FvH4_6g16770

Belongs to the MIP aquaporin (TC 1.A.8) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
10698176 .. 10700027
1852 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16770.t1

Sequence Viewer

Length: 762 bp
ATGCCGATCCAGAACATTGCCGTGGGCCGACCCGAGGATGCGTACCACCCGGACGCCCTCAAGGCCGGGCTTGCCGAGTTCATCTCCACTCTCATCTTCGTCTTCGCCGGCGAAGGCTCCGGCATGGCCTTCAACAAGCTCACTGACGACGGCGCCACCACTCCTGCCGGGCTCGTCGCCGCTGCTCTAGCTCACGCTTTTGGTCTTTTTGTTGCCGTCTCGGTCGCAGCCAACATCTCCGGCGGACACGTCAACCCCGCAGTCACCTTCGGCGCCTTCGTCGGAGGTAACATCTCTCTCCTGCGTGGCATCCTCTACTGGATCGCTCAGCTCCTCGGATCCACCGTCGCTTGCTTGCTTCTTAAGTTCGTCACCAACGGCCAGACCACCTCTGCCTTTGCTCTCTCCTCCGGAGTTGGAGTGTGGAACGCGTTCGTTTTCGAGATCGTGATGACGTTCGGGCTGGTGTACACCGTCTACGCCACCGCGGTTGACCCCAAGAGGGGGAGCGTGGGAACAATCGCGCCCATAGCGATTGGTTTCATCGTTGGCGCCAACATTTTGGCTGGTGGAGCATTCGACGGAGCCTCCATGAACCCGGCCGTGTCTTTTGGACCGGCTTTGGTGAGCTGGAGCTGGGAGAACCACTGGGTCTACTGGGCCGGACCTTTGGTCGGCGGCGGCCTCGCCGGGCTTGTTTACGAGTTCTTCTTCATCAACAACAGCGGCCACGAGCCACTGCCCGGCGGTGAATACGCCTAG

Protein Analysis

254

Amino Acids

26.04

Weight (kDa)

4.98

Isoelectric Point (pI)

27.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIP PF00230 16 - 234 2.3e-81 Major intrinsic protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 152, 272, 551
AccI GTMKAC 2 cut(s) 477, 654
AccII CGCG 3 cut(s) 431, 488, 524
AccIII TCCGGA 1 cut(s) 410
AciI CCGC 9 cut(s) 180, 243, 258, 486, 488, 678, 681, 726, 747
AclWI GGATC 3 cut(s) 329, 333, 346
AcoI YGGCCR 3 cut(s) 379, 600, 727
AcyI GRCGYC 4 cut(s) 54, 153, 273, 552
AfaI GTAC 2 cut(s) 44, 470
AfiI CCNNNNNNNGG 6 cut(s) 34, 502, 503, 504, 674, 743
AflII CTTAAG 1 cut(s) 362
AflIII ACRYGT 2 cut(s) 247, 429
AgsI TTSAA 1 cut(s) 133
AhdI GACNNNNNGTC 1 cut(s) 671
AjiI CACGTC 1 cut(s) 250
AluBI AGCT 5 cut(s) 139, 191, 331, 630, 636
AluI AGCT 5 cut(s) 139, 191, 331, 630, 636
Alw26I GTCTC 1 cut(s) 223
AlwI GGATC 3 cut(s) 329, 333, 346
Ama87I CYCGRG 1 cut(s) 32
Aor13HI TCCGGA 1 cut(s) 410
AoxI GGCC 8 cut(s) 25, 63, 126, 379, 600, 660, 682, 727
ApeKI GCWGC 2 cut(s) 182, 227
Asp700I GAANNNNTTC 1 cut(s) 431
AspLEI GCGC 4 cut(s) 155, 275, 526, 554
AspS9I GGNCC 4 cut(s) 25, 614, 660, 665
AsuC2I CCSGG 6 cut(s) 50, 67, 169, 599, 691, 744
AsuHPI GGTGA 4 cut(s) 256, 364, 637, 761
AvaI CYCGRG 1 cut(s) 32
AvaII GGWCC 2 cut(s) 614, 665
BamHI GGATCC 1 cut(s) 338
BanI GGYRCC 3 cut(s) 152, 272, 551
BanII GRGCYC 1 cut(s) 174
BauI CACGAG 1 cut(s) 731
BbsI GAAGAC 1 cut(s) 94
BbvI GCAGC 2 cut(s) 169, 239
BceAI ACGGC 5 cut(s) 5, 166, 200, 394, 587
BcnI CCSGG 6 cut(s) 50, 67, 169, 599, 691, 744
BcoDI GTCTC 1 cut(s) 223
BfaI CTAG 2 cut(s) 188, 760
BfoI RGCGCY 3 cut(s) 156, 276, 555
BfrI CTTAAG 1 cut(s) 362
BglI GCCNNNNNGGC 1 cut(s) 62
BisI GCNGC 6 cut(s) 180, 183, 228, 679, 682, 727
BlpI GCTNAGC 1 cut(s) 327
BlsI GCNGC 6 cut(s) 181, 184, 229, 680, 683, 728
Bme1390I CCNGG 6 cut(s) 50, 67, 169, 599, 691, 744
Bme18I GGWCC 2 cut(s) 614, 665
BmeRI GACNNNNNGTC 1 cut(s) 671
BmeT110I CYCGRG 1 cut(s) 32
BmgBI CACGTC 1 cut(s) 250
BmgT120I GGNCC 4 cut(s) 25, 614, 660, 665
BmiI GGNNCC 6 cut(s) 118, 154, 274, 340, 553, 586
BmrFI CCNGG 6 cut(s) 50, 67, 169, 599, 691, 744
BmrI ACTGGG 2 cut(s) 658, 667
BmsI GCATC 2 cut(s) 28, 318
BmuI ACTGGG 2 cut(s) 658, 667
BpiI GAAGAC 1 cut(s) 94
BplI GAGNNNNNCTC 2 cut(s) 68, 100
BpmI CTGGAG 1 cut(s) 652
Bpu1102I GCTNAGC 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 44
BpuMI CCSGG 6 cut(s) 50, 67, 169, 599, 691, 744
BsaHI GRCGYC 4 cut(s) 54, 153, 273, 552
BsaJI CCNNGG 4 cut(s) 21, 33, 334, 486
BsaWI WCCGGW 1 cut(s) 410
BsaXI ACNNNNNCTCC 4 cut(s) 405, 435, 572, 602
Bsc4I CCNNNNNNNGG 6 cut(s) 34, 502, 503, 504, 674, 743
Bse118I RCCGGY 2 cut(s) 107, 616
Bse1I ACTGG 3 cut(s) 323, 653, 662
Bse3DI GCAATG 1 cut(s) 15
BseAI TCCGGA 1 cut(s) 410
BseDI CCNNGG 4 cut(s) 21, 33, 334, 486
BseGI GGATG 2 cut(s) 43, 309
BseLI CCNNNNNNNGG 6 cut(s) 34, 502, 503, 504, 674, 743
BseMI GCAATG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 341
BseNI ACTGG 3 cut(s) 323, 653, 662
BseRI GAGGAG 2 cut(s) 323, 397
BseX3I CGGCCG 1 cut(s) 600
BseXI GCAGC 2 cut(s) 169, 239
BseYI CCCAGC 1 cut(s) 636
Bsh1236I CGCG 3 cut(s) 431, 488, 524
Bsh1285I CGRYCG 2 cut(s) 225, 603
BshFI GGCC 8 cut(s) 27, 65, 128, 381, 602, 662, 684, 729
BshNI GGYRCC 3 cut(s) 152, 272, 551
BsiEI CGRYCG 2 cut(s) 225, 603
BsiHKCI CYCGRG 1 cut(s) 32
BslI CCNNNNNNNGG 6 cut(s) 34, 502, 503, 504, 674, 743
BsmAI GTCTC 1 cut(s) 223
BsmBI CGTCTC 1 cut(s) 223
BsmI GAATGC 1 cut(s) 575
BsnI GGCC 8 cut(s) 27, 65, 128, 381, 602, 662, 684, 729
BsoBI CYCGRG 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 174
Bsp13I TCCGGA 1 cut(s) 410
Bsp1407I TGTACA 1 cut(s) 468
Bsp143I GATC 4 cut(s) 6, 321, 338, 444
Bsp1720I GCTNAGC 1 cut(s) 327
BspACI CCGC 9 cut(s) 180, 243, 258, 486, 488, 678, 681, 726, 747
BspANI GGCC 8 cut(s) 27, 65, 128, 381, 602, 662, 684, 729
BspCNI CTCAG 1 cut(s) 340
BspEI TCCGGA 1 cut(s) 410
BspFNI CGCG 3 cut(s) 431, 488, 524
BspLI GGNNCC 6 cut(s) 118, 154, 274, 340, 553, 586
BspPI GGATC 3 cut(s) 329, 333, 346
BspT107I GGYRCC 3 cut(s) 152, 272, 551
BspTI CTTAAG 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 15
BsrFI RCCGGY 2 cut(s) 107, 616
BsrGI TGTACA 1 cut(s) 468
BsrI ACTGG 3 cut(s) 323, 653, 662
BssAI RCCGGY 2 cut(s) 107, 616
BssECI CCNNGG 4 cut(s) 21, 33, 334, 486
BssMI GATC 4 cut(s) 6, 321, 338, 444
BssNI GRCGYC 4 cut(s) 54, 153, 273, 552
BssSI CACGAG 1 cut(s) 731
Bst2BI CACGAG 1 cut(s) 731
Bst4CI ACNGT 2 cut(s) 346, 475
BstACI GRCGYC 4 cut(s) 54, 153, 273, 552
BstAFI CTTAAG 1 cut(s) 362
BstAUI TGTACA 1 cut(s) 468
BstC8I GCNNGC 4 cut(s) 72, 109, 352, 356
BstDEI CTNAG 1 cut(s) 327
BstDSI CCRYGG 2 cut(s) 21, 486
BstF5I GGATG 2 cut(s) 43, 309
BstFNI CGCG 3 cut(s) 431, 488, 524
BstH2I RGCGCY 3 cut(s) 156, 276, 555
BstHHI GCGC 4 cut(s) 155, 275, 526, 554
BstKTI GATC 4 cut(s) 9, 324, 341, 447
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 4 cut(s) 6, 321, 338, 444
BstMCI CGRYCG 2 cut(s) 225, 603
BstMWI GCNNNNNNNGC 5 cut(s) 62, 71, 188, 530, 572
BstSCI CCNGG 6 cut(s) 48, 65, 167, 597, 689, 742
BstUI CGCG 3 cut(s) 431, 488, 524
BstV1I GCAGC 2 cut(s) 169, 239
BstV2I GAAGAC 1 cut(s) 94
BstX2I RGATCY 1 cut(s) 338
BstXI CCANNNNNNTGG 1 cut(s) 562
BstYI RGATCY 1 cut(s) 338
BstZI CGGCCG 1 cut(s) 600
BsuRI GGCC 8 cut(s) 27, 65, 128, 381, 602, 662, 684, 729
BtgI CCRYGG 2 cut(s) 21, 486
BtrI CACGTC 1 cut(s) 250
BtsCI GGATG 2 cut(s) 43, 309
BtsI GCAGTG 1 cut(s) 737
BtsIMutI CAGTG 3 cut(s) 141, 646, 737
Cac8I GCNNGC 4 cut(s) 72, 109, 352, 356
CfoI GCGC 4 cut(s) 155, 275, 526, 554
Cfr10I RCCGGY 2 cut(s) 107, 616
Cfr13I GGNCC 4 cut(s) 25, 614, 660, 665
Cfr42I CCGCGG 1 cut(s) 489
CseI GACGC 1 cut(s) 62
Csp6I GTAC 2 cut(s) 43, 469
CspCI CAANNNNNGTGG 2 cut(s) 472, 507
CviAII CATG 2 cut(s) 124, 592
CviQI GTAC 2 cut(s) 43, 469
DdeI CTNAG 1 cut(s) 327
DinI GGCGCC 3 cut(s) 154, 274, 553
DpnI GATC 4 cut(s) 8, 323, 340, 446
DpnII GATC 4 cut(s) 6, 321, 338, 444
DriI GACNNNNNGTC 1 cut(s) 671
EaeI YGGCCR 3 cut(s) 379, 600, 727
EagI CGGCCG 1 cut(s) 600
Eam1105I GACNNNNNGTC 1 cut(s) 671
EciI GGCGGA 1 cut(s) 258
EclXI CGGCCG 1 cut(s) 600
Eco24I GRGCYC 1 cut(s) 174
Eco47I GGWCC 2 cut(s) 614, 665
Eco52I CGGCCG 1 cut(s) 600
Eco88I CYCGRG 1 cut(s) 32
EcoT38I GRGCYC 1 cut(s) 174
EgeI GGCGCC 3 cut(s) 154, 274, 553
EheI GGCGCC 3 cut(s) 154, 274, 553
Esp3I CGTCTC 1 cut(s) 223
FaeI CATG 2 cut(s) 127, 595
FaiI YATR 3 cut(s) 125, 530, 593
FatI CATG 2 cut(s) 123, 591
FauI CCCGC 1 cut(s) 265
FblI GTMKAC 2 cut(s) 477, 654
Fnu4HI GCNGC 6 cut(s) 180, 183, 228, 679, 682, 727
FokI GGATG 2 cut(s) 50, 296
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 6 cut(s) 180, 183, 228, 679, 682, 727
FspBI CTAG 2 cut(s) 188, 760
GlaI GCGC 4 cut(s) 154, 274, 525, 553
GluI GCNGC 6 cut(s) 180, 183, 228, 679, 682, 727
GsaI CCCAGC 1 cut(s) 640
GsuI CTGGAG 1 cut(s) 652
HaeII RGCGCY 3 cut(s) 156, 276, 555
HaeIII GGCC 8 cut(s) 27, 65, 128, 381, 602, 662, 684, 729
HgaI GACGC 1 cut(s) 62
HhaI GCGC 4 cut(s) 155, 275, 526, 554
Hin1I GRCGYC 4 cut(s) 54, 153, 273, 552
Hin1II CATG 2 cut(s) 127, 595
Hin6I GCGC 4 cut(s) 153, 273, 524, 552
HinP1I GCGC 4 cut(s) 153, 273, 524, 552
HincII GTYRAC 2 cut(s) 253, 493
HindII GTYRAC 2 cut(s) 253, 493
HphI GGTGA 4 cut(s) 256, 364, 637, 761
Hpy166II GTNNAC 7 cut(s) 253, 469, 471, 478, 493, 655, 700
Hpy188I TCNGA 2 cut(s) 284, 338
Hpy188III TCNNGA 4 cut(s) 10, 411, 442, 448
Hpy8I GTNNAC 7 cut(s) 253, 469, 471, 478, 493, 655, 700
Hpy99I CGWCG 5 cut(s) 152, 179, 284, 350, 584
HpyAV CCTTC 4 cut(s) 107, 139, 277, 286
HpyCH4III ACNGT 2 cut(s) 346, 475
HpyCH4IV ACGT 2 cut(s) 249, 455
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 71, 188, 530, 572
HpyF3I CTNAG 1 cut(s) 327
HpySE526I ACGT 2 cut(s) 249, 455
Hsp92I GRCGYC 4 cut(s) 54, 153, 273, 552
Hsp92II CATG 2 cut(s) 127, 595
HspAI GCGC 4 cut(s) 153, 273, 524, 552
KasI GGCGCC 3 cut(s) 152, 272, 551
Kpn2I TCCGGA 1 cut(s) 410
KroI GCCGGC 1 cut(s) 107
KroNI GCCGGC 1 cut(s) 109
KspI CCGCGG 1 cut(s) 489
Kzo9I GATC 4 cut(s) 6, 321, 338, 444
LmnI GCTCC 6 cut(s) 122, 336, 507, 572, 584, 633
Lsp1109I GCAGC 2 cut(s) 169, 239
LweI GCATC 2 cut(s) 28, 318
MaeI CTAG 2 cut(s) 188, 760
MaeII ACGT 2 cut(s) 249, 455
MaeIII GTNAC 3 cut(s) 262, 287, 370
MalI GATC 4 cut(s) 8, 323, 340, 446
MboI GATC 4 cut(s) 6, 321, 338, 444
MboII GAAGA 4 cut(s) 88, 94, 700, 703
MflI RGATCY 1 cut(s) 338
MhlI GDGCHC 1 cut(s) 174
MluI ACGCGT 1 cut(s) 429
Mly113I GGCGCC 3 cut(s) 153, 273, 552
MmeI TCCRAC 2 cut(s) 262, 397
MreI CGCCGGCG 1 cut(s) 107
MroI TCCGGA 1 cut(s) 410
MroNI GCCGGC 1 cut(s) 107
MroXI GAANNNNTTC 1 cut(s) 431
MseI TTAA 1 cut(s) 363
MslI CAYNNNNRTG 1 cut(s) 20
MspA1I CMGCKG 3 cut(s) 182, 488, 726
MspCI CTTAAG 1 cut(s) 362
MspR9I CCNGG 6 cut(s) 50, 67, 169, 599, 691, 744
Mva1269I GAATGC 1 cut(s) 575
MvnI CGCG 3 cut(s) 431, 488, 524
MwoI GCNNNNNNNGC 5 cut(s) 62, 71, 188, 530, 572
NaeI GCCGGC 1 cut(s) 109
NarI GGCGCC 3 cut(s) 153, 273, 552
NciI CCSGG 6 cut(s) 50, 67, 169, 599, 691, 744
NdeII GATC 4 cut(s) 6, 321, 338, 444
NgoMIV GCCGGC 1 cut(s) 107
NlaIII CATG 2 cut(s) 127, 595
NlaIV GGNNCC 6 cut(s) 118, 154, 274, 340, 553, 586
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 2 cut(s) 262, 370
PcsI WCGNNNNNNNCGW 2 cut(s) 276, 342
PctI GAATGC 1 cut(s) 575
PdiI GCCGGC 1 cut(s) 109
PdmI GAANNNNTTC 1 cut(s) 431
PkrI GCNGC 6 cut(s) 181, 184, 229, 680, 683, 728
PluTI GGCGCC 3 cut(s) 156, 276, 555
PspFI CCCAGC 1 cut(s) 636
PspN4I GGNNCC 6 cut(s) 118, 154, 274, 340, 553, 586
PspPI GGNCC 4 cut(s) 25, 614, 660, 665
PsuI RGATCY 1 cut(s) 338
RsaI GTAC 2 cut(s) 44, 470
RsaNI GTAC 2 cut(s) 43, 469
RseI CAYNNNNRTG 1 cut(s) 20
SacII CCGCGG 1 cut(s) 489
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 6 cut(s) 180, 183, 228, 679, 682, 727
Sau3AI GATC 4 cut(s) 6, 321, 338, 444
Sau96I GGNCC 4 cut(s) 25, 614, 660, 665
ScrFI CCNGG 6 cut(s) 50, 67, 169, 599, 691, 744
SduI GDGCHC 1 cut(s) 174
SfaNI GCATC 2 cut(s) 28, 318
SfoI GGCGCC 3 cut(s) 154, 274, 553
Sfr303I CCGCGG 1 cut(s) 489
SgrAI CRCCGGYG 1 cut(s) 107
SgrBI CCGCGG 1 cut(s) 489
SinI GGWCC 2 cut(s) 614, 665
SmiMI CAYNNNNRTG 1 cut(s) 20
SmlI CTYRAG 2 cut(s) 59, 362
SmoI CTYRAG 2 cut(s) 59, 362
SsiI CCGC 9 cut(s) 180, 243, 258, 486, 488, 678, 681, 726, 747
SspDI GGCGCC 3 cut(s) 152, 272, 551
SspMI CTAG 2 cut(s) 188, 760
StyD4I CCNGG 6 cut(s) 48, 65, 167, 597, 689, 742
TaaI ACNGT 2 cut(s) 346, 475
TaiI ACGT 2 cut(s) 252, 458
TaqI TCGA 2 cut(s) 441, 579
TaqII GACCGA 1 cut(s) 211
TatI WGTACW 1 cut(s) 468
TauI GCSGC 4 cut(s) 182, 681, 684, 729
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TscAI CASTG 3 cut(s) 148, 653, 744
TseFI GTSAC 2 cut(s) 262, 370
TseI GCWGC 2 cut(s) 182, 227
Tsp45I GTSAC 2 cut(s) 262, 370
TspDTI ATGAA 4 cut(s) 70, 532, 608, 703
TspGWI ACGGA 1 cut(s) 597
TspRI CASTG 3 cut(s) 148, 653, 744
Vha464I CTTAAG 1 cut(s) 362
VpaK11BI GGWCC 2 cut(s) 614, 665
XmiI GTMKAC 2 cut(s) 477, 654
XmnI GAANNNNTTC 1 cut(s) 431
XspI CTAG 2 cut(s) 188, 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.