Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003756

Physical Location & Seq

Genomic Coordinates Reverse (-)

3485514 .. 3487116

Gene Structure 1603 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g03120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGCCGATCTCTAGCATTGCCGTGGGAAGCCCATCTGAGTTCGGGAGCGCCGACGCTCTTAGAGCAGCTCTTGCTGAGTTTATCTCCACCCTCATCTTTGTTTTTGCCGGTTCCGGTTCAGGCGTAGCTTTCGCCGAGCTCACTGACAATGGAGCTACAACACCCGCCGGCCTTGTAGCAGCGGCCGTGGCACACGCCTTTGCCCTTTTCGTGGCGGTTGCCATCGCTGCAAACATCTCAGGCGGTCATGTTAACCCCGCTGTCACATTCGGTCTCTTCCTTGGCGGCAACATCACTCTCATCAGGGGTATCTTGTACTGGATTGCCCAGCTTCTCGGATCCGTTGTTGCTTGCTTGCTCCTCAAGTTAGCAACCGGTGGACTGACCATCTCTGCTTTCTCCCTGTCGACTGGTGTTGGAGCATGGAACGCAGTGGTGTTCGAAATCGTGATGACCTTCGGTTTGGTGTACACAGTGTACGCAACCGCCGTCGACAAAAGGTCCGCCGGAAACATCAGCATCATTGCACCAATCGCCATTGGTTTCATTGTTGGTGCTAACATCTTGGCCGGTGGTGCTTTTGACGGTGCTTCAATGAACCCAGCAGTGTCATTCGGACCCGCCGTCGTCAGCTGGTCATGGGCAAGCCACTGGGTCTACTGGCTCGGCCCACTCCTCGGTGCCGCCATTGCTGCCATCATCTACGACTGGATCCTCATCGCCCCAACCACCCACGAGCCACTACCCACCACAGACTACTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0009705 GO:0015204 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042807 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

255

Amino Acids

25.79

Weight (kDa)

4.85

Isoelectric Point (pI)

31.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	15 - 235	1.2e-75	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36830 AT3G26520
fragaria_vesca	FvH4_3g34940 FvH4_3g34940 FvH4_6g16770 FvH4_7g03120
malus_domestica	MD03G1100200.v1.1
prunus_persica	Prupe.6G085200_v2.0.a1 Prupe.7G125900_v2.0.a1
pyrus_communis	pycom03g08240 pycom11g09610 pycom12g10750
rosa_chinensis	RchiOBHm_Chr3g0470701 RchiOBHm_Chr5g0062791
rosa_laevigata	RLG00000024246 RLG00000035580
rosa_multiflora	Rmu_co8269841.1_g000001 Rmu_sc0002790.1_g000002 Rmu_sc0006168.1_g000020 Rmu_ssc0000472.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017830 Rroxscaffold_6G00410570
rosa_rugosa	Rorug03G0112300 Rorug05G0351600
rosa_samantha	Rh3AG161800 Rh3BG186400 Rh3CG176700 Rh3DG188800 Rh5AG412900 Rh5BG426800 Rh5CG450700 Rh5DG440700
rosa_wichuraiana	Rw0G004640 Rw5G038800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	680
AccI	GTMKAC	3 cut(s)	407, 492, 657
AclWI	GGATC	4 cut(s)	333, 346, 706, 719
AcoI	YGGCCR	2 cut(s)	183, 567
AfaI	GTAC	3 cut(s)	317, 470, 479
AfiI	CCNNNNNNNGG	2 cut(s)	211, 677
AgeI	ACCGGT	1 cut(s)	374
AgsI	TTSAA	1 cut(s)	594
AhdI	GACNNNNNGTC	2 cut(s)	499, 623
AluBI	AGCT	6 cut(s)	68, 128, 139, 155, 331, 633
AluI	AGCT	6 cut(s)	68, 128, 139, 155, 331, 633
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	1 cut(s)	278
AlwI	GGATC	4 cut(s)	333, 346, 706, 719
AoxI	GGCC	4 cut(s)	169, 183, 567, 667
ApeKI	GCWGC	4 cut(s)	65, 179, 227, 692
ArsI	GACNNNNNNTTYG	2 cut(s)	445, 477
AsiGI	ACCGGT	1 cut(s)	374
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	3 cut(s)	501, 617, 668
AsuII	TTCGAA	1 cut(s)	441
AvaII	GGWCC	2 cut(s)	501, 617
BamHI	GGATCC	2 cut(s)	338, 711
BanI	GGYRCC	1 cut(s)	680
BanII	GRGCYC	1 cut(s)	141
BauI	CACGAG	1 cut(s)	734
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	4 cut(s)	77, 191, 214, 679
BccI	CCATC	4 cut(s)	40, 230, 395, 704
BceAI	ACGGC	4 cut(s)	5, 170, 473, 608
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	1 cut(s)	12
BfoI	RGCGCY	1 cut(s)	51
BisI	GCNGC	7 cut(s)	66, 180, 183, 228, 286, 684, 693
BlsI	GCNGC	7 cut(s)	67, 181, 184, 229, 287, 685, 694
Bme18I	GGWCC	2 cut(s)	501, 617
BmeRI	GACNNNNNGTC	2 cut(s)	499, 623
BmgT120I	GGNCC	3 cut(s)	501, 617, 668
BmiI	GGNNCC	5 cut(s)	112, 340, 619, 682, 713
BmrI	ACTGGG	1 cut(s)	661
BmsI	GCATC	1 cut(s)	528
BmuI	ACTGGG	1 cut(s)	661
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
Bpu14I	TTCGAA	1 cut(s)	441
BpuEI	CTTGAG	1 cut(s)	347
BsaBI	GATNNNNATC	1 cut(s)	716
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	4 cut(s)	21, 186, 280, 676
BsaWI	WCCGGW	2 cut(s)	113, 374
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 677
Bse118I	RCCGGY	4 cut(s)	107, 167, 374, 569
Bse1I	ACTGG	5 cut(s)	323, 415, 656, 665, 713
Bse3DI	GCAATG	3 cut(s)	15, 522, 687
Bse8I	GATNNNNATC	1 cut(s)	716
BseDI	CCNNGG	4 cut(s)	21, 186, 280, 676
BseJI	GATNNNNATC	1 cut(s)	716
BseLI	CCNNNNNNNGG	2 cut(s)	211, 677
BseMI	GCAATG	3 cut(s)	15, 522, 687
BseMII	CTCAG	3 cut(s)	27, 66, 252
BseNI	ACTGG	5 cut(s)	323, 415, 656, 665, 713
BseRI	GAGGAG	2 cut(s)	350, 665
BseX3I	CGGCCG	1 cut(s)	183
BseXI	GCAGC	4 cut(s)	77, 191, 214, 679
BseYI	CCCAGC	2 cut(s)	327, 601
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	4 cut(s)	171, 185, 569, 669
BshNI	GGYRCC	1 cut(s)	680
BshTI	ACCGGT	1 cut(s)	374
BsiEI	CGRYCG	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	6 cut(s)	108, 114, 168, 375, 507, 570
BslI	CCNNNNNNNGG	2 cut(s)	211, 677
BsmAI	GTCTC	1 cut(s)	278
BsnI	GGCC	4 cut(s)	171, 185, 569, 669
Bso31I	GGTCTC	1 cut(s)	278
Bsp119I	TTCGAA	1 cut(s)	441
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp1407I	TGTACA	1 cut(s)	468
Bsp143I	GATC	3 cut(s)	6, 338, 711
BspANI	GGCC	4 cut(s)	171, 185, 569, 669
BspCNI	CTCAG	3 cut(s)	28, 67, 251
BspLI	GGNNCC	5 cut(s)	112, 340, 619, 682, 713
BspPI	GGATC	4 cut(s)	333, 346, 706, 719
BspT104I	TTCGAA	1 cut(s)	441
BspT107I	GGYRCC	1 cut(s)	680
BspTNI	GGTCTC	1 cut(s)	278
BsrDI	GCAATG	3 cut(s)	15, 522, 687
BsrFI	RCCGGY	4 cut(s)	107, 167, 374, 569
BsrGI	TGTACA	1 cut(s)	468
BsrI	ACTGG	5 cut(s)	323, 415, 656, 665, 713
BssAI	RCCGGY	4 cut(s)	107, 167, 374, 569
BssECI	CCNNGG	4 cut(s)	21, 186, 280, 676
BssMI	GATC	3 cut(s)	6, 338, 711
BssSI	CACGAG	1 cut(s)	734
BssT1I	CCWWGG	1 cut(s)	280
Bst2BI	CACGAG	1 cut(s)	734
Bst4CI	ACNGT	2 cut(s)	475, 587
Bst6I	CTCTTC	1 cut(s)	281
BstAPI	GCANNNNNTGC	1 cut(s)	71
BstAUI	TGTACA	1 cut(s)	468
BstBI	TTCGAA	1 cut(s)	441
BstC8I	GCNNGC	4 cut(s)	169, 352, 356, 646
BstDEI	CTNAG	4 cut(s)	36, 59, 75, 238
BstDSI	CCRYGG	2 cut(s)	21, 186
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	3 cut(s)	9, 341, 714
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	3 cut(s)	6, 338, 711
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	9 cut(s)	62, 71, 188, 227, 428, 533, 575, 689, 692
BstV1I	GCAGC	4 cut(s)	77, 191, 214, 679
BstX2I	RGATCY	2 cut(s)	338, 711
BstYI	RGATCY	2 cut(s)	338, 711
BstZI	CGGCCG	1 cut(s)	183
BsuRI	GGCC	4 cut(s)	171, 185, 569, 669
BtgI	CCRYGG	2 cut(s)	21, 186
BtgZI	GCGATG	2 cut(s)	208, 703
BtsI	GCAGTG	2 cut(s)	438, 612
BtsIMutI	CAGTG	5 cut(s)	141, 438, 480, 612, 649
Cac8I	GCNNGC	4 cut(s)	169, 352, 356, 646
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	4 cut(s)	107, 167, 374, 569
Cfr13I	GGNCC	3 cut(s)	501, 617, 668
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	3 cut(s)	316, 469, 478
CspAI	ACCGGT	1 cut(s)	374
CviAII	CATG	3 cut(s)	248, 423, 639
CviQI	GTAC	3 cut(s)	316, 469, 478
DdeI	CTNAG	4 cut(s)	36, 59, 75, 238
DpnI	GATC	3 cut(s)	8, 340, 713
DpnII	GATC	3 cut(s)	6, 338, 711
DriI	GACNNNNNGTC	2 cut(s)	499, 623
EaeI	YGGCCR	2 cut(s)	183, 567
EagI	CGGCCG	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	281
Eam1105I	GACNNNNNGTC	2 cut(s)	499, 623
EarI	CTCTTC	1 cut(s)	281
EciI	GGCGGA	1 cut(s)	493
Ecl136II	GAGCTC	1 cut(s)	139
EclXI	CGGCCG	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	141
Eco31I	GGTCTC	1 cut(s)	278
Eco47I	GGWCC	2 cut(s)	501, 617
Eco52I	CGGCCG	1 cut(s)	183
Eco53kI	GAGCTC	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	3 cut(s)	251, 426, 642
FaiI	YATR	3 cut(s)	249, 424, 640
FatI	CATG	3 cut(s)	247, 422, 638
FauI	CCCGC	3 cut(s)	172, 265, 628
FblI	GTMKAC	3 cut(s)	407, 492, 657
Fnu4HI	GCNGC	7 cut(s)	66, 180, 183, 228, 286, 684, 693
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	7 cut(s)	66, 180, 183, 228, 286, 684, 693
FspBI	CTAG	1 cut(s)	12
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	7 cut(s)	66, 180, 183, 228, 286, 684, 693
GsaI	CCCAGC	2 cut(s)	331, 605
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	4 cut(s)	171, 185, 569, 669
HapII	CCGG	6 cut(s)	108, 114, 168, 375, 507, 570
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	3 cut(s)	251, 426, 642
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HincII	GTYRAC	3 cut(s)	253, 408, 493
HindII	GTYRAC	3 cut(s)	253, 408, 493
HpaI	GTTAAC	1 cut(s)	253
HpaII	CCGG	6 cut(s)	108, 114, 168, 375, 507, 570
Hpy166II	GTNNAC	8 cut(s)	253, 380, 408, 469, 471, 478, 493, 658
Hpy188I	TCNGA	3 cut(s)	37, 338, 617
Hpy188III	TCNNGA	2 cut(s)	43, 448
Hpy8I	GTNNAC	8 cut(s)	253, 380, 408, 469, 471, 478, 493, 658
Hpy99I	CGWCG	3 cut(s)	56, 494, 629
HpyAV	CCTTC	1 cut(s)	466
HpyCH4III	ACNGT	2 cut(s)	475, 587
HpyCH4V	TGCA	2 cut(s)	230, 527
HpyF10VI	GCNNNNNNNGC	9 cut(s)	62, 71, 188, 227, 428, 533, 575, 689, 692
HpyF3I	CTNAG	4 cut(s)	36, 59, 75, 238
Hsp92II	CATG	3 cut(s)	251, 426, 642
HspAI	GCGC	1 cut(s)	48
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
KspAI	GTTAAC	1 cut(s)	253
Kzo9I	GATC	3 cut(s)	6, 338, 711
LmnI	GCTCC	4 cut(s)	45, 152, 363, 419
Lsp1109I	GCAGC	4 cut(s)	77, 191, 214, 679
LweI	GCATC	1 cut(s)	528
MaeI	CTAG	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	3 cut(s)	8, 340, 713
MboI	GATC	3 cut(s)	6, 338, 711
MboII	GAAGA	1 cut(s)	268
MflI	RGATCY	2 cut(s)	338, 711
MhlI	GDGCHC	1 cut(s)	141
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	4 cut(s)	101, 371, 686, 725
MroNI	GCCGGC	1 cut(s)	167
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	20
MspA1I	CMGCKG	3 cut(s)	182, 260, 633
MspI	CCGG	6 cut(s)	108, 114, 168, 375, 507, 570
MwoI	GCNNNNNNNGC	9 cut(s)	62, 71, 188, 227, 428, 533, 575, 689, 692
NaeI	GCCGGC	1 cut(s)	169
NdeII	GATC	3 cut(s)	6, 338, 711
NgoMIV	GCCGGC	1 cut(s)	167
NlaIII	CATG	3 cut(s)	251, 426, 642
NlaIV	GGNNCC	5 cut(s)	112, 340, 619, 682, 713
NmeAIII	GCCGAG	2 cut(s)	160, 645
NmuCI	GTSAC	1 cut(s)	262
NspV	TTCGAA	1 cut(s)	441
PcsI	WCGNNNNNNNCGW	3 cut(s)	48, 486, 621
PdiI	GCCGGC	1 cut(s)	169
PinAI	ACCGGT	1 cut(s)	374
PkrI	GCNGC	7 cut(s)	67, 181, 184, 229, 287, 685, 694
Psp124BI	GAGCTC	1 cut(s)	141
PspFI	CCCAGC	2 cut(s)	327, 601
PspN4I	GGNNCC	5 cut(s)	112, 340, 619, 682, 713
PspPI	GGNCC	3 cut(s)	501, 617, 668
PsuI	RGATCY	2 cut(s)	338, 711
PvuII	CAGCTG	1 cut(s)	633
RsaI	GTAC	3 cut(s)	317, 470, 479
RsaNI	GTAC	3 cut(s)	316, 469, 478
RseI	CAYNNNNRTG	1 cut(s)	20
SacI	GAGCTC	1 cut(s)	141
SalI	GTCGAC	2 cut(s)	406, 491
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	7 cut(s)	66, 180, 183, 228, 286, 684, 693
Sau3AI	GATC	3 cut(s)	6, 338, 711
Sau96I	GGNCC	3 cut(s)	501, 617, 668
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	8 cut(s)	70, 130, 141, 157, 333, 458, 503, 635
SfaNI	GCATC	1 cut(s)	528
SfuI	TTCGAA	1 cut(s)	441
SinI	GGWCC	2 cut(s)	501, 617
SmiMI	CAYNNNNRTG	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
SspMI	CTAG	1 cut(s)	12
SstI	GAGCTC	1 cut(s)	141
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	2 cut(s)	475, 587
TaqI	TCGA	3 cut(s)	407, 441, 492
TaqII	GACCGA	1 cut(s)	260
TatI	WGTACW	2 cut(s)	315, 468
TauI	GCSGC	3 cut(s)	185, 288, 686
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	5 cut(s)	148, 438, 480, 612, 656
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	4 cut(s)	65, 179, 227, 692
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	2 cut(s)	535, 611
TspGWI	ACGGA	1 cut(s)	331
TspRI	CASTG	5 cut(s)	148, 438, 480, 612, 656
VpaK11BI	GGWCC	2 cut(s)	501, 617
XmiI	GTMKAC	3 cut(s)	407, 492, 657
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.