Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0003756

Physical Location & Seq

Genomic Coordinates Reverse (-)

15524310 .. 15526566

Gene Structure 2257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG176700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGCCGATCAGGAATATTGCCGTGGGCCGACCCGAGGATACTTACCACCCTGACGCCCTCAAGGCCGGGCTTGCCGAGTTCATCTCCACTCTCATCTTCGTCTTCGCCGGCGAAGGCTCCGGCATGGCCTTCAACAAACTCACCGACAACGGCTCCACCACTCCCGCTGGACTCGTCGCCGCTGCCCTAGCTCACGCCTTTGGTCTTTTTGTCGCCGTCGCAGTCGCCGCCAACATCTCCGGCGGACACGTCAACCCCGCCGTCACCTTCGGCGCCTTCGTCGGAGGTAACATCTCTCTCCTACGTGGCATCCTCTACTGGGTCGCTCAGCTCCTCGGATCCACCGTCGCTTGCTTGCTTCTCAAGTTCGCCACCAACGGCCAGACCACCTCTGCTTTTGCTCTGTCCTCCGGAGTTGGTGTGTGGAACGCGTTCGTATTCGAGATAGTGATGACGTTCGGGCTGGTGTACACCGTCTACGCCACCGCCGTTGACCCCAAGAGGGGGAACGTGGGAACAATCGCGCCCATCGCGATTGGTTTCATCGTTGGCGCCAATATTTTGGCGGGTGGGGCATTCGACGGAGCCTCCATGAACCCGGCCGTGTCTTTCGGACCGGCTTTGGTGAGCTGGAACTGGGAGAACCACTGGGTCTACTGGGCCGGACCTTTGATCGGCGGCGGTATCGCCGGGCTTGTTTATGAGTTCTTCTTCATCAGCCACAGCGGCCACGAGCCACTGGCCGGCGGTGAATACGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0006855 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009705 GO:0009941 GO:0015204 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0015893 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042221 GO:0042493 GO:0042807 GO:0042886 GO:0042887 GO:0042891 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0080170 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

253

Amino Acids

26.09

Weight (kDa)

5.57

Isoelectric Point (pI)

26.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	16 - 234	7.4e-81	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36830 AT3G26520
fragaria_vesca	FvH4_3g34940 FvH4_3g34940 FvH4_6g16770 FvH4_7g03120
malus_domestica	MD03G1100200.v1.1
prunus_persica	Prupe.6G085200_v2.0.a1 Prupe.7G125900_v2.0.a1
pyrus_communis	pycom03g08240 pycom11g09610 pycom12g10750
rosa_chinensis	RchiOBHm_Chr3g0470701 RchiOBHm_Chr5g0062791
rosa_laevigata	RLG00000024246 RLG00000035580
rosa_multiflora	Rmu_co8269841.1_g000001 Rmu_sc0002790.1_g000002 Rmu_sc0006168.1_g000020 Rmu_ssc0000472.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017830 Rroxscaffold_6G00410570
rosa_rugosa	Rorug03G0112300 Rorug05G0351600
rosa_samantha	Rh3AG161800 Rh3BG186400 Rh3CG176700 Rh3DG188800 Rh5AG412900 Rh5BG426800 Rh5CG450700 Rh5DG440700
rosa_wichuraiana	Rw0G004640 Rw5G038800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	272, 551
AccI	GTMKAC	2 cut(s)	477, 654
AccII	CGCG	3 cut(s)	431, 524, 533
AccIII	TCCGGA	1 cut(s)	410
AclWI	GGATC	2 cut(s)	333, 346
AcoI	YGGCCR	4 cut(s)	379, 600, 727, 741
AcyI	GRCGYC	3 cut(s)	54, 273, 552
AfaI	GTAC	1 cut(s)	470
AfiI	CCNNNNNNNGG	7 cut(s)	34, 319, 502, 503, 504, 674, 743
AflIII	ACRYGT	2 cut(s)	247, 429
AgsI	TTSAA	1 cut(s)	133
AjiI	CACGTC	1 cut(s)	250
AluBI	AGCT	3 cut(s)	191, 331, 630
AluI	AGCT	3 cut(s)	191, 331, 630
AlwI	GGATC	2 cut(s)	333, 346
Ama87I	CYCGRG	1 cut(s)	32
Aor13HI	TCCGGA	1 cut(s)	410
AoxI	GGCC	8 cut(s)	25, 63, 126, 379, 600, 660, 727, 741
ApeKI	GCWGC	1 cut(s)	182
Asp700I	GAANNNNTTC	1 cut(s)	431
AspLEI	GCGC	3 cut(s)	275, 526, 554
AspS9I	GGNCC	4 cut(s)	25, 614, 660, 665
AsuC2I	CCSGG	3 cut(s)	67, 599, 691
AsuHPI	GGTGA	4 cut(s)	133, 256, 637, 761
AvaI	CYCGRG	1 cut(s)	32
AvaII	GGWCC	2 cut(s)	614, 665
BamHI	GGATCC	1 cut(s)	338
BanI	GGYRCC	2 cut(s)	272, 551
BauI	CACGAG	1 cut(s)	731
BbsI	GAAGAC	1 cut(s)	94
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	1 cut(s)	536
BceAI	ACGGC	7 cut(s)	5, 166, 200, 245, 394, 473, 587
BciVI	GTATCC	1 cut(s)	31
BcnI	CCSGG	3 cut(s)	67, 599, 691
BfaI	CTAG	2 cut(s)	188, 760
BfoI	RGCGCY	2 cut(s)	276, 555
BfuI	GTATCC	1 cut(s)	31
BglI	GCCNNNNNGGC	2 cut(s)	62, 726
BisI	GCNGC	5 cut(s)	180, 183, 228, 679, 727
BlpI	GCTNAGC	1 cut(s)	327
BlsI	GCNGC	5 cut(s)	181, 184, 229, 680, 728
Bme1390I	CCNGG	3 cut(s)	67, 599, 691
Bme18I	GGWCC	2 cut(s)	614, 665
BmeT110I	CYCGRG	1 cut(s)	32
BmgBI	CACGTC	1 cut(s)	250
BmgT120I	GGNCC	4 cut(s)	25, 614, 660, 665
BmiI	GGNNCC	6 cut(s)	118, 154, 274, 340, 553, 586
BmrFI	CCNGG	3 cut(s)	67, 599, 691
BmrI	ACTGGG	4 cut(s)	328, 646, 658, 667
BmsI	GCATC	1 cut(s)	318
BmuI	ACTGGG	4 cut(s)	328, 646, 658, 667
BpiI	GAAGAC	1 cut(s)	94
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
Bpu1102I	GCTNAGC	1 cut(s)	327
BpuEI	CTTGAG	2 cut(s)	44, 347
BpuMI	CCSGG	3 cut(s)	67, 599, 691
BsaAI	YACGTR	1 cut(s)	305
BsaHI	GRCGYC	3 cut(s)	54, 273, 552
BsaJI	CCNNGG	3 cut(s)	21, 33, 334
BsaWI	WCCGGW	1 cut(s)	410
BsaXI	ACNNNNNCTCC	6 cut(s)	137, 167, 405, 435, 572, 602
Bsc4I	CCNNNNNNNGG	7 cut(s)	34, 319, 502, 503, 504, 674, 743
Bse118I	RCCGGY	3 cut(s)	107, 616, 743
Bse1I	ACTGG	5 cut(s)	323, 641, 653, 662, 744
BseAI	TCCGGA	1 cut(s)	410
BseDI	CCNNGG	3 cut(s)	21, 33, 334
BseGI	GGATG	1 cut(s)	309
BseLI	CCNNNNNNNGG	7 cut(s)	34, 319, 502, 503, 504, 674, 743
BseMII	CTCAG	1 cut(s)	341
BseNI	ACTGG	5 cut(s)	323, 641, 653, 662, 744
BseRI	GAGGAG	1 cut(s)	323
BseX3I	CGGCCG	1 cut(s)	600
BseXI	GCAGC	1 cut(s)	169
Bsh1236I	CGCG	3 cut(s)	431, 524, 533
Bsh1285I	CGRYCG	1 cut(s)	603
BshFI	GGCC	8 cut(s)	27, 65, 128, 381, 602, 662, 729, 743
BshNI	GGYRCC	2 cut(s)	272, 551
BsiEI	CGRYCG	1 cut(s)	603
BsiHKCI	CYCGRG	1 cut(s)	32
BslI	CCNNNNNNNGG	7 cut(s)	34, 319, 502, 503, 504, 674, 743
BsmI	GAATGC	1 cut(s)	575
BsnI	GGCC	8 cut(s)	27, 65, 128, 381, 602, 662, 729, 743
BsoBI	CYCGRG	1 cut(s)	32
Bsp13I	TCCGGA	1 cut(s)	410
Bsp1407I	TGTACA	1 cut(s)	468
Bsp143I	GATC	3 cut(s)	6, 338, 672
Bsp1720I	GCTNAGC	1 cut(s)	327
Bsp68I	TCGCGA	1 cut(s)	533
BspANI	GGCC	8 cut(s)	27, 65, 128, 381, 602, 662, 729, 743
BspCNI	CTCAG	1 cut(s)	340
BspEI	TCCGGA	1 cut(s)	410
BspFNI	CGCG	3 cut(s)	431, 524, 533
BspLI	GGNNCC	6 cut(s)	118, 154, 274, 340, 553, 586
BspPI	GGATC	2 cut(s)	333, 346
BspT107I	GGYRCC	2 cut(s)	272, 551
BsrFI	RCCGGY	3 cut(s)	107, 616, 743
BsrGI	TGTACA	1 cut(s)	468
BsrI	ACTGG	5 cut(s)	323, 641, 653, 662, 744
BssAI	RCCGGY	3 cut(s)	107, 616, 743
BssECI	CCNNGG	3 cut(s)	21, 33, 334
BssMI	GATC	3 cut(s)	6, 338, 672
BssNI	GRCGYC	3 cut(s)	54, 273, 552
BssSI	CACGAG	1 cut(s)	731
Bst2BI	CACGAG	1 cut(s)	731
Bst4CI	ACNGT	2 cut(s)	346, 475
BstACI	GRCGYC	3 cut(s)	54, 273, 552
BstAUI	TGTACA	1 cut(s)	468
BstBAI	YACGTR	1 cut(s)	305
BstC8I	GCNNGC	5 cut(s)	72, 109, 352, 356, 745
BstDEI	CTNAG	1 cut(s)	327
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	309
BstFNI	CGCG	3 cut(s)	431, 524, 533
BstH2I	RGCGCY	2 cut(s)	276, 555
BstHHI	GCGC	3 cut(s)	275, 526, 554
BstKTI	GATC	3 cut(s)	9, 341, 675
BstMBI	GATC	3 cut(s)	6, 338, 672
BstMCI	CGRYCG	1 cut(s)	603
BstMWI	GCNNNNNNNGC	7 cut(s)	62, 71, 188, 227, 530, 572, 726
BstSCI	CCNGG	3 cut(s)	65, 597, 689
BstUI	CGCG	3 cut(s)	431, 524, 533
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	94
BstX2I	RGATCY	1 cut(s)	338
BstXI	CCANNNNNNTGG	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	338
BstZI	CGGCCG	1 cut(s)	600
BsuI	GTATCC	1 cut(s)	31
BsuRI	GGCC	8 cut(s)	27, 65, 128, 381, 602, 662, 729, 743
BtgI	CCRYGG	1 cut(s)	21
BtgZI	GCGATG	1 cut(s)	514
BtrI	CACGTC	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	309
BtsIMutI	CAGTG	2 cut(s)	646, 737
BtuMI	TCGCGA	1 cut(s)	533
Cac8I	GCNNGC	5 cut(s)	72, 109, 352, 356, 745
CfoI	GCGC	3 cut(s)	275, 526, 554
Cfr10I	RCCGGY	3 cut(s)	107, 616, 743
Cfr13I	GGNCC	4 cut(s)	25, 614, 660, 665
CpoI	CGGWCCG	1 cut(s)	614
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	469
CspCI	CAANNNNNGTGG	2 cut(s)	472, 507
CspI	CGGWCCG	1 cut(s)	614
CviAII	CATG	2 cut(s)	124, 592
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	1 cut(s)	327
DinI	GGCGCC	2 cut(s)	274, 553
DpnI	GATC	3 cut(s)	8, 340, 674
DpnII	GATC	3 cut(s)	6, 338, 672
EaeI	YGGCCR	4 cut(s)	379, 600, 727, 741
EagI	CGGCCG	1 cut(s)	600
EciI	GGCGGA	1 cut(s)	258
EclXI	CGGCCG	1 cut(s)	600
Eco47I	GGWCC	2 cut(s)	614, 665
Eco52I	CGGCCG	1 cut(s)	600
Eco88I	CYCGRG	1 cut(s)	32
EgeI	GGCGCC	2 cut(s)	274, 553
EheI	GGCGCC	2 cut(s)	274, 553
FaeI	CATG	2 cut(s)	127, 595
FaiI	YATR	3 cut(s)	125, 593, 702
FatI	CATG	2 cut(s)	123, 591
FauI	CCCGC	3 cut(s)	172, 265, 559
FblI	GTMKAC	2 cut(s)	477, 654
Fnu4HI	GCNGC	5 cut(s)	180, 183, 228, 679, 727
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	5 cut(s)	180, 183, 228, 679, 727
FspBI	CTAG	2 cut(s)	188, 760
GlaI	GCGC	3 cut(s)	274, 525, 553
GluI	GCNGC	5 cut(s)	180, 183, 228, 679, 727
HaeII	RGCGCY	2 cut(s)	276, 555
HaeIII	GGCC	8 cut(s)	27, 65, 128, 381, 602, 662, 729, 743
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	3 cut(s)	275, 526, 554
Hin1I	GRCGYC	3 cut(s)	54, 273, 552
Hin1II	CATG	2 cut(s)	127, 595
Hin6I	GCGC	3 cut(s)	273, 524, 552
HinP1I	GCGC	3 cut(s)	273, 524, 552
HincII	GTYRAC	2 cut(s)	253, 493
HindII	GTYRAC	2 cut(s)	253, 493
HinfI	GANTC	1 cut(s)	171
HphI	GGTGA	4 cut(s)	133, 256, 637, 761
Hpy166II	GTNNAC	6 cut(s)	253, 469, 471, 478, 493, 655
Hpy188I	TCNGA	3 cut(s)	284, 338, 614
Hpy188III	TCNNGA	4 cut(s)	10, 411, 442, 532
Hpy8I	GTNNAC	6 cut(s)	253, 469, 471, 478, 493, 655
Hpy99I	CGWCG	5 cut(s)	179, 221, 284, 350, 584
HpyAV	CCTTC	4 cut(s)	107, 139, 277, 286
HpyCH4III	ACNGT	2 cut(s)	346, 475
HpyCH4IV	ACGT	4 cut(s)	249, 304, 455, 510
HpyF10VI	GCNNNNNNNGC	7 cut(s)	62, 71, 188, 227, 530, 572, 726
HpyF3I	CTNAG	1 cut(s)	327
HpySE526I	ACGT	4 cut(s)	249, 304, 455, 510
Hsp92I	GRCGYC	3 cut(s)	54, 273, 552
Hsp92II	CATG	2 cut(s)	127, 595
HspAI	GCGC	3 cut(s)	273, 524, 552
KasI	GGCGCC	2 cut(s)	272, 551
Kpn2I	TCCGGA	1 cut(s)	410
KroI	GCCGGC	2 cut(s)	107, 743
KroNI	GCCGGC	2 cut(s)	109, 745
Kzo9I	GATC	3 cut(s)	6, 338, 672
LmnI	GCTCC	4 cut(s)	122, 158, 336, 584
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	1 cut(s)	318
MaeI	CTAG	2 cut(s)	188, 760
MaeII	ACGT	4 cut(s)	249, 304, 455, 510
MaeIII	GTNAC	2 cut(s)	262, 287
MalI	GATC	3 cut(s)	8, 340, 674
MboI	GATC	3 cut(s)	6, 338, 672
MboII	GAAGA	4 cut(s)	88, 94, 700, 703
MflI	RGATCY	1 cut(s)	338
MluI	ACGCGT	1 cut(s)	429
Mly113I	GGCGCC	2 cut(s)	273, 552
MlyI	GAGTC	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	9 cut(s)	28, 68, 278, 323, 344, 400, 418, 495, 598
MreI	CGCCGGCG	1 cut(s)	107
MroI	TCCGGA	1 cut(s)	410
MroNI	GCCGGC	2 cut(s)	107, 743
MroXI	GAANNNNTTC	1 cut(s)	431
MspA1I	CMGCKG	3 cut(s)	167, 182, 726
MspR9I	CCNGG	3 cut(s)	67, 599, 691
Mva1269I	GAATGC	1 cut(s)	575
MvnI	CGCG	3 cut(s)	431, 524, 533
MwoI	GCNNNNNNNGC	7 cut(s)	62, 71, 188, 227, 530, 572, 726
NaeI	GCCGGC	2 cut(s)	109, 745
NarI	GGCGCC	2 cut(s)	273, 552
NciI	CCSGG	3 cut(s)	67, 599, 691
NdeII	GATC	3 cut(s)	6, 338, 672
NgoMIV	GCCGGC	2 cut(s)	107, 743
NlaIII	CATG	2 cut(s)	127, 595
NlaIV	GGNNCC	6 cut(s)	118, 154, 274, 340, 553, 586
NmeAIII	GCCGAG	1 cut(s)	100
NmuCI	GTSAC	1 cut(s)	262
NruI	TCGCGA	1 cut(s)	533
PcsI	WCGNNNNNNNCGW	3 cut(s)	276, 342, 486
PctI	GAATGC	1 cut(s)	575
PdiI	GCCGGC	2 cut(s)	109, 745
PdmI	GAANNNNTTC	1 cut(s)	431
PkrI	GCNGC	5 cut(s)	181, 184, 229, 680, 728
PleI	GAGTC	1 cut(s)	165
PluTI	GGCGCC	2 cut(s)	276, 555
PpsI	GAGTC	1 cut(s)	165
Ppu21I	YACGTR	1 cut(s)	305
PspN4I	GGNNCC	6 cut(s)	118, 154, 274, 340, 553, 586
PspPI	GGNCC	4 cut(s)	25, 614, 660, 665
PsuI	RGATCY	1 cut(s)	338
RruI	TCGCGA	1 cut(s)	533
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
Rsr2I	CGGWCCG	1 cut(s)	614
RsrII	CGGWCCG	1 cut(s)	614
SatI	GCNGC	5 cut(s)	180, 183, 228, 679, 727
Sau3AI	GATC	3 cut(s)	6, 338, 672
Sau96I	GGNCC	4 cut(s)	25, 614, 660, 665
SchI	GAGTC	1 cut(s)	165
ScrFI	CCNGG	3 cut(s)	67, 599, 691
SfaNI	GCATC	1 cut(s)	318
SfoI	GGCGCC	2 cut(s)	274, 553
SgrAI	CRCCGGYG	1 cut(s)	107
SinI	GGWCC	2 cut(s)	614, 665
SmlI	CTYRAG	2 cut(s)	59, 362
SmoI	CTYRAG	2 cut(s)	59, 362
SspDI	GGCGCC	2 cut(s)	272, 551
SspI	AATATT	2 cut(s)	16, 559
SspMI	CTAG	2 cut(s)	188, 760
StyD4I	CCNGG	3 cut(s)	65, 597, 689
TaaI	ACNGT	2 cut(s)	346, 475
TaiI	ACGT	4 cut(s)	252, 307, 458, 513
TaqI	TCGA	2 cut(s)	441, 579
TatI	WGTACW	1 cut(s)	468
TauI	GCSGC	4 cut(s)	182, 230, 681, 729
TscAI	CASTG	2 cut(s)	653, 744
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	1 cut(s)	182
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	4 cut(s)	70, 532, 608, 703
TspGWI	ACGGA	1 cut(s)	597
TspRI	CASTG	2 cut(s)	653, 744
VpaK11BI	GGWCC	2 cut(s)	614, 665
XmiI	GTMKAC	2 cut(s)	477, 654
XmnI	GAANNNNTTC	1 cut(s)	431
XspI	CTAG	2 cut(s)	188, 760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.