Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003756

Physical Location & Seq

Genomic Coordinates Reverse (-)

5738025 .. 5740160

Gene Structure 2136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G085200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGCCTGTCTCTAGAATTGCAATTGGAAACCCAGCTGAGTTTGGGCAGCCAGATGCTCTCAAAGCAGCTCTTGCTGAATTCATCTCAGTTCTCATTTTTGTTTTTGCTGGTGAAGGCTCTGGCATGGCTTTCAGCAAGCTAACTGACGGTGCTTCAACGACACCGGCTGGCCTTATAGCCGCTGCCTTGGCCCATGCCTTTGCACTTTTCGTGGCGGTTTCCATTGCAGCAAACATCTCCGGCGGTCATGTCAACCCTGCTGTCACATTTGGTGCCTTTATTGGCGGCAACATCTCTCTCGTCAGGTCTGTCTTGTACTGGATTGCCCAGTTGCTTGGAGCCGTGATTGCTTGCTTGCTTCTCAGGTTTGCAACCGGTGGATTGGAAACATCTGCTTTCTCCCTATCAAGCGGTGTGAGTGTATGGAATGCTGTGGTGCTGGAGATTGTGATCACCTTTGGTCTGGTTTACACAGTTTATGCCACAGCCCTTGACCCAAAGAAGGGCAACATAGGCATCATTGCCCCCATTGCAATTGGTTTCATTGTTGGTGCCAACATCTTGGTTGCTGGTGCCTTTGATGGTGCATCCATGAACCCGGCAGTCTCCTTCGGACCCGCTGTCGTCAGCTGGACATGGGACAACCACTGGGTCTACTGGCTCGGCCCATTCATCGGCGCTGCCATTGCTGCCCTTGTCTACGATCTCATCTACATCACCCCAGACACACATGAGCAGCTCCCCACCACAGACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0009705 GO:0015204 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042807 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

253

Amino Acids

26.03

Weight (kDa)

4.78

Isoelectric Point (pI)

28.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36830 AT3G26520
fragaria_vesca	FvH4_3g34940 FvH4_3g34940 FvH4_6g16770 FvH4_7g03120
malus_domestica	MD03G1100200.v1.1
prunus_persica	Prupe.6G085200_v2.0.a1 Prupe.7G125900_v2.0.a1
pyrus_communis	pycom03g08240 pycom11g09610 pycom12g10750
rosa_chinensis	RchiOBHm_Chr3g0470701 RchiOBHm_Chr5g0062791
rosa_laevigata	RLG00000024246 RLG00000035580
rosa_multiflora	Rmu_co8269841.1_g000001 Rmu_sc0002790.1_g000002 Rmu_sc0006168.1_g000020 Rmu_ssc0000472.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017830 Rroxscaffold_6G00410570
rosa_rugosa	Rorug03G0112300 Rorug05G0351600
rosa_samantha	Rh3AG161800 Rh3BG186400 Rh3CG176700 Rh3DG188800 Rh5AG412900 Rh5BG426800 Rh5CG450700 Rh5DG440700
rosa_wichuraiana	Rw0G004640 Rw5G038800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	272, 551, 572
AccI	GTMKAC	2 cut(s)	654, 699
AciI	CCGC	6 cut(s)	180, 215, 243, 285, 411, 618
AcsI	RAATTY	1 cut(s)	77
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	3 cut(s)	502, 503, 674
AgeI	ACCGGT	1 cut(s)	374
AgsI	TTSAA	1 cut(s)	156
AhdI	GACNNNNNGTC	1 cut(s)	620
AluBI	AGCT	5 cut(s)	35, 68, 139, 630, 739
AluI	AGCT	5 cut(s)	35, 68, 139, 630, 739
Alw26I	GTCTC	2 cut(s)	13, 610
AoxI	GGCC	3 cut(s)	169, 189, 664
ApeKI	GCWGC	7 cut(s)	46, 65, 182, 227, 680, 689, 736
ApoI	RAATTY	1 cut(s)	77
AsiGI	ACCGGT	1 cut(s)	374
AspLEI	GCGC	1 cut(s)	680
AspS9I	GGNCC	3 cut(s)	190, 614, 665
AsuC2I	CCSGG	1 cut(s)	599
AsuHPI	GGTGA	3 cut(s)	122, 445, 709
AvaII	GGWCC	1 cut(s)	614
BanI	GGYRCC	3 cut(s)	272, 551, 572
BbvI	GCAGC	7 cut(s)	58, 77, 169, 239, 667, 676, 748
BccI	CCATC	1 cut(s)	575
BceAI	ACGGC	1 cut(s)	326
BclI	TGATCA	1 cut(s)	450
BcnI	CCSGG	1 cut(s)	599
BcoDI	GTCTC	2 cut(s)	13, 610
BfaI	CTAG	1 cut(s)	12
BfoI	RGCGCY	1 cut(s)	681
BisI	GCNGC	9 cut(s)	47, 66, 180, 183, 228, 286, 681, 690, 737
BlsI	GCNGC	9 cut(s)	48, 67, 181, 184, 229, 287, 682, 691, 738
Bme1390I	CCNGG	1 cut(s)	599
Bme18I	GGWCC	1 cut(s)	614
BmeRI	GACNNNNNGTC	1 cut(s)	620
BmgT120I	GGNCC	3 cut(s)	190, 614, 665
BmiI	GGNNCC	5 cut(s)	274, 340, 553, 574, 616
BmrFI	CCNGG	1 cut(s)	599
BmrI	ACTGGG	2 cut(s)	322, 658
BmsI	GCATC	3 cut(s)	43, 525, 596
BmuI	ACTGGG	2 cut(s)	322, 658
BpmI	CTGGAG	1 cut(s)	461
BpuMI	CCSGG	1 cut(s)	599
BsaBI	GATNNNNATC	1 cut(s)	449
BsaJI	CCNNGG	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	3 cut(s)	502, 503, 674
Bse118I	RCCGGY	2 cut(s)	163, 374
Bse1I	ACTGG	4 cut(s)	323, 328, 653, 662
Bse3DI	GCAATG	4 cut(s)	222, 519, 528, 684
Bse8I	GATNNNNATC	1 cut(s)	449
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	1 cut(s)	587
BseJI	GATNNNNATC	1 cut(s)	449
BseLI	CCNNNNNNNGG	3 cut(s)	502, 503, 674
BseMI	GCAATG	4 cut(s)	222, 519, 528, 684
BseMII	CTCAG	3 cut(s)	27, 99, 376
BseNI	ACTGG	4 cut(s)	323, 328, 653, 662
BseXI	GCAGC	7 cut(s)	58, 77, 169, 239, 667, 676, 748
BseYI	CCCAGC	1 cut(s)	31
BshFI	GGCC	3 cut(s)	171, 191, 666
BshNI	GGYRCC	3 cut(s)	272, 551, 572
BshTI	ACCGGT	1 cut(s)	374
BsiSI	CCGG	4 cut(s)	164, 240, 375, 599
BslFI	GGGAC	1 cut(s)	653
BslI	CCNNNNNNNGG	3 cut(s)	502, 503, 674
BsmAI	GTCTC	2 cut(s)	13, 610
BsmFI	GGGAC	1 cut(s)	653
BsmI	GAATGC	1 cut(s)	433
BsnI	GGCC	3 cut(s)	171, 191, 666
Bsp143I	GATC	2 cut(s)	450, 703
BspACI	CCGC	6 cut(s)	180, 215, 243, 285, 411, 618
BspANI	GGCC	3 cut(s)	171, 191, 666
BspCNI	CTCAG	3 cut(s)	28, 98, 375
BspLI	GGNNCC	5 cut(s)	274, 340, 553, 574, 616
BspT107I	GGYRCC	3 cut(s)	272, 551, 572
BsrDI	GCAATG	4 cut(s)	222, 519, 528, 684
BsrFI	RCCGGY	2 cut(s)	163, 374
BsrI	ACTGG	4 cut(s)	323, 328, 653, 662
BssAI	RCCGGY	2 cut(s)	163, 374
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	2 cut(s)	450, 703
BssT1I	CCWWGG	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	149, 475
BstAPI	GCANNNNNTGC	1 cut(s)	71
BstC8I	GCNNGC	4 cut(s)	137, 169, 352, 356
BstDEI	CTNAG	3 cut(s)	36, 85, 362
BstF5I	GGATG	1 cut(s)	587
BstH2I	RGCGCY	1 cut(s)	681
BstHHI	GCGC	1 cut(s)	680
BstKTI	GATC	2 cut(s)	453, 706
BstMAI	GTCTC	2 cut(s)	13, 610
BstMBI	GATC	2 cut(s)	450, 703
BstMWI	GCNNNNNNNGC	8 cut(s)	62, 71, 188, 347, 513, 530, 686, 689
BstSCI	CCNGG	1 cut(s)	597
BstV1I	GCAGC	7 cut(s)	58, 77, 169, 239, 667, 676, 748
BstXI	CCANNNNNNTGG	2 cut(s)	335, 562
BsuRI	GGCC	3 cut(s)	171, 191, 666
BtsCI	GGATG	1 cut(s)	587
BtsIMutI	CAGTG	1 cut(s)	646
Cac8I	GCNNGC	4 cut(s)	137, 169, 352, 356
CfoI	GCGC	1 cut(s)	680
Cfr10I	RCCGGY	2 cut(s)	163, 374
Cfr13I	GGNCC	3 cut(s)	190, 614, 665
Csp6I	GTAC	1 cut(s)	316
CspAI	ACCGGT	1 cut(s)	374
CspCI	CAANNNNNGTGG	2 cut(s)	472, 507
CviAII	CATG	6 cut(s)	124, 194, 248, 592, 636, 731
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	3 cut(s)	36, 85, 362
DpnI	GATC	2 cut(s)	452, 705
DpnII	GATC	2 cut(s)	450, 703
DriI	GACNNNNNGTC	1 cut(s)	620
Eam1105I	GACNNNNNGTC	1 cut(s)	620
Eco130I	CCWWGG	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	614
EcoRI	GAATTC	1 cut(s)	77
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	6 cut(s)	127, 197, 251, 595, 639, 734
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FaqI	GGGAC	1 cut(s)	653
FatI	CATG	6 cut(s)	123, 193, 247, 591, 635, 730
FauI	CCCGC	1 cut(s)	625
FbaI	TGATCA	1 cut(s)	450
FblI	GTMKAC	2 cut(s)	654, 699
Fnu4HI	GCNGC	9 cut(s)	47, 66, 180, 183, 228, 286, 681, 690, 737
FokI	GGATG	1 cut(s)	574
Fsp4HI	GCNGC	9 cut(s)	47, 66, 180, 183, 228, 286, 681, 690, 737
FspBI	CTAG	1 cut(s)	12
GlaI	GCGC	1 cut(s)	679
GluI	GCNGC	9 cut(s)	47, 66, 180, 183, 228, 286, 681, 690, 737
GsaI	CCCAGC	1 cut(s)	35
GsuI	CTGGAG	1 cut(s)	461
HaeII	RGCGCY	1 cut(s)	681
HaeIII	GGCC	3 cut(s)	171, 191, 666
HapII	CCGG	4 cut(s)	164, 240, 375, 599
HhaI	GCGC	1 cut(s)	680
Hin1II	CATG	6 cut(s)	127, 197, 251, 595, 639, 734
Hin6I	GCGC	1 cut(s)	678
HinP1I	GCGC	1 cut(s)	678
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HpaII	CCGG	4 cut(s)	164, 240, 375, 599
HphI	GGTGA	3 cut(s)	122, 445, 709
Hpy166II	GTNNAC	4 cut(s)	253, 469, 655, 700
Hpy188I	TCNGA	1 cut(s)	614
Hpy188III	TCNNGA	1 cut(s)	12
Hpy8I	GTNNAC	4 cut(s)	253, 469, 655, 700
HpyAV	CCTTC	3 cut(s)	107, 496, 619
HpyCH4III	ACNGT	2 cut(s)	149, 475
HpyCH4V	TGCA	6 cut(s)	20, 203, 227, 371, 533, 587
HpyF10VI	GCNNNNNNNGC	8 cut(s)	62, 71, 188, 347, 513, 530, 686, 689
HpyF3I	CTNAG	3 cut(s)	36, 85, 362
Hsp92II	CATG	6 cut(s)	127, 197, 251, 595, 639, 734
HspAI	GCGC	1 cut(s)	678
Ksp22I	TGATCA	1 cut(s)	450
Kzo9I	GATC	2 cut(s)	450, 703
LmnI	GCTCC	2 cut(s)	338, 744
Lsp1109I	GCAGC	7 cut(s)	58, 77, 169, 239, 667, 676, 748
LweI	GCATC	3 cut(s)	43, 525, 596
MaeI	CTAG	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	2 cut(s)	452, 705
MboI	GATC	2 cut(s)	450, 703
MfeI	CAATTG	2 cut(s)	21, 534
MluCI	AATT	4 cut(s)	15, 21, 77, 534
MspA1I	CMGCKG	4 cut(s)	35, 182, 620, 630
MspI	CCGG	4 cut(s)	164, 240, 375, 599
MspR9I	CCNGG	1 cut(s)	599
MunI	CAATTG	2 cut(s)	21, 534
Mva1269I	GAATGC	1 cut(s)	433
MwoI	GCNNNNNNNGC	8 cut(s)	62, 71, 188, 347, 513, 530, 686, 689
NciI	CCSGG	1 cut(s)	599
NdeII	GATC	2 cut(s)	450, 703
NlaIII	CATG	6 cut(s)	127, 197, 251, 595, 639, 734
NlaIV	GGNNCC	5 cut(s)	274, 340, 553, 574, 616
NmeAIII	GCCGAG	1 cut(s)	642
NmuCI	GTSAC	1 cut(s)	262
PctI	GAATGC	1 cut(s)	433
PinAI	ACCGGT	1 cut(s)	374
PkrI	GCNGC	9 cut(s)	48, 67, 181, 184, 229, 287, 682, 691, 738
PspFI	CCCAGC	1 cut(s)	31
PspN4I	GGNNCC	5 cut(s)	274, 340, 553, 574, 616
PspPI	GGNCC	3 cut(s)	190, 614, 665
PvuII	CAGCTG	2 cut(s)	35, 630
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SatI	GCNGC	9 cut(s)	47, 66, 180, 183, 228, 286, 681, 690, 737
Sau3AI	GATC	2 cut(s)	450, 703
Sau96I	GGNCC	3 cut(s)	190, 614, 665
ScrFI	CCNGG	1 cut(s)	599
SetI	ASST	8 cut(s)	37, 70, 141, 308, 368, 458, 632, 741
SfaNI	GCATC	3 cut(s)	43, 525, 596
SinI	GGWCC	1 cut(s)	614
Sse9I	AATT	4 cut(s)	15, 21, 77, 534
SsiI	CCGC	6 cut(s)	180, 215, 243, 285, 411, 618
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	597
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	2 cut(s)	149, 475
TasI	AATT	4 cut(s)	15, 21, 77, 534
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	2 cut(s)	182, 288
TscAI	CASTG	1 cut(s)	653
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	7 cut(s)	46, 65, 182, 227, 680, 689, 736
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	4 cut(s)	70, 532, 608, 661
TspRI	CASTG	1 cut(s)	653
VpaK11BI	GGWCC	1 cut(s)	614
XapI	RAATTY	1 cut(s)	77
XbaI	TCTAGA	1 cut(s)	11
XmiI	GTMKAC	2 cut(s)	654, 699
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.