157, 171, 210, 216
CviQI	GTAC	2 cut(s)	85, 142
EaeI	YGGCCR	1 cut(s)	208
EagI	CGGCCG	1 cut(s)	208
EciI	GGCGGA	2 cut(s)	71, 91
Ecl136II	GAGCTC	1 cut(s)	70
EclXI	CGGCCG	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	224
Eco52I	CGGCCG	1 cut(s)	208
Eco53kI	GAGCTC	1 cut(s)	70
EcoICRI	GAGCTC	1 cut(s)	70
EcoNI	CCTNNNNNAGG	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	2 cut(s)	283, 309
FaiI	YATR	3 cut(s)	242, 281, 307
FatI	CATG	2 cut(s)	279, 305
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	2 cut(s)	196, 217
FokI	GGATG	1 cut(s)	14
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	2 cut(s)	196, 217
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	4 cut(s)	93, 128, 220, 262
GluI	GCNGC	2 cut(s)	196, 217
HaeII	RGCGCY	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	210, 216
HapII	CCGG	4 cut(s)	43, 73, 139, 207
HgaI	GACGC	2 cut(s)	280, 291
HhaI	GCGC	4 cut(s)	94, 129, 221, 263
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	2 cut(s)	283, 309
Hin6I	GCGC	4 cut(s)	92, 127, 219, 261
HinP1I	GCGC	4 cut(s)	92, 127, 219, 261
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	1 cut(s)	183
HpaII	CCGG	4 cut(s)	43, 73, 139, 207
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	1 cut(s)	32
Hpy188III	TCNNGA	2 cut(s)	187, 295
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	244
HpyCH4V	TGCA	2 cut(s)	99, 198
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 216
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	2 cut(s)	283, 309
HspAI	GCGC	4 cut(s)	92, 127, 219, 261
LmnI	GCTCC	1 cut(s)	75
LpnPI	CCDG	7 cut(s)	38, 56, 86, 95, 152, 172, 220
Lsp1109I	GCAGC	1 cut(s)	182
LweI	GCATC	1 cut(s)	207
MaeI	CTAG	1 cut(s)	108
MboII	GAAGA	2 cut(s)	193, 247
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	1 cut(s)	62
MnlI	CCTC	5 cut(s)	122, 124, 171, 206, 280
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	4 cut(s)	43, 73, 139, 207
MvnI	CGCG	3 cut(s)	129, 219, 261
MwoI	GCNNNNNNNGC	2 cut(s)	154, 216
NlaIII	CATG	2 cut(s)	283, 309
NlaIV	GGNNCC	2 cut(s)	80, 191
NmeAIII	GCCGAG	2 cut(s)	38, 236
NspI	RCATGY	1 cut(s)	283
PaeI	GCATGC	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	183
PinAI	ACCGGT	1 cut(s)	138
PkrI	GCNGC	2 cut(s)	197, 218
Psp124BI	GAGCTC	1 cut(s)	72
PspN4I	GGNNCC	2 cut(s)	80, 191
RsaI	GTAC	2 cut(s)	86, 143
RsaNI	GTAC	2 cut(s)	85, 142
SacI	GAGCTC	1 cut(s)	72
SatI	GCNGC	2 cut(s)	196, 217
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	6 cut(s)	72, 84, 150, 159, 173, 236
SfaNI	GCATC	1 cut(s)	207
SgrAI	CRCCGGYG	1 cut(s)	42
SphI	GCATGC	1 cut(s)	283
Sse9I	AATT	1 cut(s)	62
SsiI	CCGC	6 cut(s)	46, 56, 76, 193, 217, 259
SspMI	CTAG	1 cut(s)	108
SstI	GAGCTC	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	273
TaqI	TCGA	3 cut(s)	66, 163, 181
TasI	AATT	1 cut(s)	62
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	1 cut(s)	219
TfiI	GAWTC	1 cut(s)	183
TseI	GCWGC	1 cut(s)	195
TspGWI	ACGGA	1 cut(s)	227
XagI	CCTNNNNNAGG	1 cut(s)	86
XapI	RAATTY	1 cut(s)	62
XceI	RCATGY	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.