Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003756

Physical Location & Seq

Genomic Coordinates Forward (+)

69097288 .. 69097829

Gene Structure 542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG426800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGCCGATTTCTAGTATTGCAGTGGGAAACCCGGCTGAGTTCGGGAGCGTCGACGCTCTCAGAGCAGCTCTTGCTGAGTTTATCTCCGTCCTCATCTTTGTTTTCGCTGGCTCGGGTTCAGGCGTAGCTTTCGCCGAGCTCACTGACAATGCATCAACAACACCCGCCGGCCTTATAGCCGCGGCCGTGGCCCACGCCTTTGCCCTTTTCGTGGCGGTTGCCATAGCTGCAAACATCTCCGGCGGTCATGTTAACCCCGCTGTCACATTCGGTGCCTTCCTTGGCGGCAACATCACTCTCGTAAGGAGTATCTTGTACTGGATTGCCCAGCTGCTCGGATCCGTTGTTGCTTGCTTGCTCCTCAAGTTTGCAACCAATGGAATGGTAAGCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0009705 GO:0015204 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042807 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

131

Amino Acids

13.13

Weight (kDa)

5.76

Isoelectric Point (pI)

30.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	14 - 128	2.3e-35	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36830 AT3G26520
fragaria_vesca	FvH4_3g34940 FvH4_3g34940 FvH4_6g16770 FvH4_7g03120
malus_domestica	MD03G1100200.v1.1
prunus_persica	Prupe.6G085200_v2.0.a1 Prupe.7G125900_v2.0.a1
pyrus_communis	pycom03g08240 pycom11g09610 pycom12g10750
rosa_chinensis	RchiOBHm_Chr3g0470701 RchiOBHm_Chr5g0062791
rosa_laevigata	RLG00000024246 RLG00000035580
rosa_multiflora	Rmu_co8269841.1_g000001 Rmu_sc0002790.1_g000002 Rmu_sc0006168.1_g000020 Rmu_ssc0000472.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017830 Rroxscaffold_6G00410570
rosa_rugosa	Rorug03G0112300 Rorug05G0351600
rosa_samantha	Rh3AG161800 Rh3BG186400 Rh3CG176700 Rh3DG188800 Rh5AG412900 Rh5BG426800 Rh5CG450700 Rh5DG440700
rosa_wichuraiana	Rw0G004640 Rw5G038800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	272
AccI	GTMKAC	1 cut(s)	51
AccII	CGCG	1 cut(s)	182
AciI	CCGC	7 cut(s)	165, 180, 182, 215, 243, 258, 285
AclWI	GGATC	2 cut(s)	333, 346
AcoI	YGGCCR	1 cut(s)	183
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	1 cut(s)	211
AluBI	AGCT	5 cut(s)	68, 128, 139, 227, 331
AluI	AGCT	5 cut(s)	68, 128, 139, 227, 331
Alw21I	GWGCWC	1 cut(s)	141
AlwI	GGATC	2 cut(s)	333, 346
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	3 cut(s)	169, 183, 189
ApeKI	GCWGC	3 cut(s)	65, 227, 331
AspS9I	GGNCC	1 cut(s)	190
AsuC2I	CCSGG	1 cut(s)	32
AvaI	CYCGRG	1 cut(s)	112
BamHI	GGATCC	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	3 cut(s)	77, 214, 318
BceAI	ACGGC	1 cut(s)	170
BcnI	CCSGG	1 cut(s)	32
BfaI	CTAG	1 cut(s)	12
BisI	GCNGC	6 cut(s)	66, 180, 183, 228, 286, 332
BlsI	GCNGC	6 cut(s)	67, 181, 184, 229, 287, 333
Bme1390I	CCNGG	1 cut(s)	32
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	2 cut(s)	274, 340
BmrFI	CCNGG	1 cut(s)	32
BmsI	GCATC	1 cut(s)	161
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	32
BsaJI	CCNNGG	3 cut(s)	180, 186, 280
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	323
BseDI	CCNNGG	3 cut(s)	180, 186, 280
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMII	CTCAG	3 cut(s)	27, 66, 73
BseNI	ACTGG	1 cut(s)	323
BseRI	GAGGAG	1 cut(s)	350
BseX3I	CGGCCG	1 cut(s)	183
BseXI	GCAGC	3 cut(s)	77, 214, 318
BseYI	CCCAGC	1 cut(s)	327
Bsh1236I	CGCG	1 cut(s)	182
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	3 cut(s)	171, 185, 191
BshNI	GGYRCC	1 cut(s)	272
BsiEI	CGRYCG	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	141
BsiHKCI	CYCGRG	1 cut(s)	112
BsiSI	CCGG	3 cut(s)	32, 168, 240
BslI	CCNNNNNNNGG	1 cut(s)	211
BsnI	GGCC	3 cut(s)	171, 185, 191
BsoBI	CYCGRG	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	338
BspACI	CCGC	7 cut(s)	165, 180, 182, 215, 243, 258, 285
BspANI	GGCC	3 cut(s)	171, 185, 191
BspCNI	CTCAG	3 cut(s)	28, 67, 72
BspFNI	CGCG	1 cut(s)	182
BspLI	GGNNCC	2 cut(s)	274, 340
BspPI	GGATC	2 cut(s)	333, 346
BspT107I	GGYRCC	1 cut(s)	272
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	323
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	3 cut(s)	180, 186, 280
BssMI	GATC	1 cut(s)	338
BssT1I	CCWWGG	1 cut(s)	280
BstAPI	GCANNNNNTGC	1 cut(s)	71
BstC8I	GCNNGC	4 cut(s)	109, 169, 352, 356
BstDEI	CTNAG	3 cut(s)	36, 59, 75
BstDSI	CCRYGG	2 cut(s)	180, 186
BstFNI	CGCG	1 cut(s)	182
BstKTI	GATC	1 cut(s)	341
BstMBI	GATC	1 cut(s)	338
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 71, 188, 227
BstSCI	CCNGG	1 cut(s)	30
BstUI	CGCG	1 cut(s)	182
BstV1I	GCAGC	3 cut(s)	77, 214, 318
BstX2I	RGATCY	1 cut(s)	338
BstXI	CCANNNNNNTGG	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	338
BstZI	CGGCCG	1 cut(s)	183
BsuRI	GGCC	3 cut(s)	171, 185, 191
BtgI	CCRYGG	2 cut(s)	180, 186
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	27, 141
Cac8I	GCNNGC	4 cut(s)	109, 169, 352, 356
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	190
Cfr42I	CCGCGG	1 cut(s)	183
CseI	GACGC	2 cut(s)	37, 62
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	1 cut(s)	248
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	3 cut(s)	36, 59, 75
DpnI	GATC	1 cut(s)	340
DpnII	GATC	1 cut(s)	338
EaeI	YGGCCR	1 cut(s)	183
EagI	CGGCCG	1 cut(s)	183
Ecl136II	GAGCTC	1 cut(s)	139
EclXI	CGGCCG	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	141
Eco52I	CGGCCG	1 cut(s)	183
Eco53kI	GAGCTC	1 cut(s)	139
Eco88I	CYCGRG	1 cut(s)	112
EcoICRI	GAGCTC	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	280
EcoT22I	ATGCAT	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	1 cut(s)	251
FaiI	YATR	3 cut(s)	176, 224, 249
FatI	CATG	1 cut(s)	247
FauI	CCCGC	2 cut(s)	172, 265
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	6 cut(s)	66, 180, 183, 228, 286, 332
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	6 cut(s)	66, 180, 183, 228, 286, 332
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	6 cut(s)	66, 180, 183, 228, 286, 332
GsaI	CCCAGC	1 cut(s)	331
HaeIII	GGCC	3 cut(s)	171, 185, 191
HapII	CCGG	3 cut(s)	32, 168, 240
HgaI	GACGC	2 cut(s)	37, 62
Hin1II	CATG	1 cut(s)	251
HincII	GTYRAC	2 cut(s)	52, 253
HindII	GTYRAC	2 cut(s)	52, 253
HpaI	GTTAAC	1 cut(s)	253
HpaII	CCGG	3 cut(s)	32, 168, 240
Hpy166II	GTNNAC	2 cut(s)	52, 253
Hpy188I	TCNGA	2 cut(s)	62, 338
Hpy188III	TCNNGA	1 cut(s)	43
Hpy8I	GTNNAC	2 cut(s)	52, 253
Hpy99I	CGWCG	2 cut(s)	53, 56
HpyAV	CCTTC	1 cut(s)	286
HpyCH4V	TGCA	4 cut(s)	20, 152, 230, 371
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 71, 188, 227
HpyF3I	CTNAG	3 cut(s)	36, 59, 75
Hsp92II	CATG	1 cut(s)	251
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
KspAI	GTTAAC	1 cut(s)	253
KspI	CCGCGG	1 cut(s)	183
Kzo9I	GATC	1 cut(s)	338
LmnI	GCTCC	2 cut(s)	45, 363
LpnPI	CCDG	7 cut(s)	45, 93, 105, 181, 253, 304, 341
Lsp1109I	GCAGC	3 cut(s)	77, 214, 318
LweI	GCATC	1 cut(s)	161
MaeI	CTAG	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	1 cut(s)	340
MboI	GATC	1 cut(s)	338
MflI	RGATCY	1 cut(s)	338
MhlI	GDGCHC	1 cut(s)	141
MnlI	CCTC	2 cut(s)	101, 371
Mph1103I	ATGCAT	1 cut(s)	154
MroNI	GCCGGC	1 cut(s)	167
MseI	TTAA	1 cut(s)	252
MspA1I	CMGCKG	3 cut(s)	182, 260, 331
MspI	CCGG	3 cut(s)	32, 168, 240
MspR9I	CCNGG	1 cut(s)	32
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	4 cut(s)	62, 71, 188, 227
NaeI	GCCGGC	1 cut(s)	169
NciI	CCSGG	1 cut(s)	32
NdeII	GATC	1 cut(s)	338
NgoMIV	GCCGGC	1 cut(s)	167
NlaIII	CATG	1 cut(s)	251
NlaIV	GGNNCC	2 cut(s)	274, 340
NmeAIII	GCCGAG	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	262
NsiI	ATGCAT	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PdiI	GCCGGC	1 cut(s)	169
PkrI	GCNGC	6 cut(s)	67, 181, 184, 229, 287, 333
Psp124BI	GAGCTC	1 cut(s)	141
PspFI	CCCAGC	1 cut(s)	327
PspN4I	GGNNCC	2 cut(s)	274, 340
PspPI	GGNCC	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	338
PvuII	CAGCTG	1 cut(s)	331
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SacI	GAGCTC	1 cut(s)	141
SacII	CCGCGG	1 cut(s)	183
SalI	GTCGAC	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	6 cut(s)	66, 180, 183, 228, 286, 332
Sau3AI	GATC	1 cut(s)	338
Sau96I	GGNCC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	5 cut(s)	70, 130, 141, 229, 333
SfaNI	GCATC	1 cut(s)	161
Sfr303I	CCGCGG	1 cut(s)	183
SgrBI	CCGCGG	1 cut(s)	183
SgrDI	CGTCGACG	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
SsiI	CCGC	7 cut(s)	165, 180, 182, 215, 243, 258, 285
SspMI	CTAG	1 cut(s)	12
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	280
TaqI	TCGA	1 cut(s)	51
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	3 cut(s)	182, 185, 288
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	2 cut(s)	27, 148
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	3 cut(s)	65, 227, 331
Tsp45I	GTSAC	1 cut(s)	262
TspGWI	ACGGA	2 cut(s)	76, 331
TspRI	CASTG	2 cut(s)	27, 148
XmiI	GTMKAC	1 cut(s)	51
XspI	CTAG	1 cut(s)	12
Zsp2I	ATGCAT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.