Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003756

Physical Location & Seq

Genomic Coordinates Forward (+)

15445294 .. 15446621

Gene Structure 1328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G36830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCCGATCAGAAACATCGCCATTGGCCGTCCAGATGAAGCCACCCGTCCCGATGCCTTAAAGGCGGCGTTGGCTGAGTTCATTTCAACTTTGATCTTTGTCGTCGCCGGTTCAGGCTCTGGCATGGCTTTCAACAAGCTCACTGAAAACGGAGCCACCACTCCTTCTGGTCTCGTAGCTGCTGCAGTGGCTCATGCCTTTGGACTCTTCGTCGCTGTCTCAGTTGGTGCCAACATCTCTGGTGGACACGTTAACCCTGCCGTCACTTTCGGTGCTTTCATTGGTGGTAACATCACTCTCCTCCGTGGTATCCTCTACTGGATTGCTCAGCTTCTCGGCTCCGTCGTCGCTTGCCTCATCCTTAAATTCGCCACCGGTGGCTTGGCTGTGCCGGCTTTTGGTCTCTCTGCTGGAGTAGGAGTGTTGAACGCTTTCGTTTTCGAGATCGTGATGACATTCGGGCTTGTTTACACCGTCTACGCTACAGCCATTGACCCCAAAAACGGGAGTCTTGGAACAATTGCTCCCATCGCAATCGGTTTCATTGTTGGAGCCAACATCTTAGCTGGAGGAGCTTTCTCTGGAGCCTCCATGAATCCCGCCGTGGCTTTCGGACCAGCGGTGGTGAGCTGGACATGGACCAACCACTGGGTCTACTGGGCCGGACCTCTCGTCGGCGGTGGAATCGCTGGACTCATCTACGAAGTTTTCTTCATCAACACCACACACGAGCAGCTCCCAACCACAGACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0006855 GO:0006950 GO:0006952 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009705 GO:0009941 GO:0012505 GO:0015204 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0015893 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0030104 GO:0031012 GO:0031090 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042221 GO:0042493 GO:0042592 GO:0042742 GO:0042807 GO:0042886 GO:0042887 GO:0042891 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043667 GO:0043668 GO:0043673 GO:0043674 GO:0044420 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048878 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0080170 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

251

Amino Acids

25.62

Weight (kDa)

6.02

Isoelectric Point (pI)

25.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	14 - 234	2e-79	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36830 AT3G26520
fragaria_vesca	FvH4_3g34940 FvH4_3g34940 FvH4_6g16770 FvH4_7g03120
malus_domestica	MD03G1100200.v1.1
prunus_persica	Prupe.6G085200_v2.0.a1 Prupe.7G125900_v2.0.a1
pyrus_communis	pycom03g08240 pycom11g09610 pycom12g10750
rosa_chinensis	RchiOBHm_Chr3g0470701 RchiOBHm_Chr5g0062791
rosa_laevigata	RLG00000024246 RLG00000035580
rosa_multiflora	Rmu_co8269841.1_g000001 Rmu_sc0002790.1_g000002 Rmu_sc0006168.1_g000020 Rmu_ssc0000472.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017830 Rroxscaffold_6G00410570
rosa_rugosa	Rorug03G0112300 Rorug05G0351600
rosa_samantha	Rh3AG161800 Rh3BG186400 Rh3CG176700 Rh3DG188800 Rh5AG412900 Rh5BG426800 Rh5CG450700 Rh5DG440700
rosa_wichuraiana	Rw0G004640 Rw5G038800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	227
AccB7I	CCANNNNNTGG	1 cut(s)	648
AccI	GTMKAC	2 cut(s)	477, 654
AciI	CCGC	4 cut(s)	65, 600, 620, 678
AcoI	YGGCCR	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	365
AfiI	CCNNNNNNNGG	5 cut(s)	398, 503, 504, 648, 674
AflIII	ACRYGT	1 cut(s)	247
AgeI	ACCGGT	1 cut(s)	374
AgsI	TTSAA	3 cut(s)	87, 133, 427
AhdI	GACNNNNNGTC	2 cut(s)	209, 671
AloI	GAACNNNNNNTCC	2 cut(s)	508, 540
AluBI	AGCT	7 cut(s)	139, 179, 331, 566, 575, 630, 736
AluI	AGCT	7 cut(s)	139, 179, 331, 566, 575, 630, 736
Alw26I	GTCTC	3 cut(s)	176, 223, 407
AlwNI	CAGNNNCTG	1 cut(s)	119
AoxI	GGCC	2 cut(s)	25, 660
ApeKI	GCWGC	3 cut(s)	179, 182, 733
ApoI	RAATTY	1 cut(s)	365
AsiGI	ACCGGT	1 cut(s)	374
Asp700I	GAANNNNTTC	1 cut(s)	431
AspS9I	GGNCC	4 cut(s)	614, 639, 660, 665
AsuHPI	GGTGA	1 cut(s)	637
AvaII	GGWCC	3 cut(s)	614, 639, 665
BanI	GGYRCC	1 cut(s)	227
BauI	CACGAG	1 cut(s)	728
BbvI	GCAGC	3 cut(s)	166, 169, 745
BccI	CCATC	1 cut(s)	536
BceAI	ACGGC	3 cut(s)	12, 245, 587
BciVI	GTATCC	1 cut(s)	320
BcoDI	GTCTC	3 cut(s)	176, 223, 407
BfmI	CTRYAG	2 cut(s)	183, 483
BfuI	GTATCC	1 cut(s)	320
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	4 cut(s)	66, 180, 183, 734
BlpI	GCTNAGC	1 cut(s)	327
BlsI	GCNGC	4 cut(s)	67, 181, 184, 735
Bme18I	GGWCC	3 cut(s)	614, 639, 665
BmeRI	GACNNNNNGTC	2 cut(s)	209, 671
BmgT120I	GGNCC	4 cut(s)	614, 639, 660, 665
BmiI	GGNNCC	5 cut(s)	154, 229, 340, 553, 586
BmrI	ACTGGG	2 cut(s)	658, 667
BmsI	GCATC	1 cut(s)	43
BmuI	ACTGGG	2 cut(s)	658, 667
BpmI	CTGGAG	3 cut(s)	432, 588, 603
Bpu1102I	GCTNAGC	1 cut(s)	327
BsaI	GGTCTC	2 cut(s)	176, 407
BsaJI	CCNNGG	2 cut(s)	304, 603
BsaWI	WCCGGW	1 cut(s)	374
BsaXI	ACNNNNNCTCC	4 cut(s)	405, 435, 508, 538
Bsc4I	CCNNNNNNNGG	5 cut(s)	398, 503, 504, 648, 674
Bse118I	RCCGGY	3 cut(s)	107, 374, 391
Bse1I	ACTGG	3 cut(s)	323, 653, 662
BseDI	CCNNGG	2 cut(s)	304, 603
BseGI	GGATG	1 cut(s)	357
BseLI	CCNNNNNNNGG	5 cut(s)	398, 503, 504, 648, 674
BseMII	CTCAG	3 cut(s)	66, 234, 341
BseNI	ACTGG	3 cut(s)	323, 653, 662
BseRI	GAGGAG	2 cut(s)	290, 585
BseXI	GCAGC	3 cut(s)	166, 169, 745
BshFI	GGCC	2 cut(s)	27, 662
BshNI	GGYRCC	1 cut(s)	227
BshTI	ACCGGT	1 cut(s)	374
BsiSI	CCGG	4 cut(s)	108, 375, 392, 663
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	5 cut(s)	398, 503, 504, 648, 674
BsmAI	GTCTC	3 cut(s)	176, 223, 407
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	2 cut(s)	27, 662
Bso31I	GGTCTC	2 cut(s)	176, 407
Bsp143I	GATC	3 cut(s)	6, 93, 444
Bsp1720I	GCTNAGC	1 cut(s)	327
BspACI	CCGC	4 cut(s)	65, 600, 620, 678
BspANI	GGCC	2 cut(s)	27, 662
BspCNI	CTCAG	3 cut(s)	67, 233, 340
BspLI	GGNNCC	5 cut(s)	154, 229, 340, 553, 586
BspMAI	CTGCAG	1 cut(s)	187
BspT107I	GGYRCC	1 cut(s)	227
BspTNI	GGTCTC	2 cut(s)	176, 407
BsrFI	RCCGGY	3 cut(s)	107, 374, 391
BsrI	ACTGG	3 cut(s)	323, 653, 662
BssAI	RCCGGY	3 cut(s)	107, 374, 391
BssECI	CCNNGG	2 cut(s)	304, 603
BssMI	GATC	3 cut(s)	6, 93, 444
BssSI	CACGAG	1 cut(s)	728
Bst2BI	CACGAG	1 cut(s)	728
Bst4CI	ACNGT	1 cut(s)	475
Bst6I	CTCTTC	1 cut(s)	212
BstC8I	GCNNGC	2 cut(s)	352, 393
BstDEI	CTNAG	4 cut(s)	75, 220, 327, 562
BstDSI	CCRYGG	2 cut(s)	304, 603
BstF5I	GGATG	1 cut(s)	357
BstKTI	GATC	3 cut(s)	9, 96, 447
BstMAI	GTCTC	3 cut(s)	176, 223, 407
BstMBI	GATC	3 cut(s)	6, 93, 444
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 71, 188, 392, 530, 572
BstSFI	CTRYAG	2 cut(s)	183, 483
BstV1I	GCAGC	3 cut(s)	166, 169, 745
BsuI	GTATCC	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	27, 662
BtgI	CCRYGG	2 cut(s)	304, 603
BtgZI	GCGATG	1 cut(s)	514
BtsCI	GGATG	1 cut(s)	357
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	3 cut(s)	141, 192, 646
Cac8I	GCNNGC	2 cut(s)	352, 393
CaiI	CAGNNNCTG	1 cut(s)	119
Cfr10I	RCCGGY	3 cut(s)	107, 374, 391
Cfr13I	GGNCC	4 cut(s)	614, 639, 660, 665
CspAI	ACCGGT	1 cut(s)	374
CviAII	CATG	4 cut(s)	124, 194, 592, 636
DdeI	CTNAG	4 cut(s)	75, 220, 327, 562
DpnI	GATC	3 cut(s)	8, 95, 446
DpnII	GATC	3 cut(s)	6, 93, 444
DriI	GACNNNNNGTC	2 cut(s)	209, 671
EaeI	YGGCCR	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	212
Eam1105I	GACNNNNNGTC	2 cut(s)	209, 671
EarI	CTCTTC	1 cut(s)	212
Eco31I	GGTCTC	2 cut(s)	176, 407
Eco47I	GGWCC	3 cut(s)	614, 639, 665
FaeI	CATG	4 cut(s)	127, 197, 595, 639
FaiI	YATR	4 cut(s)	125, 195, 593, 637
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	4 cut(s)	123, 193, 591, 635
FauI	CCCGC	1 cut(s)	607
FblI	GTMKAC	2 cut(s)	477, 654
Fnu4HI	GCNGC	4 cut(s)	66, 180, 183, 734
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	4 cut(s)	66, 180, 183, 734
GluI	GCNGC	4 cut(s)	66, 180, 183, 734
GsuI	CTGGAG	3 cut(s)	432, 588, 603
HaeIII	GGCC	2 cut(s)	27, 662
HapII	CCGG	4 cut(s)	108, 375, 392, 663
Hin1II	CATG	4 cut(s)	127, 197, 595, 639
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	5 cut(s)	204, 508, 595, 684, 693
HpaI	GTTAAC	1 cut(s)	253
HpaII	CCGG	4 cut(s)	108, 375, 392, 663
HphI	GGTGA	1 cut(s)	637
Hpy166II	GTNNAC	5 cut(s)	245, 253, 469, 478, 655
Hpy188I	TCNGA	2 cut(s)	11, 614
Hpy188III	TCNNGA	5 cut(s)	32, 50, 442, 448, 582
Hpy8I	GTNNAC	5 cut(s)	245, 253, 469, 478, 655
Hpy99I	CGWCG	5 cut(s)	107, 215, 347, 350, 677
HpyAV	CCTTC	1 cut(s)	174
HpyCH4III	ACNGT	1 cut(s)	475
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	1 cut(s)	185
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 71, 188, 392, 530, 572
HpyF3I	CTNAG	4 cut(s)	75, 220, 327, 562
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	4 cut(s)	127, 197, 595, 639
KroI	GCCGGC	1 cut(s)	391
KroNI	GCCGGC	1 cut(s)	393
KspAI	GTTAAC	1 cut(s)	253
Kzo9I	GATC	3 cut(s)	6, 93, 444
LmnI	GCTCC	7 cut(s)	152, 344, 529, 551, 572, 584, 741
Lsp1109I	GCAGC	3 cut(s)	166, 169, 745
LweI	GCATC	1 cut(s)	43
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	2 cut(s)	262, 287
MalI	GATC	3 cut(s)	8, 95, 446
MboI	GATC	3 cut(s)	6, 93, 444
MboII	GAAGA	2 cut(s)	199, 703
MfeI	CAATTG	1 cut(s)	519
MluCI	AATT	2 cut(s)	365, 519
MlyI	GAGTC	3 cut(s)	198, 517, 687
MmeI	TCCRAC	1 cut(s)	529
MnlI	CCTC	6 cut(s)	311, 323, 365, 563, 598, 678
MroNI	GCCGGC	1 cut(s)	391
MroXI	GAANNNNTTC	1 cut(s)	431
MseI	TTAA	3 cut(s)	59, 252, 363
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	4 cut(s)	108, 375, 392, 663
MunI	CAATTG	1 cut(s)	519
MwoI	GCNNNNNNNGC	6 cut(s)	62, 71, 188, 392, 530, 572
NaeI	GCCGGC	1 cut(s)	393
NdeII	GATC	3 cut(s)	6, 93, 444
NgoMIV	GCCGGC	1 cut(s)	391
NlaIII	CATG	4 cut(s)	127, 197, 595, 639
NlaIV	GGNNCC	5 cut(s)	154, 229, 340, 553, 586
NmeAIII	GCCGAG	1 cut(s)	315
NmuCI	GTSAC	1 cut(s)	262
PcsI	WCGNNNNNNNCGW	1 cut(s)	342
PdiI	GCCGGC	1 cut(s)	393
PdmI	GAANNNNTTC	1 cut(s)	431
PfeI	GAWTC	2 cut(s)	595, 684
PflMI	CCANNNNNTGG	1 cut(s)	648
PinAI	ACCGGT	1 cut(s)	374
PkrI	GCNGC	4 cut(s)	67, 181, 184, 735
PleI	GAGTC	3 cut(s)	198, 516, 687
PpsI	GAGTC	3 cut(s)	198, 516, 687
PspN4I	GGNNCC	5 cut(s)	154, 229, 340, 553, 586
PspPI	GGNCC	4 cut(s)	614, 639, 660, 665
PstI	CTGCAG	1 cut(s)	187
PstNI	CAGNNNCTG	1 cut(s)	119
SaqAI	TTAA	3 cut(s)	59, 252, 363
SatI	GCNGC	4 cut(s)	66, 180, 183, 734
Sau3AI	GATC	3 cut(s)	6, 93, 444
Sau96I	GGNCC	4 cut(s)	614, 639, 660, 665
SchI	GAGTC	3 cut(s)	198, 517, 687
SetI	ASST	9 cut(s)	141, 181, 252, 333, 568, 577, 632, 670, 738
SfaNI	GCATC	1 cut(s)	43
SfcI	CTRYAG	2 cut(s)	183, 483
SgrAI	CRCCGGYG	1 cut(s)	374
SinI	GGWCC	3 cut(s)	614, 639, 665
Sse9I	AATT	2 cut(s)	365, 519
SsiI	CCGC	4 cut(s)	65, 600, 620, 678
TaaI	ACNGT	1 cut(s)	475
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	441
TasI	AATT	2 cut(s)	365, 519
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	2 cut(s)	595, 684
Tru1I	TTAA	3 cut(s)	59, 252, 363
Tru9I	TTAA	3 cut(s)	59, 252, 363
TscAI	CASTG	3 cut(s)	148, 192, 653
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	3 cut(s)	179, 182, 733
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	6 cut(s)	51, 70, 268, 532, 608, 703
TspGWI	ACGGA	3 cut(s)	165, 293, 331
TspRI	CASTG	3 cut(s)	148, 192, 653
Van91I	CCANNNNNTGG	1 cut(s)	648
VpaK11BI	GGWCC	3 cut(s)	614, 639, 665
XapI	RAATTY	1 cut(s)	365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379
XmiI	GTMKAC	2 cut(s)	477, 654
XmnI	GAANNNNTTC	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.