Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003756

Physical Location & Seq

Genomic Coordinates Forward (+)

68971194 .. 68972183

Gene Structure 990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035580

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGCCGATTTCTAGTATTGCAGTGGGAAACCCGGCTGAGTTCGGGAGCGTCGACGCTCTCAGAGCAGCTTTTGCTGAGTTTATCTCCGTCCTCATCTTTGTTTTTGCTGGCTCGGGTTCAGGCGTAGCTTTTGCCGAGCTCACTGACAATGCATCAACAACACCCGCCGGCCTTATAGCCGCGGCCGTGGCCCACGCCTTTGCCCTTTTCGTGGCGGTTGCCATAGCTGCAAACATCTCCGGCGGTCATGTTAACCCCGCTGTTACATTCGGTGCCTTCCTTGGCGGCAACATCACTCTCGTAAGGACTATCTTGTACTGGATTGCCCAGCTGCTCGGATCCGTTGTTGCTTGCTTGCTCCTCAAGTTTGCAACCAATGGAATGACTATCTCTGCTTTCTCCCTGTCGACTGGTGTTGGAGTATGGAACGCATTGGTGCTCGAAATCGTGATGACCTTCGGTTTGGTCTACACCGTGTACGCAACTGCCCTCGACAAAAGGTCCGCCGGAAACATCAGCATAATTGCACCAATTGCCATTGGTTTCATTGTTGGTGCTAACATCTTGGTCGGTGGTGCTTTCGATGGTGCTTCAATGAACCCAGCAGTCTCCTTCGGACCCGCTGTCGTCAGCTGGTCCTGGGAAAACCACTGGGTATACTGGCTCGGACCATTCCTTGGTGCCGCCATTGCTGCCCTCATCTACGACTGGATCTTCATCGGCCCAGCCACCCACGAGCCACTACCCACCACAGACTACTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0009705 GO:0015204 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042807 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

255

Amino Acids

26.16

Weight (kDa)

4.72

Isoelectric Point (pI)

30.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	14 - 235	2.5e-75	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36830 AT3G26520
fragaria_vesca	FvH4_3g34940 FvH4_3g34940 FvH4_6g16770 FvH4_7g03120
malus_domestica	MD03G1100200.v1.1
prunus_persica	Prupe.6G085200_v2.0.a1 Prupe.7G125900_v2.0.a1
pyrus_communis	pycom03g08240 pycom11g09610 pycom12g10750
rosa_chinensis	RchiOBHm_Chr3g0470701 RchiOBHm_Chr5g0062791
rosa_laevigata	RLG00000024246 RLG00000035580
rosa_multiflora	Rmu_co8269841.1_g000001 Rmu_sc0002790.1_g000002 Rmu_sc0006168.1_g000020 Rmu_ssc0000472.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017830 Rroxscaffold_6G00410570
rosa_rugosa	Rorug03G0112300 Rorug05G0351600
rosa_samantha	Rh3AG161800 Rh3BG186400 Rh3CG176700 Rh3DG188800 Rh5AG412900 Rh5BG426800 Rh5CG450700 Rh5DG440700
rosa_wichuraiana	Rw0G004640 Rw5G038800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	272, 680
AccB7I	CCANNNNNTGG	1 cut(s)	677
AccI	GTMKAC	4 cut(s)	51, 407, 468, 657
AccII	CGCG	1 cut(s)	182
AclWI	GGATC	3 cut(s)	333, 346, 719
AcoI	YGGCCR	1 cut(s)	183
AfaI	GTAC	2 cut(s)	317, 479
AfiI	CCNNNNNNNGG	2 cut(s)	211, 677
AgsI	TTSAA	1 cut(s)	594
AhdI	GACNNNNNGTC	2 cut(s)	499, 623
AjnI	CCWGG	1 cut(s)	638
AluBI	AGCT	6 cut(s)	68, 128, 139, 227, 331, 633
AluI	AGCT	6 cut(s)	68, 128, 139, 227, 331, 633
Alw21I	GWGCWC	2 cut(s)	141, 441
Alw26I	GTCTC	1 cut(s)	613
AlwI	GGATC	3 cut(s)	333, 346, 719
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	4 cut(s)	169, 183, 189, 721
ApeKI	GCWGC	4 cut(s)	65, 227, 331, 692
ArsI	GACNNNNNNTTYG	2 cut(s)	445, 477
AspS9I	GGNCC	6 cut(s)	190, 501, 617, 636, 668, 722
AsuC2I	CCSGG	1 cut(s)	32
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	4 cut(s)	501, 617, 636, 668
BamHI	GGATCC	1 cut(s)	338
BanI	GGYRCC	2 cut(s)	272, 680
BanII	GRGCYC	1 cut(s)	141
BauI	CACGAG	1 cut(s)	734
Bbv12I	GWGCWC	2 cut(s)	141, 441
BbvI	GCAGC	4 cut(s)	77, 214, 318, 679
BccI	CCATC	1 cut(s)	578
BceAI	ACGGC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	640
BcnI	CCSGG	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	613
BfaI	CTAG	1 cut(s)	12
BisI	GCNGC	8 cut(s)	66, 180, 183, 228, 286, 332, 684, 693
BlsI	GCNGC	8 cut(s)	67, 181, 184, 229, 287, 333, 685, 694
Bme1390I	CCNGG	2 cut(s)	32, 640
Bme18I	GGWCC	4 cut(s)	501, 617, 636, 668
BmeRI	GACNNNNNGTC	2 cut(s)	499, 623
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	6 cut(s)	190, 501, 617, 636, 668, 722
BmiI	GGNNCC	4 cut(s)	274, 340, 619, 682
BmrFI	CCNGG	2 cut(s)	32, 640
BmrI	ACTGGG	1 cut(s)	661
BmsI	GCATC	1 cut(s)	161
BmuI	ACTGGG	1 cut(s)	661
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	32
BsaBI	GATNNNNATC	1 cut(s)	716
BsaJI	CCNNGG	5 cut(s)	180, 186, 280, 639, 676
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 677
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	5 cut(s)	323, 415, 656, 665, 713
Bse3DI	GCAATG	1 cut(s)	687
Bse8I	GATNNNNATC	1 cut(s)	716
BseBI	CCWGG	1 cut(s)	640
BseDI	CCNNGG	5 cut(s)	180, 186, 280, 639, 676
BseJI	GATNNNNATC	1 cut(s)	716
BseLI	CCNNNNNNNGG	2 cut(s)	211, 677
BseMI	GCAATG	1 cut(s)	687
BseMII	CTCAG	3 cut(s)	27, 66, 73
BseNI	ACTGG	5 cut(s)	323, 415, 656, 665, 713
BseRI	GAGGAG	1 cut(s)	350
BseX3I	CGGCCG	1 cut(s)	183
BseXI	GCAGC	4 cut(s)	77, 214, 318, 679
BseYI	CCCAGC	3 cut(s)	327, 601, 724
Bsh1236I	CGCG	1 cut(s)	182
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	4 cut(s)	171, 185, 191, 723
BshNI	GGYRCC	2 cut(s)	272, 680
BsiEI	CGRYCG	1 cut(s)	186
BsiHKAI	GWGCWC	2 cut(s)	141, 441
BsiHKCI	CYCGRG	1 cut(s)	112
BsiSI	CCGG	4 cut(s)	32, 168, 240, 507
BslI	CCNNNNNNNGG	2 cut(s)	211, 677
BsmAI	GTCTC	1 cut(s)	613
BsnI	GGCC	4 cut(s)	171, 185, 191, 723
BsoBI	CYCGRG	1 cut(s)	112
Bsp1286I	GDGCHC	2 cut(s)	141, 441
Bsp143I	GATC	2 cut(s)	338, 711
BspANI	GGCC	4 cut(s)	171, 185, 191, 723
BspCNI	CTCAG	3 cut(s)	28, 67, 72
BspFNI	CGCG	1 cut(s)	182
BspLI	GGNNCC	4 cut(s)	274, 340, 619, 682
BspPI	GGATC	3 cut(s)	333, 346, 719
BspT107I	GGYRCC	2 cut(s)	272, 680
BsrDI	GCAATG	1 cut(s)	687
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	5 cut(s)	323, 415, 656, 665, 713
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	5 cut(s)	180, 186, 280, 639, 676
BssMI	GATC	2 cut(s)	338, 711
BssNAI	GTATAC	1 cut(s)	658
BssSI	CACGAG	1 cut(s)	734
BssT1I	CCWWGG	2 cut(s)	280, 676
Bst1107I	GTATAC	1 cut(s)	658
Bst2BI	CACGAG	1 cut(s)	734
Bst2UI	CCWGG	1 cut(s)	640
Bst4CI	ACNGT	1 cut(s)	475
BstAPI	GCANNNNNTGC	2 cut(s)	71, 533
BstC8I	GCNNGC	4 cut(s)	109, 169, 352, 356
BstDEI	CTNAG	3 cut(s)	36, 59, 75
BstDSI	CCRYGG	2 cut(s)	180, 186
BstFNI	CGCG	1 cut(s)	182
BstKTI	GATC	2 cut(s)	341, 714
BstMAI	GTCTC	1 cut(s)	613
BstMBI	GATC	2 cut(s)	338, 711
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	7 cut(s)	62, 71, 188, 227, 533, 689, 692
BstNI	CCWGG	1 cut(s)	640
BstSCI	CCNGG	2 cut(s)	30, 638
BstUI	CGCG	1 cut(s)	182
BstV1I	GCAGC	4 cut(s)	77, 214, 318, 679
BstX2I	RGATCY	2 cut(s)	338, 711
BstYI	RGATCY	2 cut(s)	338, 711
BstZ17I	GTATAC	1 cut(s)	658
BstZI	CGGCCG	1 cut(s)	183
BsuRI	GGCC	4 cut(s)	171, 185, 191, 723
BtgI	CCRYGG	2 cut(s)	180, 186
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	3 cut(s)	27, 141, 649
Cac8I	GCNNGC	4 cut(s)	109, 169, 352, 356
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	6 cut(s)	190, 501, 617, 636, 668, 722
Cfr42I	CCGCGG	1 cut(s)	183
CseI	GACGC	2 cut(s)	37, 62
Csp6I	GTAC	2 cut(s)	316, 478
CviAII	CATG	1 cut(s)	248
CviQI	GTAC	2 cut(s)	316, 478
DdeI	CTNAG	3 cut(s)	36, 59, 75
DpnI	GATC	2 cut(s)	340, 713
DpnII	GATC	2 cut(s)	338, 711
DriI	GACNNNNNGTC	2 cut(s)	499, 623
EaeI	YGGCCR	1 cut(s)	183
EagI	CGGCCG	1 cut(s)	183
Eam1105I	GACNNNNNGTC	2 cut(s)	499, 623
EciI	GGCGGA	1 cut(s)	493
Ecl136II	GAGCTC	1 cut(s)	139
EclXI	CGGCCG	1 cut(s)	183
Eco130I	CCWWGG	2 cut(s)	280, 676
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	4 cut(s)	501, 617, 636, 668
Eco52I	CGGCCG	1 cut(s)	183
Eco53kI	GAGCTC	1 cut(s)	139
Eco88I	CYCGRG	1 cut(s)	112
EcoICRI	GAGCTC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	638
EcoT14I	CCWWGG	2 cut(s)	280, 676
EcoT22I	ATGCAT	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	141
ErhI	CCWWGG	2 cut(s)	280, 676
FaeI	CATG	1 cut(s)	251
FaiI	YATR	6 cut(s)	176, 224, 249, 424, 521, 658
FatI	CATG	1 cut(s)	247
FauI	CCCGC	3 cut(s)	172, 265, 628
FblI	GTMKAC	4 cut(s)	51, 407, 468, 657
Fnu4HI	GCNGC	8 cut(s)	66, 180, 183, 228, 286, 332, 684, 693
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	8 cut(s)	66, 180, 183, 228, 286, 332, 684, 693
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	8 cut(s)	66, 180, 183, 228, 286, 332, 684, 693
GsaI	CCCAGC	3 cut(s)	331, 605, 728
HaeIII	GGCC	4 cut(s)	171, 185, 191, 723
HapII	CCGG	4 cut(s)	32, 168, 240, 507
HgaI	GACGC	2 cut(s)	37, 62
Hin1II	CATG	1 cut(s)	251
HincII	GTYRAC	3 cut(s)	52, 253, 408
HindII	GTYRAC	3 cut(s)	52, 253, 408
HpaI	GTTAAC	1 cut(s)	253
HpaII	CCGG	4 cut(s)	32, 168, 240, 507
Hpy166II	GTNNAC	6 cut(s)	52, 253, 408, 469, 478, 658
Hpy188I	TCNGA	4 cut(s)	62, 338, 617, 668
Hpy188III	TCNNGA	2 cut(s)	43, 448
Hpy8I	GTNNAC	6 cut(s)	52, 253, 408, 469, 478, 658
Hpy99I	CGWCG	2 cut(s)	53, 56
HpyAV	CCTTC	3 cut(s)	286, 466, 622
HpyCH4III	ACNGT	1 cut(s)	475
HpyCH4V	TGCA	5 cut(s)	20, 152, 230, 371, 527
HpyF10VI	GCNNNNNNNGC	7 cut(s)	62, 71, 188, 227, 533, 689, 692
HpyF3I	CTNAG	3 cut(s)	36, 59, 75
Hsp92II	CATG	1 cut(s)	251
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
KspAI	GTTAAC	1 cut(s)	253
KspI	CCGCGG	1 cut(s)	183
Kzo9I	GATC	2 cut(s)	338, 711
LmnI	GCTCC	2 cut(s)	45, 363
Lsp1109I	GCAGC	4 cut(s)	77, 214, 318, 679
LweI	GCATC	1 cut(s)	161
MaeI	CTAG	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	2 cut(s)	340, 713
MboI	GATC	2 cut(s)	338, 711
MboII	GAAGA	1 cut(s)	706
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	2 cut(s)	338, 711
MhlI	GDGCHC	2 cut(s)	141, 441
MluCI	AATT	2 cut(s)	522, 531
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	4 cut(s)	101, 371, 500, 707
Mph1103I	ATGCAT	1 cut(s)	154
MroNI	GCCGGC	1 cut(s)	167
MseI	TTAA	1 cut(s)	252
MspA1I	CMGCKG	5 cut(s)	182, 260, 331, 623, 633
MspI	CCGG	4 cut(s)	32, 168, 240, 507
MspR9I	CCNGG	2 cut(s)	32, 640
MunI	CAATTG	1 cut(s)	531
MvaI	CCWGG	1 cut(s)	640
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	7 cut(s)	62, 71, 188, 227, 533, 689, 692
NaeI	GCCGGC	1 cut(s)	169
NciI	CCSGG	1 cut(s)	32
NdeII	GATC	2 cut(s)	338, 711
NgoMIV	GCCGGC	1 cut(s)	167
NlaIII	CATG	1 cut(s)	251
NlaIV	GGNNCC	4 cut(s)	274, 340, 619, 682
NmeAIII	GCCGAG	1 cut(s)	160
NsiI	ATGCAT	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PdiI	GCCGGC	1 cut(s)	169
PflMI	CCANNNNNTGG	1 cut(s)	677
PkrI	GCNGC	8 cut(s)	67, 181, 184, 229, 287, 333, 685, 694
Psp124BI	GAGCTC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	638
PspFI	CCCAGC	3 cut(s)	327, 601, 724
PspGI	CCWGG	1 cut(s)	638
PspN4I	GGNNCC	4 cut(s)	274, 340, 619, 682
PspPI	GGNCC	6 cut(s)	190, 501, 617, 636, 668, 722
PsuI	RGATCY	2 cut(s)	338, 711
PvuII	CAGCTG	2 cut(s)	331, 633
RsaI	GTAC	2 cut(s)	317, 479
RsaNI	GTAC	2 cut(s)	316, 478
SacI	GAGCTC	1 cut(s)	141
SacII	CCGCGG	1 cut(s)	183
SalI	GTCGAC	2 cut(s)	50, 406
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	8 cut(s)	66, 180, 183, 228, 286, 332, 684, 693
Sau3AI	GATC	2 cut(s)	338, 711
Sau96I	GGNCC	6 cut(s)	190, 501, 617, 636, 668, 722
ScrFI	CCNGG	2 cut(s)	32, 640
SduI	GDGCHC	2 cut(s)	141, 441
SetI	ASST	8 cut(s)	70, 130, 141, 229, 333, 458, 503, 635
SfaNI	GCATC	1 cut(s)	161
Sfr303I	CCGCGG	1 cut(s)	183
SgrBI	CCGCGG	1 cut(s)	183
SgrDI	CGTCGACG	1 cut(s)	50
SinI	GGWCC	4 cut(s)	501, 617, 636, 668
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	2 cut(s)	522, 531
SspMI	CTAG	1 cut(s)	12
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	2 cut(s)	30, 638
StyI	CCWWGG	2 cut(s)	280, 676
TaaI	ACNGT	1 cut(s)	475
TaqI	TCGA	5 cut(s)	51, 407, 441, 492, 582
TasI	AATT	2 cut(s)	522, 531
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	4 cut(s)	182, 185, 288, 686
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	3 cut(s)	27, 148, 656
TseI	GCWGC	4 cut(s)	65, 227, 331, 692
TspDTI	ATGAA	3 cut(s)	535, 611, 706
TspGWI	ACGGA	2 cut(s)	76, 331
TspRI	CASTG	3 cut(s)	27, 148, 656
Van91I	CCANNNNNTGG	1 cut(s)	677
VpaK11BI	GGWCC	4 cut(s)	501, 617, 636, 668
XmiI	GTMKAC	4 cut(s)	51, 407, 468, 657
XspI	CTAG	1 cut(s)	12
Zsp2I	ATGCAT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.