Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0003756

Physical Location & Seq

Genomic Coordinates Reverse (-)

6645420 .. 6646594

Gene Structure 1175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g08240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCGATCAACAGAATTGCAGTGGGAAGCGCATCTGAGTTTGGTCAGGCTGATGCTCTGAAAGCAGCTCTTGCTGAGTTCATCTCAGTCCTCATCTTTGTTTTTGCTGGTGAAGGGTCTGGCATGGCCTTCAACAAGCTAACTGACAATGCATCAACCACACCCGCCGGCCTTGTAGCCGCTGCCCTAGCGCACGCCTTCGCCCTTTTTGTCGCCGTCTCAATCGCCGCAAACATCTCCGGCGGGCATGTCAACCCTGCCGTCACATTCGGAGCCTTCATTGGTGGCCACATCACTTTCGTCAGGACTATCTTGTACTGGATTGCCCAGCTGATCGGAGCCGTCGTTGCTTGCTTGCTCCTCAAGTTTGCGACCGGCGGATTGGAAACATCTGCTTTCTCCCTATCATCTGGCGTCAGTGTATGGAACGCTCTGGTCCTCGAAATTGTGATCACCTTCGGCTTGGTTTACACCGTGTACGCAACCGCCGTGGACCCCAAGAAGGGCAGCATCGGCACCATTGCACCCATTGCCATCGGTTTCATTGTTGGTGCCAACATCTTGGTTGCCGGTGCCTTTGACGGTGCATCCATGAACCCCGCAGTCTCCTTCGGCCCAGCTGTCGTCAGCTGGACATGGGACAACCACTGGGTCTACTGGCTCGGACCATTTATCGGCGCTGCCATTGCCGCCGTCGTCTACGAGCTCATCTTCATCGGCCCAGACACCCACGAGCAGCTCCCTACCGCAGACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0009705 GO:0015204 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042807 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

253

Amino Acids

25.97

Weight (kDa)

4.96

Isoelectric Point (pI)

21.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	16 - 234	2.1e-78	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36830 AT3G26520
fragaria_vesca	FvH4_3g34940 FvH4_3g34940 FvH4_6g16770 FvH4_7g03120
malus_domestica	MD03G1100200.v1.1
prunus_persica	Prupe.6G085200_v2.0.a1 Prupe.7G125900_v2.0.a1
pyrus_communis	pycom03g08240 pycom11g09610 pycom12g10750
rosa_chinensis	RchiOBHm_Chr3g0470701 RchiOBHm_Chr5g0062791
rosa_laevigata	RLG00000024246 RLG00000035580
rosa_multiflora	Rmu_co8269841.1_g000001 Rmu_sc0002790.1_g000002 Rmu_sc0006168.1_g000020 Rmu_ssc0000472.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017830 Rroxscaffold_6G00410570
rosa_rugosa	Rorug03G0112300 Rorug05G0351600
rosa_samantha	Rh3AG161800 Rh3BG186400 Rh3CG176700 Rh3DG188800 Rh5AG412900 Rh5BG426800 Rh5CG450700 Rh5DG440700
rosa_wichuraiana	Rw0G004640 Rw5G038800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	515, 551, 572
AccI	GTMKAC	2 cut(s)	654, 699
AciI	CCGC	9 cut(s)	165, 180, 228, 243, 378, 486, 600, 690, 747
AcoI	YGGCCR	1 cut(s)	286
AcyI	GRCGYC	1 cut(s)	414
AfaI	GTAC	2 cut(s)	317, 479
AfiI	CCNNNNNNNGG	3 cut(s)	502, 503, 674
AgsI	TTSAA	1 cut(s)	133
AluBI	AGCT	7 cut(s)	68, 139, 331, 620, 630, 706, 739
AluI	AGCT	7 cut(s)	68, 139, 331, 620, 630, 706, 739
Alw21I	GWGCWC	1 cut(s)	708
Alw26I	GTCTC	2 cut(s)	223, 610
AoxI	GGCC	5 cut(s)	126, 169, 286, 613, 718
ApeKI	GCWGC	5 cut(s)	65, 182, 507, 680, 736
AspLEI	GCGC	3 cut(s)	32, 193, 680
AspS9I	GGNCC	5 cut(s)	436, 493, 614, 665, 719
AsuHPI	GGTGA	2 cut(s)	122, 445
AvaII	GGWCC	3 cut(s)	436, 493, 665
BalI	TGGCCA	1 cut(s)	288
BanI	GGYRCC	3 cut(s)	515, 551, 572
BanII	GRGCYC	1 cut(s)	708
BauI	CACGAG	1 cut(s)	731
Bbv12I	GWGCWC	1 cut(s)	708
BbvI	GCAGC	5 cut(s)	77, 169, 519, 667, 748
BccI	CCATC	1 cut(s)	542
BceAI	ACGGC	5 cut(s)	200, 245, 326, 473, 677
BclI	TGATCA	1 cut(s)	450
BcoDI	GTCTC	2 cut(s)	223, 610
BfaI	CTAG	1 cut(s)	188
BfoI	RGCGCY	1 cut(s)	681
BisI	GCNGC	8 cut(s)	66, 180, 183, 228, 508, 681, 690, 737
BlsI	GCNGC	8 cut(s)	67, 181, 184, 229, 509, 682, 691, 738
Bme18I	GGWCC	3 cut(s)	436, 493, 665
BmgT120I	GGNCC	5 cut(s)	436, 493, 614, 665, 719
BmiI	GGNNCC	6 cut(s)	274, 340, 495, 517, 553, 574
BmrI	ACTGGG	1 cut(s)	658
BmsI	GCATC	5 cut(s)	41, 43, 161, 519, 596
BmuI	ACTGGG	1 cut(s)	658
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpuEI	CTTGAG	1 cut(s)	347
BsaHI	GRCGYC	1 cut(s)	414
BsaJI	CCNNGG	1 cut(s)	489
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	3 cut(s)	502, 503, 674
Bse118I	RCCGGY	3 cut(s)	167, 374, 569
Bse1I	ACTGG	3 cut(s)	323, 653, 662
Bse3DI	GCAATG	3 cut(s)	519, 528, 684
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	1 cut(s)	587
BseLI	CCNNNNNNNGG	3 cut(s)	502, 503, 674
BseMI	GCAATG	3 cut(s)	519, 528, 684
BseMII	CTCAG	3 cut(s)	27, 66, 99
BseNI	ACTGG	3 cut(s)	323, 653, 662
BseRI	GAGGAG	1 cut(s)	350
BseXI	GCAGC	5 cut(s)	77, 169, 519, 667, 748
BseYI	CCCAGC	2 cut(s)	327, 616
Bsh1285I	CGRYCG	1 cut(s)	375
BshFI	GGCC	5 cut(s)	128, 171, 288, 615, 720
BshNI	GGYRCC	3 cut(s)	515, 551, 572
BsiEI	CGRYCG	1 cut(s)	375
BsiHKAI	GWGCWC	1 cut(s)	708
BsiSI	CCGG	4 cut(s)	168, 240, 375, 570
BslFI	GGGAC	1 cut(s)	653
BslI	CCNNNNNNNGG	3 cut(s)	502, 503, 674
BsmAI	GTCTC	2 cut(s)	223, 610
BsmBI	CGTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	653
BsnI	GGCC	5 cut(s)	128, 171, 288, 615, 720
Bsp1286I	GDGCHC	1 cut(s)	708
Bsp143I	GATC	3 cut(s)	6, 333, 450
BspACI	CCGC	9 cut(s)	165, 180, 228, 243, 378, 486, 600, 690, 747
BspANI	GGCC	5 cut(s)	128, 171, 288, 615, 720
BspCNI	CTCAG	3 cut(s)	28, 67, 98
BspLI	GGNNCC	6 cut(s)	274, 340, 495, 517, 553, 574
BspT107I	GGYRCC	3 cut(s)	515, 551, 572
BsrDI	GCAATG	3 cut(s)	519, 528, 684
BsrFI	RCCGGY	3 cut(s)	167, 374, 569
BsrI	ACTGG	3 cut(s)	323, 653, 662
BssAI	RCCGGY	3 cut(s)	167, 374, 569
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	3 cut(s)	6, 333, 450
BssNI	GRCGYC	1 cut(s)	414
BssSI	CACGAG	1 cut(s)	731
Bst2BI	CACGAG	1 cut(s)	731
Bst4CI	ACNGT	2 cut(s)	475, 584
BstACI	GRCGYC	1 cut(s)	414
BstAPI	GCANNNNNTGC	2 cut(s)	71, 530
BstC8I	GCNNGC	5 cut(s)	169, 195, 245, 352, 356
BstDEI	CTNAG	3 cut(s)	36, 75, 85
BstDSI	CCRYGG	1 cut(s)	489
BstF5I	GGATG	1 cut(s)	587
BstH2I	RGCGCY	1 cut(s)	681
BstHHI	GCGC	3 cut(s)	32, 193, 680
BstKTI	GATC	3 cut(s)	9, 336, 453
BstMAI	GTCTC	2 cut(s)	223, 610
BstMBI	GATC	3 cut(s)	6, 333, 450
BstMCI	CGRYCG	1 cut(s)	375
BstMWI	GCNNNNNNNGC	8 cut(s)	62, 71, 188, 347, 513, 530, 686, 689
BstNSI	RCATGY	1 cut(s)	251
BstV1I	GCAGC	5 cut(s)	77, 169, 519, 667, 748
BstXI	CCANNNNNNTGG	1 cut(s)	562
BsuRI	GGCC	5 cut(s)	128, 171, 288, 615, 720
BtgI	CCRYGG	1 cut(s)	489
BtsCI	GGATG	1 cut(s)	587
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	3 cut(s)	27, 424, 646
Cac8I	GCNNGC	5 cut(s)	169, 195, 245, 352, 356
CfoI	GCGC	3 cut(s)	32, 193, 680
Cfr10I	RCCGGY	3 cut(s)	167, 374, 569
Cfr13I	GGNCC	5 cut(s)	436, 493, 614, 665, 719
CseI	GACGC	1 cut(s)	403
Csp6I	GTAC	2 cut(s)	316, 478
CspCI	CAANNNNNGTGG	2 cut(s)	471, 506
CviAII	CATG	4 cut(s)	124, 248, 592, 636
CviQI	GTAC	2 cut(s)	316, 478
DdeI	CTNAG	3 cut(s)	36, 75, 85
DpnI	GATC	3 cut(s)	8, 335, 452
DpnII	GATC	3 cut(s)	6, 333, 450
EaeI	YGGCCR	1 cut(s)	286
EciI	GGCGGA	1 cut(s)	393
Ecl136II	GAGCTC	1 cut(s)	706
Eco24I	GRGCYC	1 cut(s)	708
Eco47I	GGWCC	3 cut(s)	436, 493, 665
Eco53kI	GAGCTC	1 cut(s)	706
EcoICRI	GAGCTC	1 cut(s)	706
EcoT22I	ATGCAT	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	708
Esp3I	CGTCTC	1 cut(s)	223
FaeI	CATG	4 cut(s)	127, 251, 595, 639
FaiI	YATR	5 cut(s)	125, 249, 424, 593, 637
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FaqI	GGGAC	1 cut(s)	653
FatI	CATG	4 cut(s)	123, 247, 591, 635
FauI	CCCGC	3 cut(s)	172, 236, 607
FbaI	TGATCA	1 cut(s)	450
FblI	GTMKAC	2 cut(s)	654, 699
Fnu4HI	GCNGC	8 cut(s)	66, 180, 183, 228, 508, 681, 690, 737
FokI	GGATG	1 cut(s)	574
FriOI	GRGCYC	1 cut(s)	708
Fsp4HI	GCNGC	8 cut(s)	66, 180, 183, 228, 508, 681, 690, 737
FspBI	CTAG	1 cut(s)	188
GlaI	GCGC	3 cut(s)	31, 192, 679
GluI	GCNGC	8 cut(s)	66, 180, 183, 228, 508, 681, 690, 737
GsaI	CCCAGC	2 cut(s)	331, 620
HaeII	RGCGCY	1 cut(s)	681
HaeIII	GGCC	5 cut(s)	128, 171, 288, 615, 720
HapII	CCGG	4 cut(s)	168, 240, 375, 570
HgaI	GACGC	1 cut(s)	403
HhaI	GCGC	3 cut(s)	32, 193, 680
Hin1I	GRCGYC	1 cut(s)	414
Hin1II	CATG	4 cut(s)	127, 251, 595, 639
Hin6I	GCGC	3 cut(s)	30, 191, 678
HinP1I	GCGC	3 cut(s)	30, 191, 678
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HpaII	CCGG	4 cut(s)	168, 240, 375, 570
HphI	GGTGA	2 cut(s)	122, 445
Hpy166II	GTNNAC	6 cut(s)	253, 469, 478, 493, 655, 700
Hpy188I	TCNGA	5 cut(s)	37, 60, 272, 338, 665
Hpy188III	TCNNGA	1 cut(s)	304
Hpy8I	GTNNAC	6 cut(s)	253, 469, 478, 493, 655, 700
Hpy99I	CGWCG	2 cut(s)	347, 698
HpyAV	CCTTC	7 cut(s)	107, 139, 208, 286, 466, 496, 619
HpyCH4III	ACNGT	2 cut(s)	475, 584
HpyCH4V	TGCA	4 cut(s)	20, 152, 524, 587
HpyF10VI	GCNNNNNNNGC	8 cut(s)	62, 71, 188, 347, 513, 530, 686, 689
HpyF3I	CTNAG	3 cut(s)	36, 75, 85
Hsp92I	GRCGYC	1 cut(s)	414
Hsp92II	CATG	4 cut(s)	127, 251, 595, 639
HspAI	GCGC	3 cut(s)	30, 191, 678
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
Ksp22I	TGATCA	1 cut(s)	450
Kzo9I	GATC	3 cut(s)	6, 333, 450
LmnI	GCTCC	4 cut(s)	272, 338, 363, 744
Lsp1109I	GCAGC	5 cut(s)	77, 169, 519, 667, 748
LweI	GCATC	5 cut(s)	41, 43, 161, 519, 596
MaeI	CTAG	1 cut(s)	188
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	3 cut(s)	8, 335, 452
MboI	GATC	3 cut(s)	6, 333, 450
MboII	GAAGA	1 cut(s)	703
MhlI	GDGCHC	1 cut(s)	708
MlsI	TGGCCA	1 cut(s)	288
MluCI	AATT	2 cut(s)	15, 444
MluNI	TGGCCA	1 cut(s)	288
MnlI	CCTC	3 cut(s)	101, 371, 449
Mox20I	TGGCCA	1 cut(s)	288
Mph1103I	ATGCAT	1 cut(s)	154
MroNI	GCCGGC	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	288
Msp20I	TGGCCA	1 cut(s)	288
MspA1I	CMGCKG	4 cut(s)	182, 331, 620, 630
MspI	CCGG	4 cut(s)	168, 240, 375, 570
MwoI	GCNNNNNNNGC	8 cut(s)	62, 71, 188, 347, 513, 530, 686, 689
NaeI	GCCGGC	1 cut(s)	169
NdeII	GATC	3 cut(s)	6, 333, 450
NgoMIV	GCCGGC	1 cut(s)	167
NlaIII	CATG	4 cut(s)	127, 251, 595, 639
NlaIV	GGNNCC	6 cut(s)	274, 340, 495, 517, 553, 574
NmuCI	GTSAC	1 cut(s)	262
NsiI	ATGCAT	1 cut(s)	154
NspI	RCATGY	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	2 cut(s)	342, 486
PdiI	GCCGGC	1 cut(s)	169
PkrI	GCNGC	8 cut(s)	67, 181, 184, 229, 509, 682, 691, 738
Psp124BI	GAGCTC	1 cut(s)	708
PspFI	CCCAGC	2 cut(s)	327, 616
PspN4I	GGNNCC	6 cut(s)	274, 340, 495, 517, 553, 574
PspPI	GGNCC	5 cut(s)	436, 493, 614, 665, 719
PvuII	CAGCTG	3 cut(s)	331, 620, 630
RsaI	GTAC	2 cut(s)	317, 479
RsaNI	GTAC	2 cut(s)	316, 478
SacI	GAGCTC	1 cut(s)	708
SatI	GCNGC	8 cut(s)	66, 180, 183, 228, 508, 681, 690, 737
Sau3AI	GATC	3 cut(s)	6, 333, 450
Sau96I	GGNCC	5 cut(s)	436, 493, 614, 665, 719
SduI	GDGCHC	1 cut(s)	708
SetI	ASST	8 cut(s)	70, 141, 333, 458, 622, 632, 708, 741
SfaNI	GCATC	5 cut(s)	41, 43, 161, 519, 596
SinI	GGWCC	3 cut(s)	436, 493, 665
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	2 cut(s)	15, 444
SsiI	CCGC	9 cut(s)	165, 180, 228, 243, 378, 486, 600, 690, 747
SspMI	CTAG	1 cut(s)	188
SstI	GAGCTC	1 cut(s)	708
TaaI	ACNGT	2 cut(s)	475, 584
TaqI	TCGA	1 cut(s)	441
TasI	AATT	2 cut(s)	15, 444
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	3 cut(s)	182, 230, 692
TscAI	CASTG	3 cut(s)	27, 424, 653
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	5 cut(s)	65, 182, 507, 680, 736
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	5 cut(s)	70, 268, 532, 608, 703
TspRI	CASTG	3 cut(s)	27, 424, 653
VpaK11BI	GGWCC	3 cut(s)	436, 493, 665
XceI	RCATGY	1 cut(s)	251
XmiI	GTMKAC	2 cut(s)	654, 699
XspI	CTAG	1 cut(s)	188
Zsp2I	ATGCAT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.