Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8269841.1

Orthogroup ID

OG0003756

Physical Location & Seq

Genomic Coordinates Reverse (-)

8 .. 826

Gene Structure 819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8269841.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

gaggatacttaccaccctgacgccctcaaggccgggcttgccgagttcatctccactctcatcttcgtcttcgccggcgaaggctccggcatggccttcaacaaactcaccgacaacggctccaccactcccgccggactcgtcgccgctgccctagctcacgcctttggtctttttgtcgccgtcgcagtcgccgccaacatctccggcggacacgtcaaccccgccgtcaccttcggcgccttcgtcggaggtaacatctctctcctacgtggcatcctctactgggtcgctcagctcctcggatccaccgtcgcttgcttgcttctcaagttcgccaccaacggccagaccacctctgctttttctctgtcctccggagttggtgtgtggaacgcgttcgtattcgagatagtgatgacgttcgggctggtgtacaccgtctacgccaccgccgttgaccccaagagggggaacgtgggaacaatcgcgcccatcgcgattggtttcatcgttggcgccaatattttggcgggtggggcgttcgacggagcctccatgaacccggccgtgtctttcggaccggctttggtgagctggagctgggagaaccactgggtctactgggccggacctttgatcggcggcggtatcgccgggcttgtttatgagttcttcttcatcagccacagcggccacgagccactggccggcggtgaatacgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0006855 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009705 GO:0009941 GO:0015204 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0015893 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042221 GO:0042493 GO:0042807 GO:0042886 GO:0042887 GO:0042891 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0080170 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

242

Amino Acids

24.87

Weight (kDa)

5.14

Isoelectric Point (pI)

21.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36830 AT3G26520
fragaria_vesca	FvH4_3g34940 FvH4_3g34940 FvH4_6g16770 FvH4_7g03120
malus_domestica	MD03G1100200.v1.1
prunus_persica	Prupe.6G085200_v2.0.a1 Prupe.7G125900_v2.0.a1
pyrus_communis	pycom03g08240 pycom11g09610 pycom12g10750
rosa_chinensis	RchiOBHm_Chr3g0470701 RchiOBHm_Chr5g0062791
rosa_laevigata	RLG00000024246 RLG00000035580
rosa_multiflora	Rmu_co8269841.1_g000001 Rmu_sc0002790.1_g000002 Rmu_sc0006168.1_g000020 Rmu_ssc0000472.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017830 Rroxscaffold_6G00410570
rosa_rugosa	Rorug03G0112300 Rorug05G0351600
rosa_samantha	Rh3AG161800 Rh3BG186400 Rh3CG176700 Rh3DG188800 Rh5AG412900 Rh5BG426800 Rh5CG450700 Rh5DG440700
rosa_wichuraiana	Rw0G004640 Rw5G038800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	239, 518
AccI	GTMKAC	2 cut(s)	444, 621
AccII	CGCG	3 cut(s)	398, 491, 500
AccIII	TCCGGA	1 cut(s)	377
AclWI	GGATC	2 cut(s)	300, 313
AcoI	YGGCCR	4 cut(s)	346, 567, 694, 708
AcyI	GRCGYC	3 cut(s)	21, 240, 519
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	6 cut(s)	286, 469, 470, 471, 641, 710
AflIII	ACRYGT	2 cut(s)	214, 396
AgsI	TTSAA	1 cut(s)	100
AjiI	CACGTC	1 cut(s)	217
AluBI	AGCT	4 cut(s)	158, 298, 597, 603
AluI	AGCT	4 cut(s)	158, 298, 597, 603
AlwI	GGATC	2 cut(s)	300, 313
Aor13HI	TCCGGA	1 cut(s)	377
AoxI	GGCC	7 cut(s)	30, 93, 346, 567, 627, 694, 708
ApeKI	GCWGC	1 cut(s)	149
Asp700I	GAANNNNTTC	1 cut(s)	398
AspLEI	GCGC	3 cut(s)	242, 493, 521
AspS9I	GGNCC	3 cut(s)	581, 627, 632
AsuC2I	CCSGG	3 cut(s)	34, 566, 658
AsuHPI	GGTGA	4 cut(s)	100, 223, 604, 728
AvaII	GGWCC	2 cut(s)	581, 632
BamHI	GGATCC	1 cut(s)	305
BanI	GGYRCC	2 cut(s)	239, 518
BauI	CACGAG	1 cut(s)	698
BbsI	GAAGAC	1 cut(s)	61
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	1 cut(s)	503
BceAI	ACGGC	6 cut(s)	133, 167, 212, 361, 440, 554
BcnI	CCSGG	3 cut(s)	34, 566, 658
BfaI	CTAG	2 cut(s)	155, 727
BfoI	RGCGCY	2 cut(s)	243, 522
BglI	GCCNNNNNGGC	2 cut(s)	29, 693
BisI	GCNGC	5 cut(s)	147, 150, 195, 646, 694
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	5 cut(s)	148, 151, 196, 647, 695
Bme1390I	CCNGG	3 cut(s)	34, 566, 658
Bme18I	GGWCC	2 cut(s)	581, 632
BmgBI	CACGTC	1 cut(s)	217
BmgT120I	GGNCC	3 cut(s)	581, 627, 632
BmiI	GGNNCC	6 cut(s)	85, 121, 241, 307, 520, 553
BmrFI	CCNGG	3 cut(s)	34, 566, 658
BmrI	ACTGGG	3 cut(s)	295, 625, 634
BmsI	GCATC	1 cut(s)	285
BmuI	ACTGGG	3 cut(s)	295, 625, 634
BpiI	GAAGAC	1 cut(s)	61
BplI	GAGNNNNNCTC	2 cut(s)	35, 67
BpmI	CTGGAG	1 cut(s)	619
Bpu1102I	GCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	2 cut(s)	11, 314
BpuMI	CCSGG	3 cut(s)	34, 566, 658
BsaAI	YACGTR	1 cut(s)	272
BsaHI	GRCGYC	3 cut(s)	21, 240, 519
BsaJI	CCNNGG	1 cut(s)	301
BsaWI	WCCGGW	1 cut(s)	377
BsaXI	ACNNNNNCTCC	6 cut(s)	104, 134, 372, 402, 539, 569
Bsc4I	CCNNNNNNNGG	6 cut(s)	286, 469, 470, 471, 641, 710
Bse118I	RCCGGY	3 cut(s)	74, 583, 710
Bse1I	ACTGG	4 cut(s)	290, 620, 629, 711
BseAI	TCCGGA	1 cut(s)	377
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	1 cut(s)	276
BseLI	CCNNNNNNNGG	6 cut(s)	286, 469, 470, 471, 641, 710
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	4 cut(s)	290, 620, 629, 711
BseRI	GAGGAG	1 cut(s)	290
BseX3I	CGGCCG	1 cut(s)	567
BseXI	GCAGC	1 cut(s)	136
BseYI	CCCAGC	1 cut(s)	603
Bsh1236I	CGCG	3 cut(s)	398, 491, 500
Bsh1285I	CGRYCG	1 cut(s)	570
BshFI	GGCC	7 cut(s)	32, 95, 348, 569, 629, 696, 710
BshNI	GGYRCC	2 cut(s)	239, 518
BsiEI	CGRYCG	1 cut(s)	570
BslI	CCNNNNNNNGG	6 cut(s)	286, 469, 470, 471, 641, 710
BsnI	GGCC	7 cut(s)	32, 95, 348, 569, 629, 696, 710
Bsp13I	TCCGGA	1 cut(s)	377
Bsp1407I	TGTACA	1 cut(s)	435
Bsp143I	GATC	2 cut(s)	305, 639
Bsp1720I	GCTNAGC	1 cut(s)	294
Bsp68I	TCGCGA	1 cut(s)	500
BspANI	GGCC	7 cut(s)	32, 95, 348, 569, 629, 696, 710
BspCNI	CTCAG	1 cut(s)	307
BspEI	TCCGGA	1 cut(s)	377
BspFNI	CGCG	3 cut(s)	398, 491, 500
BspLI	GGNNCC	6 cut(s)	85, 121, 241, 307, 520, 553
BspPI	GGATC	2 cut(s)	300, 313
BspT107I	GGYRCC	2 cut(s)	239, 518
BsrFI	RCCGGY	3 cut(s)	74, 583, 710
BsrGI	TGTACA	1 cut(s)	435
BsrI	ACTGG	4 cut(s)	290, 620, 629, 711
BssAI	RCCGGY	3 cut(s)	74, 583, 710
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	2 cut(s)	305, 639
BssNI	GRCGYC	3 cut(s)	21, 240, 519
BssSI	CACGAG	1 cut(s)	698
Bst2BI	CACGAG	1 cut(s)	698
Bst4CI	ACNGT	2 cut(s)	313, 442
BstACI	GRCGYC	3 cut(s)	21, 240, 519
BstAUI	TGTACA	1 cut(s)	435
BstBAI	YACGTR	1 cut(s)	272
BstC8I	GCNNGC	5 cut(s)	39, 76, 319, 323, 712
BstDEI	CTNAG	1 cut(s)	294
BstF5I	GGATG	1 cut(s)	276
BstFNI	CGCG	3 cut(s)	398, 491, 500
BstH2I	RGCGCY	2 cut(s)	243, 522
BstHHI	GCGC	3 cut(s)	242, 493, 521
BstKTI	GATC	2 cut(s)	308, 642
BstMBI	GATC	2 cut(s)	305, 639
BstMCI	CGRYCG	1 cut(s)	570
BstMWI	GCNNNNNNNGC	7 cut(s)	29, 38, 155, 194, 497, 539, 693
BstSCI	CCNGG	3 cut(s)	32, 564, 656
BstUI	CGCG	3 cut(s)	398, 491, 500
BstV1I	GCAGC	1 cut(s)	136
BstV2I	GAAGAC	1 cut(s)	61
BstX2I	RGATCY	1 cut(s)	305
BstXI	CCANNNNNNTGG	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	305
BstZI	CGGCCG	1 cut(s)	567
BsuRI	GGCC	7 cut(s)	32, 95, 348, 569, 629, 696, 710
BtgZI	GCGATG	1 cut(s)	481
BtrI	CACGTC	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	276
BtsIMutI	CAGTG	2 cut(s)	613, 704
BtuMI	TCGCGA	1 cut(s)	500
Cac8I	GCNNGC	5 cut(s)	39, 76, 319, 323, 712
CfoI	GCGC	3 cut(s)	242, 493, 521
Cfr10I	RCCGGY	3 cut(s)	74, 583, 710
Cfr13I	GGNCC	3 cut(s)	581, 627, 632
CpoI	CGGWCCG	1 cut(s)	581
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	436
CspCI	CAANNNNNGTGG	2 cut(s)	439, 474
CspI	CGGWCCG	1 cut(s)	581
CviAII	CATG	2 cut(s)	91, 559
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	1 cut(s)	294
DinI	GGCGCC	2 cut(s)	241, 520
DpnI	GATC	2 cut(s)	307, 641
DpnII	GATC	2 cut(s)	305, 639
EaeI	YGGCCR	4 cut(s)	346, 567, 694, 708
EagI	CGGCCG	1 cut(s)	567
EciI	GGCGGA	1 cut(s)	225
EclXI	CGGCCG	1 cut(s)	567
Eco47I	GGWCC	2 cut(s)	581, 632
Eco52I	CGGCCG	1 cut(s)	567
EgeI	GGCGCC	2 cut(s)	241, 520
EheI	GGCGCC	2 cut(s)	241, 520
FaeI	CATG	2 cut(s)	94, 562
FaiI	YATR	3 cut(s)	92, 560, 669
FatI	CATG	2 cut(s)	90, 558
FauI	CCCGC	3 cut(s)	139, 232, 526
FblI	GTMKAC	2 cut(s)	444, 621
Fnu4HI	GCNGC	5 cut(s)	147, 150, 195, 646, 694
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	5 cut(s)	147, 150, 195, 646, 694
FspBI	CTAG	2 cut(s)	155, 727
GlaI	GCGC	3 cut(s)	241, 492, 520
GluI	GCNGC	5 cut(s)	147, 150, 195, 646, 694
GsaI	CCCAGC	1 cut(s)	607
GsuI	CTGGAG	1 cut(s)	619
HaeII	RGCGCY	2 cut(s)	243, 522
HaeIII	GGCC	7 cut(s)	32, 95, 348, 569, 629, 696, 710
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	3 cut(s)	242, 493, 521
Hin1I	GRCGYC	3 cut(s)	21, 240, 519
Hin1II	CATG	2 cut(s)	94, 562
Hin6I	GCGC	3 cut(s)	240, 491, 519
HinP1I	GCGC	3 cut(s)	240, 491, 519
HincII	GTYRAC	2 cut(s)	220, 460
HindII	GTYRAC	2 cut(s)	220, 460
HinfI	GANTC	1 cut(s)	138
HphI	GGTGA	4 cut(s)	100, 223, 604, 728
Hpy166II	GTNNAC	6 cut(s)	220, 436, 438, 445, 460, 622
Hpy188I	TCNGA	3 cut(s)	251, 305, 581
Hpy188III	TCNNGA	3 cut(s)	378, 409, 499
Hpy8I	GTNNAC	6 cut(s)	220, 436, 438, 445, 460, 622
Hpy99I	CGWCG	5 cut(s)	146, 188, 251, 317, 551
HpyAV	CCTTC	4 cut(s)	74, 106, 244, 253
HpyCH4III	ACNGT	2 cut(s)	313, 442
HpyCH4IV	ACGT	4 cut(s)	216, 271, 422, 477
HpyF10VI	GCNNNNNNNGC	7 cut(s)	29, 38, 155, 194, 497, 539, 693
HpyF3I	CTNAG	1 cut(s)	294
HpySE526I	ACGT	4 cut(s)	216, 271, 422, 477
Hsp92I	GRCGYC	3 cut(s)	21, 240, 519
Hsp92II	CATG	2 cut(s)	94, 562
HspAI	GCGC	3 cut(s)	240, 491, 519
KasI	GGCGCC	2 cut(s)	239, 518
Kpn2I	TCCGGA	1 cut(s)	377
KroI	GCCGGC	2 cut(s)	74, 710
KroNI	GCCGGC	2 cut(s)	76, 712
Kzo9I	GATC	2 cut(s)	305, 639
LmnI	GCTCC	5 cut(s)	89, 125, 303, 551, 600
Lsp1109I	GCAGC	1 cut(s)	136
LweI	GCATC	1 cut(s)	285
MaeI	CTAG	2 cut(s)	155, 727
MaeII	ACGT	4 cut(s)	216, 271, 422, 477
MaeIII	GTNAC	2 cut(s)	229, 254
MalI	GATC	2 cut(s)	307, 641
MboI	GATC	2 cut(s)	305, 639
MboII	GAAGA	4 cut(s)	55, 61, 667, 670
MflI	RGATCY	1 cut(s)	305
MluI	ACGCGT	1 cut(s)	396
Mly113I	GGCGCC	2 cut(s)	240, 519
MlyI	GAGTC	1 cut(s)	132
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	8 cut(s)	35, 245, 290, 311, 367, 385, 462, 565
MreI	CGCCGGCG	1 cut(s)	74
MroI	TCCGGA	1 cut(s)	377
MroNI	GCCGGC	2 cut(s)	74, 710
MroXI	GAANNNNTTC	1 cut(s)	398
MspA1I	CMGCKG	2 cut(s)	149, 693
MspR9I	CCNGG	3 cut(s)	34, 566, 658
MvnI	CGCG	3 cut(s)	398, 491, 500
MwoI	GCNNNNNNNGC	7 cut(s)	29, 38, 155, 194, 497, 539, 693
NaeI	GCCGGC	2 cut(s)	76, 712
NarI	GGCGCC	2 cut(s)	240, 519
NciI	CCSGG	3 cut(s)	34, 566, 658
NdeII	GATC	2 cut(s)	305, 639
NgoMIV	GCCGGC	2 cut(s)	74, 710
NlaIII	CATG	2 cut(s)	94, 562
NlaIV	GGNNCC	6 cut(s)	85, 121, 241, 307, 520, 553
NmeAIII	GCCGAG	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	229
NruI	TCGCGA	1 cut(s)	500
PcsI	WCGNNNNNNNCGW	3 cut(s)	243, 309, 453
PdiI	GCCGGC	2 cut(s)	76, 712
PdmI	GAANNNNTTC	1 cut(s)	398
PkrI	GCNGC	5 cut(s)	148, 151, 196, 647, 695
PleI	GAGTC	1 cut(s)	132
PluTI	GGCGCC	2 cut(s)	243, 522
PpsI	GAGTC	1 cut(s)	132
Ppu21I	YACGTR	1 cut(s)	272
PspFI	CCCAGC	1 cut(s)	603
PspN4I	GGNNCC	6 cut(s)	85, 121, 241, 307, 520, 553
PspPI	GGNCC	3 cut(s)	581, 627, 632
PsuI	RGATCY	1 cut(s)	305
RruI	TCGCGA	1 cut(s)	500
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
Rsr2I	CGGWCCG	1 cut(s)	581
RsrII	CGGWCCG	1 cut(s)	581
SatI	GCNGC	5 cut(s)	147, 150, 195, 646, 694
Sau3AI	GATC	2 cut(s)	305, 639
Sau96I	GGNCC	3 cut(s)	581, 627, 632
SchI	GAGTC	1 cut(s)	132
ScrFI	CCNGG	3 cut(s)	34, 566, 658
SfaNI	GCATC	1 cut(s)	285
SfoI	GGCGCC	2 cut(s)	241, 520
SgrAI	CRCCGGYG	1 cut(s)	74
SinI	GGWCC	2 cut(s)	581, 632
SmlI	CTYRAG	2 cut(s)	26, 329
SmoI	CTYRAG	2 cut(s)	26, 329
SspDI	GGCGCC	2 cut(s)	239, 518
SspI	AATATT	1 cut(s)	526
SspMI	CTAG	2 cut(s)	155, 727
StyD4I	CCNGG	3 cut(s)	32, 564, 656
TaaI	ACNGT	2 cut(s)	313, 442
TaiI	ACGT	4 cut(s)	219, 274, 425, 480
TaqI	TCGA	2 cut(s)	408, 546
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	4 cut(s)	149, 197, 648, 696
TscAI	CASTG	2 cut(s)	620, 711
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	4 cut(s)	37, 499, 575, 670
TspGWI	ACGGA	1 cut(s)	564
TspRI	CASTG	2 cut(s)	620, 711
VpaK11BI	GGWCC	2 cut(s)	581, 632
XmiI	GTMKAC	2 cut(s)	444, 621
XmnI	GAANNNNTTC	1 cut(s)	398
XspI	CTAG	2 cut(s)	155, 727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.