Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003756

Physical Location & Seq

Genomic Coordinates Reverse (-)

9072521 .. 9075666

Gene Structure 3146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0112300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3117 bp

ATGACAATTCCTTTGTTCTCATGCCATTTCTTGATACTCATTTACTATGTTTCACTCAGTTTCCATGTACTGGTGGTCTCTGGCCAATGTTCCAGCAACCAGCAGCAATCTTTGCTGCTCCAATTGAAGAACAACCTCAATTTCACCTCTGCATTATCCACAAAGCTGGTGAAGTGGAACAATGTCTCTGATTATTGTTCTTGGGAAGGTGTCTCCTGCAAAGGAGGTTGTGTTACCCATCTCGACTTGAGCTGGGAATCGATTTCAGGTGGACTTGATAATTCAAGTGCTCTTTTCAGTCTGCAGTACATCGAACACCTGAATTTGGCCTATAATAACTTCAATTATACTCCGATTCCATCCGAGTTCAACAAGCTAGCCAGTTTGAGTTATTTGAATCTGTCAAATGCTGGCTTTTCCGGGCAGATTCCCATTGAGATTTCGCAGTTGACAAGGTTGGTGTTTCTTGATTTATCTACCTTCTACTTTCCCGGAACTCCTGCACTGCAACTTAAGCATCCAGATTTGAATTTGCTTATTGGAAACCTTTCGGAGATAATCGAACTTCATCTTGATGGTGTGAGCATATCAGCACAGGGGGCTCAGTGGGGTCAAGCAATATCATCTTCACTGCCAAACCTGAGGGTGTTGAGCTTGTCCAGTTGCAATCTTTCAGGCCCAATTGATACTTCCTTACTGAAGCTTCAATCACTCTCAGAAATTCGTATGGAGAGTAACAATCTGTCTACTCCAATTCCAGAGTTCTTGTCAAATTTCACAAATTTGACTTCCTTACGCCTCATGAATTCAGGGTTACATGGTACATTCCCAGAGAAAATCTTTCAGGTACCTACACTGCAGATTATCGACTTAATTGGCAATCAAGAGCTTCGAGGTTCGTTGCCAGACTTTCCGAAGAATGGAGCTCTTCGGTCCCTGTTCCTAGCCAGGACAAATTTTTCAGGGTTATTGCCGGAATCTATTGGAAACCTCAAGATGTTGTCCAAAGTAGATCTTTCCCTTTGCAGCTTCACGGGACCAATCCCAAAGTCAATGGAAAGCCTTACGGGACTGATTTATGTGGACATGTCAGCGAACAAGCTTAATGGTTCAGTTCCATTGTTGAGTATGGCCAAGAATCTGACCAACATAAATCTTTCGTACAATGAGCTAACAGTGTCCCTGTTTTCCCTTCCCTTGTTGCAGAAACTACAGCTTTCCAACAATCAGTTCTCTGGTCAGTTGCTTGAATTTGCCAATATCTCTCCACTGGACACCGTTGATTTGAGTAGCAACAATTTGGAAGGAACGGTACCCATGTCTATCTTTAATCTCCGAGGGCTTAAAATTCTCTCACTTTCTTCCAACAACTTCAGTGGCTCCTTCCCTCTTAACAGTATTCAACAGCTCAAAAATCTTTCCAGTCTTGATCTTTCATACAATAGCTTGTCAATTAGTTACAATAGTACAAATTCCTCAGAGTCTTCCTTTCCTAATATTACCACATTAAAATTGGCTTCTGGGCAGTTGAGAACATTTCCTAATTTCTTGAGAGATCAATCCAGATTAAACTATTTGGACCTTTCACAGAACCAGATTCATGGAGAGATACCCAACTGGATTTGGAAGCTCAGTAATCTATCACAACTAAATCTGTCTTGCAACTCCCTTGTAACTCTAGAAGGTCCTTTAACCAATCTTGCTTCTAGTTTGTCTATGGTTGACCTTCATTCCAACCGGCTTCAGGGTCACATTCCAATATTTCCACCACTTGCCACTTATCTGGATTACTCAAGAAATAATTTCAGCTCTAGCATATGGGATGGCATTGGTGATTTCCTTAATTACACTGTTTTCTTGTCTCTTTCAAGCAACAAAATTGAGGGGAGCATTCCAGGATCAATATGCAAAGCGACAAATCTTCAGGTTCTTGATCTGTCCAATAATTCTTTGGGTGGCTCCATTCCCACATGCTTGACTGCAACAGGAGGAACTCTTGTGGTACTCAATTTAAGGAGAAATAAACTTGCTGGCAGAATTCCTGATAGATTTCCTGGCCATTGTACTTTGAAAACTCTAGACTTCAATGGAAATCGTTTAGAAGGTCAGTTTCCAAAATCTCTAGCCAATTGCACGGTGTTAGAAGTTTTGAACCTTGGAAACAATCAGATAATGGATACATTTCCTTGCTTGTTGAAGAACATATCCACCTTGCGTGTCCTTGTTTTGCGATCAAACAGATTTTATGGACGCTATGGATGTACCAACACCACTGGTGCCTGGCCAATGCTTCAAATTGTTGACATAGCACACAACAACTTTAGTGGTGAAATACCAGGAAGAAGCTTGACTACATGGCAAGCAATGACGGGCAATGAAGATGCCCAACCATCAATCGATCATCTGCAATTTCCTGTCTTTAGATTCAATGACGAGCTAAATTATCAGGATGCTATAACAGTTACCACCAAAGGACTAGAGATGGAGTTGGTCAAGATTCTAACTTTCTTCACCTCTATTGACCTCTCATGCAACAATTTCAATGGATCAATCCCAGCACAAGTGGGACAACTGAAAGCACTCCATGGCCTCAACTTGTCCAATAATGCTCTCACAGGCGCTATCCCATCATCATTGGGTAACCTAACACAACTCGAGTCCTTGGACCTTTCGAACAACAGCCTGAGCGGGCCAATTCCACCACAGCTTAAAGTGCTCACTTTCCTGTCATTCCTGAATGTCTCAAATAATCAACTGGTCGGGATGATCCCAGCCAGTACCCAGTTTTCAACATTTCCACCAACTTCCTTTGCAGGTAATAAGGGATTATGCGGGCCACCTTTACTGCTAAAATGCAGTAATTCCAGTGACTCACCAGATGCACCATCCAAGGACGAAAACAAAGATTGGGGAATTAAATGGGAACTTATCAGTGTTGAAATTGGATTTACATGTGGGTTTGGAATTGCCATCGCATCACTTTTCTTTTGCAAGAGATGGAGGATATGGTATTACAGAGTTATGCAGAGTATCCTACTGAAGATATTCCCTAAGCTAGAAGAAAGATTTGGAGATCACAGAAGGCATGTTTACATAAATCCAAGTTGGAGGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0006855 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009705 GO:0009941 GO:0015204 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0015893 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042221 GO:0042493 GO:0042807 GO:0042886 GO:0042887 GO:0042891 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0080170 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

1038

Amino Acids

114.38

Weight (kDa)

6.95

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	33 - 73	5e-07	Leucine rich repeat N-terminal domain
LRR_8	PF13855	424 - 483	2.5e-07	Leucine rich repeat
LRR_8	PF13855	838 - 895	1.7e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36830 AT3G26520
fragaria_vesca	FvH4_3g34940 FvH4_3g34940 FvH4_6g16770 FvH4_7g03120
malus_domestica	MD03G1100200.v1.1
prunus_persica	Prupe.6G085200_v2.0.a1 Prupe.7G125900_v2.0.a1
pyrus_communis	pycom03g08240 pycom11g09610 pycom12g10750
rosa_chinensis	RchiOBHm_Chr3g0470701 RchiOBHm_Chr5g0062791
rosa_laevigata	RLG00000024246 RLG00000035580
rosa_multiflora	Rmu_co8269841.1_g000001 Rmu_sc0002790.1_g000002 Rmu_sc0006168.1_g000020 Rmu_ssc0000472.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017830 Rroxscaffold_6G00410570
rosa_rugosa	Rorug03G0112300 Rorug05G0351600
rosa_samantha	Rh3AG161800 Rh3BG186400 Rh3CG176700 Rh3DG188800 Rh5AG412900 Rh5BG426800 Rh5CG450700 Rh5DG440700
rosa_wichuraiana	Rw0G004640 Rw5G038800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2804
Acc65I	GGTACC	2 cut(s)	847, 1312
AccB1I	GGYRCC	3 cut(s)	847, 1312, 2276
AccB7I	CCANNNNNTGG	1 cut(s)	70
AccBSI	CCGCTC	1 cut(s)	2688
AccI	GTMKAC	1 cut(s)	746
AciI	CCGC	2 cut(s)	2688, 2832
AclWI	GGATC	3 cut(s)	1906, 2554, 2761
AcoI	YGGCCR	4 cut(s)	82, 1131, 2056, 2282
AcuI	CTGAAG	5 cut(s)	719, 1357, 1727, 1907, 3059
AfiI	CCNNNNNNNGG	4 cut(s)	70, 325, 920, 1744
AflII	CTTAAG	1 cut(s)	512
AflIII	ACRYGT	2 cut(s)	1086, 2951
AjnI	CCWGG	5 cut(s)	947, 1894, 2053, 2279, 2335
AjuI	GAANNNNNNNTTGG	6 cut(s)	673, 705, 1214, 1246, 3051, 3083
Alw21I	GWGCWC	3 cut(s)	292, 928, 2718
Alw26I	GTCTC	5 cut(s)	82, 190, 217, 1866, 2746
AlwI	GGATC	3 cut(s)	1906, 2554, 2761
Ama87I	CYCGRG	1 cut(s)	2654
AoxI	GGCC	9 cut(s)	82, 327, 676, 1131, 2056, 2282, 2587, 2690, 2834
ApeKI	GCWGC	3 cut(s)	103, 115, 1026
ArsI	GACNNNNNNTTYG	1 cut(s)	27
Asp700I	GAANNNNTTC	2 cut(s)	547, 3044
Asp718I	GGTACC	2 cut(s)	847, 1312
AspLEI	GCGC	1 cut(s)	2621
AspS9I	GGNCC	8 cut(s)	677, 933, 1037, 1579, 1685, 2665, 2690, 2834
AsuC2I	CCSGG	2 cut(s)	421, 492
AsuHPI	GGTGA	6 cut(s)	136, 181, 1844, 2339, 2503, 2865
AsuII	TTCGAA	1 cut(s)	2672
AsuNHI	GCTAGC	1 cut(s)	376
AvaI	CYCGRG	1 cut(s)	2654
AvaII	GGWCC	5 cut(s)	933, 1037, 1579, 1685, 2665
AxyI	CCTNAGG	1 cut(s)	641
BaeI	ACNNNNGTAYC	2 cut(s)	1304, 1337
BalI	TGGCCA	4 cut(s)	84, 1133, 2058, 2284
BanI	GGYRCC	3 cut(s)	847, 1312, 2276
BanII	GRGCYC	2 cut(s)	604, 928
BarI	GAAGNNNNNNTAC	4 cut(s)	1296, 1328, 2335, 2367
BbsI	GAAGAC	1 cut(s)	1476
Bbv12I	GWGCWC	3 cut(s)	292, 928, 2718
BbvI	GCAGC	3 cut(s)	102, 115, 1038
BciT130I	CCWGG	5 cut(s)	949, 1896, 2055, 2281, 2337
BciVI	GTATCC	2 cut(s)	2170, 3041
BcnI	CCSGG	2 cut(s)	421, 492
BcoDI	GTCTC	5 cut(s)	82, 190, 217, 1866, 2746
BfaI	CTAG	9 cut(s)	377, 944, 1679, 1707, 1812, 2078, 2123, 2477, 3056
BfmI	CTRYAG	3 cut(s)	302, 857, 1211
BfoI	RGCGCY	1 cut(s)	2622
BfrI	CTTAAG	1 cut(s)	512
BfuAI	ACCTGC	1 cut(s)	2804
BfuI	GTATCC	2 cut(s)	2170, 3041
BglII	AGATCT	1 cut(s)	1012
BisI	GCNGC	3 cut(s)	104, 116, 1027
BlsI	GCNGC	3 cut(s)	105, 117, 1028
Bme1390I	CCNGG	7 cut(s)	421, 492, 949, 1896, 2055, 2281, 2337
Bme18I	GGWCC	5 cut(s)	933, 1037, 1579, 1685, 2665
BmeT110I	CYCGRG	1 cut(s)	2654
BmgT120I	GGNCC	8 cut(s)	677, 933, 1037, 1579, 1685, 2665, 2690, 2834
BmiI	GGNNCC	7 cut(s)	849, 935, 1038, 1314, 1381, 1960, 2278
BmrFI	CCNGG	7 cut(s)	421, 492, 949, 1896, 2055, 2281, 2337
BmrI	ACTGGG	1 cut(s)	2776
BmsI	GCATC	5 cut(s)	526, 2371, 2440, 2869, 2984
BmtI	GCTAGC	1 cut(s)	380
BmuI	ACTGGG	1 cut(s)	2776
BpiI	GAAGAC	1 cut(s)	1476
Bpu10I	CCTNAGC	2 cut(s)	2684, 3051
Bpu14I	TTCGAA	1 cut(s)	2672
BpuEI	CTTGAG	4 cut(s)	268, 977, 1570, 1777
BpuMI	CCSGG	2 cut(s)	421, 492
Bsa29I	ATCGAT	2 cut(s)	260, 2397
BsaI	GGTCTC	1 cut(s)	82
BsaJI	CCNNGG	5 cut(s)	1336, 2155, 2584, 2661, 2889
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bsc4I	CCNNNNNNNGG	4 cut(s)	70, 325, 920, 1744
Bse118I	RCCGGY	1 cut(s)	1737
Bse21I	CCTNAGG	1 cut(s)	641
Bse3DI	GCAATG	2 cut(s)	2370, 2380
BseBI	CCWGG	5 cut(s)	949, 1896, 2055, 2281, 2337
BseCI	ATCGAT	2 cut(s)	260, 2397
BseDI	CCNNGG	5 cut(s)	1336, 2155, 2584, 2661, 2889
BseGI	GGATG	7 cut(s)	359, 517, 1828, 2264, 2455, 2769, 2885
BseLI	CCNNNNNNNGG	4 cut(s)	70, 325, 920, 1744
BseMI	GCAATG	2 cut(s)	2370, 2380
BseMII	CTCAG	7 cut(s)	70, 617, 632, 729, 1491, 1645, 2675
BseXI	GCAGC	3 cut(s)	102, 115, 1038
BseYI	CCCAGC	3 cut(s)	252, 2554, 2770
BsgI	GTGCAG	1 cut(s)	486
BshFI	GGCC	9 cut(s)	84, 329, 678, 1133, 2058, 2284, 2589, 2692, 2836
BshNI	GGYRCC	3 cut(s)	847, 1312, 2276
BshVI	ATCGAT	2 cut(s)	260, 2397
BsiHKAI	GWGCWC	3 cut(s)	292, 928, 2718
BsiHKCI	CYCGRG	1 cut(s)	2654
BsiSI	CCGG	4 cut(s)	420, 492, 974, 1738
BslFI	GGGAC	5 cut(s)	919, 1050, 1083, 1165, 2580
BslI	CCNNNNNNNGG	4 cut(s)	70, 325, 920, 1744
BsmAI	GTCTC	5 cut(s)	82, 190, 217, 1866, 2746
BsmFI	GGGAC	5 cut(s)	919, 1050, 1083, 1165, 2580
BsmI	GAATGC	1 cut(s)	1890
BsnI	GGCC	9 cut(s)	84, 329, 678, 1133, 2058, 2284, 2589, 2692, 2836
Bso31I	GGTCTC	1 cut(s)	82
BsoBI	CYCGRG	1 cut(s)	2654
Bsp119I	TTCGAA	1 cut(s)	2672
Bsp1286I	GDGCHC	4 cut(s)	292, 604, 928, 2718
Bsp19I	CCATGG	1 cut(s)	2584
BspACI	CCGC	2 cut(s)	2688, 2832
BspANI	GGCC	9 cut(s)	84, 329, 678, 1133, 2058, 2284, 2589, 2692, 2836
BspCNI	CTCAG	7 cut(s)	69, 616, 633, 728, 1490, 1644, 2676
BspDI	ATCGAT	2 cut(s)	260, 2397
BspHI	TCATGA	1 cut(s)	801
BspLI	GGNNCC	7 cut(s)	849, 935, 1038, 1314, 1381, 1960, 2278
BspMAI	CTGCAG	2 cut(s)	306, 861
BspMI	ACCTGC	1 cut(s)	2804
BspOI	GCTAGC	1 cut(s)	380
BspPI	GGATC	3 cut(s)	1906, 2554, 2761
BspQI	GCTCTTC	1 cut(s)	933
BspT104I	TTCGAA	1 cut(s)	2672
BspT107I	GGYRCC	3 cut(s)	847, 1312, 2276
BspTI	CTTAAG	1 cut(s)	512
BspTNI	GGTCTC	1 cut(s)	82
BsrBI	CCGCTC	1 cut(s)	2688
BsrDI	GCAATG	2 cut(s)	2370, 2380
BsrFI	RCCGGY	1 cut(s)	1737
BssAI	RCCGGY	1 cut(s)	1737
BssECI	CCNNGG	5 cut(s)	1336, 2155, 2584, 2661, 2889
BssT1I	CCWWGG	4 cut(s)	2155, 2584, 2661, 2889
Bst2UI	CCWGG	5 cut(s)	949, 1896, 2055, 2281, 2337
Bst4CI	ACNGT	7 cut(s)	1177, 1279, 1312, 1397, 1852, 2137, 2461
Bst6I	CTCTTC	1 cut(s)	933
BstAFI	CTTAAG	1 cut(s)	512
BstAPI	GCANNNNNTGC	1 cut(s)	112
BstBI	TTCGAA	1 cut(s)	2672
BstC8I	GCNNGC	6 cut(s)	378, 412, 2032, 2361, 2690, 2834
BstDEI	CTNAG	8 cut(s)	56, 603, 641, 715, 1477, 1631, 2684, 3051
BstDSI	CCRYGG	1 cut(s)	2584
BstEII	GGTNACC	1 cut(s)	2639
BstF5I	GGATG	7 cut(s)	359, 517, 1828, 2264, 2455, 2769, 2885
BstH2I	RGCGCY	1 cut(s)	2622
BstHHI	GCGC	1 cut(s)	2621
BstMAI	GTCTC	5 cut(s)	82, 190, 217, 1866, 2746
BstMWI	GCNNNNNNNGC	4 cut(s)	112, 514, 599, 2713
BstNI	CCWGG	5 cut(s)	949, 1896, 2055, 2281, 2337
BstNSI	RCATGY	4 cut(s)	1090, 1974, 2955, 3089
BstPI	GGTNACC	1 cut(s)	2639
BstSCI	CCNGG	7 cut(s)	419, 490, 947, 1894, 2053, 2279, 2335
BstSFI	CTRYAG	3 cut(s)	302, 857, 1211
BstV1I	GCAGC	3 cut(s)	102, 115, 1038
BstV2I	GAAGAC	1 cut(s)	1476
BstX2I	RGATCY	1 cut(s)	1012
BstXI	CCANNNNNNTGG	3 cut(s)	166, 1601, 1783
BstYI	RGATCY	1 cut(s)	1012
Bsu15I	ATCGAT	2 cut(s)	260, 2397
Bsu36I	CCTNAGG	1 cut(s)	641
BsuI	GTATCC	2 cut(s)	2170, 3041
BsuRI	GGCC	9 cut(s)	84, 329, 678, 1133, 2058, 2284, 2589, 2692, 2836
BsuTUI	ATCGAT	2 cut(s)	260, 2397
BtgI	CCRYGG	1 cut(s)	2584
BtgZI	GCGATG	1 cut(s)	2956
BtsCI	GGATG	7 cut(s)	359, 517, 1828, 2264, 2455, 2769, 2885
BtsI	GCAGTG	3 cut(s)	503, 629, 854
BveI	ACCTGC	1 cut(s)	2804
Cac8I	GCNNGC	6 cut(s)	378, 412, 2032, 2361, 2690, 2834
CciI	TCATGA	1 cut(s)	801
CfoI	GCGC	1 cut(s)	2621
Cfr10I	RCCGGY	1 cut(s)	1737
Cfr13I	GGNCC	8 cut(s)	677, 933, 1037, 1579, 1685, 2665, 2690, 2834
ClaI	ATCGAT	2 cut(s)	260, 2397
CseI	GACGC	1 cut(s)	2259
CspCI	CAANNNNNGTGG	4 cut(s)	1357, 1392, 2305, 2340
DdeI	CTNAG	8 cut(s)	56, 603, 641, 715, 1477, 1631, 2684, 3051
EaeI	YGGCCR	4 cut(s)	82, 1131, 2056, 2282
Eam1104I	CTCTTC	1 cut(s)	933
EarI	CTCTTC	1 cut(s)	933
Ecl136II	GAGCTC	1 cut(s)	926
Eco130I	CCWWGG	4 cut(s)	2155, 2584, 2661, 2889
Eco24I	GRGCYC	2 cut(s)	604, 928
Eco31I	GGTCTC	1 cut(s)	82
Eco47I	GGWCC	5 cut(s)	933, 1037, 1579, 1685, 2665
Eco53kI	GAGCTC	1 cut(s)	926
Eco57I	CTGAAG	5 cut(s)	719, 1357, 1727, 1907, 3059
Eco81I	CCTNAGG	1 cut(s)	641
Eco88I	CYCGRG	1 cut(s)	2654
Eco91I	GGTNACC	1 cut(s)	2639
EcoICRI	GAGCTC	1 cut(s)	926
EcoO109I	RGGNCCY	1 cut(s)	1685
EcoO65I	GGTNACC	1 cut(s)	2639
EcoRI	GAATTC	2 cut(s)	805, 2037
EcoRII	CCWGG	5 cut(s)	947, 1894, 2053, 2279, 2335
EcoT14I	CCWWGG	4 cut(s)	2155, 2584, 2661, 2889
EcoT38I	GRGCYC	2 cut(s)	604, 928
ErhI	CCWWGG	4 cut(s)	2155, 2584, 2661, 2889
FalI	AAGNNNNNCTT	2 cut(s)	999, 1031
FaqI	GGGAC	5 cut(s)	919, 1050, 1083, 1165, 2580
FauI	CCCGC	2 cut(s)	2681, 2825
FauNDI	CATATG	1 cut(s)	1817
FblI	GTMKAC	1 cut(s)	746
Fnu4HI	GCNGC	3 cut(s)	104, 116, 1027
FokI	GGATG	7 cut(s)	346, 504, 1835, 2271, 2462, 2776, 2872
FriOI	GRGCYC	2 cut(s)	604, 928
Fsp4HI	GCNGC	3 cut(s)	104, 116, 1027
FspBI	CTAG	9 cut(s)	377, 944, 1679, 1707, 1812, 2078, 2123, 2477, 3056
GlaI	GCGC	1 cut(s)	2620
GluI	GCNGC	3 cut(s)	104, 116, 1027
GsaI	CCCAGC	3 cut(s)	256, 2558, 2774
HaeII	RGCGCY	1 cut(s)	2622
HaeIII	GGCC	9 cut(s)	84, 329, 678, 1133, 2058, 2284, 2589, 2692, 2836
HapII	CCGG	4 cut(s)	420, 492, 974, 1738
HgaI	GACGC	1 cut(s)	2259
HhaI	GCGC	1 cut(s)	2621
Hin6I	GCGC	1 cut(s)	2619
HinP1I	GCGC	1 cut(s)	2619
HincII	GTYRAC	3 cut(s)	450, 1723, 2302
HindII	GTYRAC	3 cut(s)	450, 1723, 2302
HindIII	AAGCTT	3 cut(s)	701, 1100, 2344
HpaII	CCGG	4 cut(s)	420, 492, 974, 1738
HphI	GGTGA	6 cut(s)	136, 181, 1844, 2339, 2503, 2865
Hpy166II	GTNNAC	7 cut(s)	272, 450, 747, 1084, 1723, 2302, 3091
Hpy8I	GTNNAC	7 cut(s)	272, 450, 747, 1084, 1723, 2302, 3091
HpyAV	CCTTC	9 cut(s)	200, 490, 1202, 1298, 1393, 1676, 1736, 2096, 3075
HpyCH4III	ACNGT	7 cut(s)	1177, 1279, 1312, 1397, 1852, 2137, 2461
HpyF10VI	GCNNNNNNNGC	4 cut(s)	112, 514, 599, 2713
HpyF3I	CTNAG	8 cut(s)	56, 603, 641, 715, 1477, 1631, 2684, 3051
HspAI	GCGC	1 cut(s)	2619
KpnI	GGTACC	2 cut(s)	851, 1316
LguI	GCTCTTC	1 cut(s)	933
LmnI	GCTCC	5 cut(s)	123, 923, 1385, 1887, 1964
Lsp1109I	GCAGC	3 cut(s)	102, 115, 1038
LweI	GCATC	5 cut(s)	526, 2371, 2440, 2869, 2984
MaeI	CTAG	9 cut(s)	377, 944, 1679, 1707, 1812, 2078, 2123, 2477, 3056
MaeIII	GTNAC	9 cut(s)	232, 734, 813, 1457, 1672, 1748, 2461, 2639, 2867
MbiI	CCGCTC	1 cut(s)	2688
MfeI	CAATTG	3 cut(s)	122, 681, 2128
MflI	RGATCY	1 cut(s)	1012
MhlI	GDGCHC	4 cut(s)	292, 604, 928, 2718
MlsI	TGGCCA	4 cut(s)	84, 1133, 2058, 2284
MluNI	TGGCCA	4 cut(s)	84, 1133, 2058, 2284
MlyI	GAGTC	3 cut(s)	1490, 2666, 2864
MmeI	TCCRAC	4 cut(s)	1245, 1389, 1758, 3086
Mox20I	TGGCCA	4 cut(s)	84, 1133, 2058, 2284
MroXI	GAANNNNTTC	2 cut(s)	547, 3044
MscI	TGGCCA	4 cut(s)	84, 1133, 2058, 2284
MslI	CAYNNNNRTG	1 cut(s)	573
Msp20I	TGGCCA	4 cut(s)	84, 1133, 2058, 2284
MspCI	CTTAAG	1 cut(s)	512
MspI	CCGG	4 cut(s)	420, 492, 974, 1738
MspR9I	CCNGG	7 cut(s)	421, 492, 949, 1896, 2055, 2281, 2337
MunI	CAATTG	3 cut(s)	122, 681, 2128
Mva1269I	GAATGC	1 cut(s)	1890
MvaI	CCWGG	5 cut(s)	949, 1896, 2055, 2281, 2337
MwoI	GCNNNNNNNGC	4 cut(s)	112, 514, 599, 2713
NciI	CCSGG	2 cut(s)	421, 492
NcoI	CCATGG	1 cut(s)	2584
NdeI	CATATG	1 cut(s)	1817
NheI	GCTAGC	1 cut(s)	376
NlaIV	GGNNCC	7 cut(s)	849, 935, 1038, 1314, 1381, 1960, 2278
NmuCI	GTSAC	2 cut(s)	1748, 2867
NspI	RCATGY	4 cut(s)	1090, 1974, 2955, 3089
NspV	TTCGAA	1 cut(s)	2672
PaeR7I	CTCGAG	1 cut(s)	2654
PagI	TCATGA	1 cut(s)	801
PciI	ACATGT	2 cut(s)	1086, 2951
PciSI	GCTCTTC	1 cut(s)	933
PctI	GAATGC	1 cut(s)	1890
PdmI	GAANNNNTTC	2 cut(s)	547, 3044
PfeI	GAWTC	9 cut(s)	257, 355, 397, 427, 977, 1138, 1597, 2424, 2497
PflMI	CCANNNNNTGG	1 cut(s)	70
PfoI	TCCNGGA	2 cut(s)	490, 1894
PkrI	GCNGC	3 cut(s)	105, 117, 1028
PleI	GAGTC	3 cut(s)	1489, 2665, 2864
PpsI	GAGTC	3 cut(s)	1489, 2665, 2864
PpuMI	RGGWCCY	1 cut(s)	1685
PscI	ACATGT	2 cut(s)	1086, 2951
Psp124BI	GAGCTC	1 cut(s)	928
Psp5II	RGGWCCY	1 cut(s)	1685
Psp6I	CCWGG	5 cut(s)	947, 1894, 2053, 2279, 2335
PspEI	GGTNACC	1 cut(s)	2639
PspFI	CCCAGC	3 cut(s)	252, 2554, 2770
PspGI	CCWGG	5 cut(s)	947, 1894, 2053, 2279, 2335
PspN4I	GGNNCC	7 cut(s)	849, 935, 1038, 1314, 1381, 1960, 2278
PspPI	GGNCC	8 cut(s)	677, 933, 1037, 1579, 1685, 2665, 2690, 2834
PspPPI	RGGWCCY	1 cut(s)	1685
PspXI	VCTCGAGB	1 cut(s)	2654
PstI	CTGCAG	2 cut(s)	306, 861
PsuI	RGATCY	1 cut(s)	1012
RseI	CAYNNNNRTG	1 cut(s)	573
SacI	GAGCTC	1 cut(s)	928
SapI	GCTCTTC	1 cut(s)	933
SatI	GCNGC	3 cut(s)	104, 116, 1027
Sau96I	GGNCC	8 cut(s)	677, 933, 1037, 1579, 1685, 2665, 2690, 2834
SchI	GAGTC	3 cut(s)	1490, 2666, 2864
ScrFI	CCNGG	7 cut(s)	421, 492, 949, 1896, 2055, 2281, 2337
SduI	GDGCHC	4 cut(s)	292, 604, 928, 2718
SfaNI	GCATC	5 cut(s)	526, 2371, 2440, 2869, 2984
SfcI	CTRYAG	3 cut(s)	302, 857, 1211
Sfr274I	CTCGAG	1 cut(s)	2654
SfuI	TTCGAA	1 cut(s)	2672
SinI	GGWCC	5 cut(s)	933, 1037, 1579, 1685, 2665
SlaI	CTCGAG	1 cut(s)	2654
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	6 cut(s)	247, 512, 992, 1549, 1792, 2654
SmoI	CTYRAG	6 cut(s)	247, 512, 992, 1549, 1792, 2654
SsiI	CCGC	2 cut(s)	2688, 2832
SspI	AATATT	2 cut(s)	1498, 1761
SspMI	CTAG	9 cut(s)	377, 944, 1679, 1707, 1812, 2078, 2123, 2477, 3056
SstI	GAGCTC	1 cut(s)	928
StyD4I	CCNGG	7 cut(s)	419, 490, 947, 1894, 2053, 2279, 2335
StyI	CCWWGG	4 cut(s)	2155, 2584, 2661, 2889
TaaI	ACNGT	7 cut(s)	1177, 1279, 1312, 1397, 1852, 2137, 2461
TaqI	TCGA	9 cut(s)	243, 260, 312, 561, 867, 892, 2397, 2655, 2672
TaqII	GACCGA	1 cut(s)	921
TatI	WGTACW	4 cut(s)	67, 306, 1466, 2063
TfiI	GAWTC	9 cut(s)	257, 355, 397, 427, 977, 1138, 1597, 2424, 2497
TseFI	GTSAC	2 cut(s)	1748, 2867
TseI	GCWGC	3 cut(s)	103, 115, 1026
Tsp45I	GTSAC	2 cut(s)	1748, 2867
TspDTI	ATGAA	6 cut(s)	557, 818, 1425, 1589, 1718, 2391
Van91I	CCANNNNNTGG	1 cut(s)	70
Vha464I	CTTAAG	1 cut(s)	512
VpaK11BI	GGWCC	5 cut(s)	933, 1037, 1579, 1685, 2665
XbaI	TCTAGA	2 cut(s)	1678, 2077
XceI	RCATGY	4 cut(s)	1090, 1974, 2955, 3089
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1510, 1948
XhoI	CTCGAG	1 cut(s)	2654
XmiI	GTMKAC	1 cut(s)	746
XmnI	GAANNNNTTC	2 cut(s)	547, 3044
XspI	CTAG	9 cut(s)	377, 944, 1679, 1707, 1812, 2078, 2123, 2477, 3056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.