Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003756

Physical Location & Seq

Genomic Coordinates Reverse (-)

7866640 .. 7868055

Gene Structure 1416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g09610.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGACAGTCCGGTCCCGCATCGTGTTTACGTTGTCATTAGGAACCGCTCTATATAACTGTCACAATGACTCTAACCGAAAACACTCAGAGCAAAAGCAGCTTATTTTCCTCTTGCGACAGTCTAAAGGCTTTTTGGTTAAGTCGAAAGTCGAAATGGCGATCAACAGAATTGCACTGGGTAGCGCAGCTGAGTTTGGTCAGGCTCATGCTCTGAAAGCAGCTCTTGCTGAGTTCATCTCAGTCCTCATCTTTGTTTTTGCTGGTGAAGGCTCTGGCATGGCCTTCAACAAGCTCACTGACAGTGCATCAACCACACCGGCCGGCCTTGTAGCTGCTGCCCTAGCGCACGCCTTCGCCCTTTTTGTCGCTGTTTCAATCGCCGCAAACATCTCCGGCGGGCATGTTAACCCTGCCGTCACATTCGGTGCCTTCATTGGTGGCCACATCACTTTCGTCAGGACTATCTTGTACTGGATCGCCCAGTTGATTGGAGCCGTCATTGCTTGCTTGCTCCTCAAGTTTGCTACCGGTGGATTGGAAACATCTGCTTTCTCCCTATCGTCTGGCGTCGGAGTATGGAACGCTGTGGTCCTCGAAATTGTGATCACCTTCGGCTTGGTTTACACCGTGTACGCAACTGCCGTAGACCCCAAGAAGGGCAACATCGGCACCATTGCACCCATTGCCATTGGTTTCATCGTTGGTGCCAACATCTTGGTTGCCGGTGCCTTTGACGGTGCATCCATGAACCCCGCAGTTTCCTTCGGCCCAGCTGTCGTCAGCTGGACATGGGACAACCACTGGGTCTACTGGCTCGGACCATTCATCGGGGCTGCCATTGCAGCCGTAGTCTACGAGCTCATCTTCATCGCCCCAGACACCCACGAGCAGCTCCCCACCACAGACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0009705 GO:0015204 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042807 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

304

Amino Acids

31.91

Weight (kDa)

7.09

Isoelectric Point (pI)

29.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36830 AT3G26520
fragaria_vesca	FvH4_3g34940 FvH4_3g34940 FvH4_6g16770 FvH4_7g03120
malus_domestica	MD03G1100200.v1.1
prunus_persica	Prupe.6G085200_v2.0.a1 Prupe.7G125900_v2.0.a1
pyrus_communis	pycom03g08240 pycom11g09610 pycom12g10750
rosa_chinensis	RchiOBHm_Chr3g0470701 RchiOBHm_Chr5g0062791
rosa_laevigata	RLG00000024246 RLG00000035580
rosa_multiflora	Rmu_co8269841.1_g000001 Rmu_sc0002790.1_g000002 Rmu_sc0006168.1_g000020 Rmu_ssc0000472.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017830 Rroxscaffold_6G00410570
rosa_rugosa	Rorug03G0112300 Rorug05G0351600
rosa_samantha	Rh3AG161800 Rh3BG186400 Rh3CG176700 Rh3DG188800 Rh5AG412900 Rh5BG426800 Rh5CG450700 Rh5DG440700
rosa_wichuraiana	Rw0G004640 Rw5G038800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
AccB1I	GGYRCC	4 cut(s)	425, 668, 704, 725
AccBSI	CCGCTC	1 cut(s)	47
AccI	GTMKAC	3 cut(s)	645, 807, 852
AciI	CCGC	5 cut(s)	16, 45, 381, 396, 753
AclWI	GGATC	1 cut(s)	482
AcoI	YGGCCR	2 cut(s)	318, 439
AcyI	GRCGYC	1 cut(s)	567
AfaI	GTAC	2 cut(s)	470, 632
AfiI	CCNNNNNNNGG	3 cut(s)	655, 656, 827
AgeI	ACCGGT	1 cut(s)	527
AgsI	TTSAA	2 cut(s)	286, 375
AluBI	AGCT	9 cut(s)	100, 188, 221, 292, 332, 773, 783, 859, 892
AluI	AGCT	9 cut(s)	100, 188, 221, 292, 332, 773, 783, 859, 892
Alw21I	GWGCWC	1 cut(s)	861
AlwI	GGATC	1 cut(s)	482
AoxI	GGCC	5 cut(s)	279, 318, 322, 439, 766
ApeKI	GCWGC	8 cut(s)	97, 185, 218, 332, 335, 833, 842, 889
AsiGI	ACCGGT	1 cut(s)	527
AspLEI	GCGC	2 cut(s)	185, 346
AspS9I	GGNCC	4 cut(s)	12, 589, 767, 818
AsuHPI	GGTGA	2 cut(s)	275, 598
AvaII	GGWCC	3 cut(s)	12, 589, 818
BalI	TGGCCA	1 cut(s)	441
BanI	GGYRCC	4 cut(s)	425, 668, 704, 725
BanII	GRGCYC	1 cut(s)	861
BauI	CACGAG	1 cut(s)	884
Bbv12I	GWGCWC	1 cut(s)	861
BbvI	GCAGC	8 cut(s)	109, 197, 230, 319, 322, 820, 854, 901
BceAI	ACGGC	4 cut(s)	398, 479, 626, 830
BclI	TGATCA	1 cut(s)	603
BfaI	CTAG	1 cut(s)	341
BisI	GCNGC	9 cut(s)	98, 186, 219, 333, 336, 381, 834, 843, 890
BlsI	GCNGC	9 cut(s)	99, 187, 220, 334, 337, 382, 835, 844, 891
Bme18I	GGWCC	3 cut(s)	12, 589, 818
BmgT120I	GGNCC	4 cut(s)	12, 589, 767, 818
BmiI	GGNNCC	7 cut(s)	14, 43, 427, 493, 670, 706, 727
BmrI	ACTGGG	3 cut(s)	185, 475, 811
BmsI	GCATC	3 cut(s)	27, 314, 749
BmuI	ACTGGG	3 cut(s)	185, 475, 811
BplI	GAGNNNNNCTC	2 cut(s)	221, 253
BpuEI	CTTGAG	1 cut(s)	500
BsaHI	GRCGYC	1 cut(s)	567
BsaWI	WCCGGW	2 cut(s)	9, 527
Bsc4I	CCNNNNNNNGG	3 cut(s)	655, 656, 827
Bse118I	RCCGGY	4 cut(s)	316, 320, 527, 722
Bse1I	ACTGG	5 cut(s)	180, 476, 481, 806, 815
Bse3DI	GCAATG	4 cut(s)	498, 672, 681, 837
BseGI	GGATG	1 cut(s)	740
BseLI	CCNNNNNNNGG	3 cut(s)	655, 656, 827
BseMI	GCAATG	4 cut(s)	498, 672, 681, 837
BseMII	CTCAG	4 cut(s)	99, 180, 219, 252
BseNI	ACTGG	5 cut(s)	180, 476, 481, 806, 815
BseRI	GAGGAG	1 cut(s)	503
BseX3I	CGGCCG	1 cut(s)	318
BseXI	GCAGC	8 cut(s)	109, 197, 230, 319, 322, 820, 854, 901
BseYI	CCCAGC	1 cut(s)	769
Bsh1285I	CGRYCG	1 cut(s)	321
BshFI	GGCC	5 cut(s)	281, 320, 324, 441, 768
BshNI	GGYRCC	4 cut(s)	425, 668, 704, 725
BshTI	ACCGGT	1 cut(s)	527
BsiEI	CGRYCG	1 cut(s)	321
BsiHKAI	GWGCWC	1 cut(s)	861
BsiSI	CCGG	6 cut(s)	10, 317, 321, 393, 528, 723
BslFI	GGGAC	1 cut(s)	806
BslI	CCNNNNNNNGG	3 cut(s)	655, 656, 827
BsmFI	GGGAC	1 cut(s)	806
BsnI	GGCC	5 cut(s)	281, 320, 324, 441, 768
Bsp1286I	GDGCHC	1 cut(s)	861
Bsp143I	GATC	3 cut(s)	159, 474, 603
BspACI	CCGC	5 cut(s)	16, 45, 381, 396, 753
BspANI	GGCC	5 cut(s)	281, 320, 324, 441, 768
BspCNI	CTCAG	4 cut(s)	98, 181, 220, 251
BspLI	GGNNCC	7 cut(s)	14, 43, 427, 493, 670, 706, 727
BspPI	GGATC	1 cut(s)	482
BspT107I	GGYRCC	4 cut(s)	425, 668, 704, 725
BsrBI	CCGCTC	1 cut(s)	47
BsrDI	GCAATG	4 cut(s)	498, 672, 681, 837
BsrFI	RCCGGY	4 cut(s)	316, 320, 527, 722
BsrI	ACTGG	5 cut(s)	180, 476, 481, 806, 815
BssAI	RCCGGY	4 cut(s)	316, 320, 527, 722
BssMI	GATC	3 cut(s)	159, 474, 603
BssNI	GRCGYC	1 cut(s)	567
BssSI	CACGAG	1 cut(s)	884
Bst2BI	CACGAG	1 cut(s)	884
Bst4CI	ACNGT	6 cut(s)	7, 59, 120, 302, 628, 737
BstACI	GRCGYC	1 cut(s)	567
BstAPI	GCANNNNNTGC	2 cut(s)	224, 683
BstC8I	GCNNGC	5 cut(s)	322, 348, 398, 505, 509
BstDEI	CTNAG	4 cut(s)	85, 189, 228, 238
BstF5I	GGATG	1 cut(s)	740
BstHHI	GCGC	2 cut(s)	185, 346
BstKTI	GATC	3 cut(s)	162, 477, 606
BstMBI	GATC	3 cut(s)	159, 474, 603
BstMCI	CGRYCG	1 cut(s)	321
BstMWI	GCNNNNNNNGC	9 cut(s)	97, 215, 224, 341, 500, 666, 683, 839, 842
BstNSI	RCATGY	1 cut(s)	404
BstV1I	GCAGC	8 cut(s)	109, 197, 230, 319, 322, 820, 854, 901
BstXI	CCANNNNNNTGG	2 cut(s)	488, 715
BstZI	CGGCCG	1 cut(s)	318
BsuRI	GGCC	5 cut(s)	281, 320, 324, 441, 768
BtgZI	GCGATG	1 cut(s)	853
BtsCI	GGATG	1 cut(s)	740
BtsIMutI	CAGTG	4 cut(s)	173, 294, 307, 799
Cac8I	GCNNGC	5 cut(s)	322, 348, 398, 505, 509
CfoI	GCGC	2 cut(s)	185, 346
Cfr10I	RCCGGY	4 cut(s)	316, 320, 527, 722
Cfr13I	GGNCC	4 cut(s)	12, 589, 767, 818
CseI	GACGC	1 cut(s)	556
Csp6I	GTAC	2 cut(s)	469, 631
CspAI	ACCGGT	1 cut(s)	527
CviAII	CATG	5 cut(s)	206, 277, 401, 745, 789
CviQI	GTAC	2 cut(s)	469, 631
DdeI	CTNAG	4 cut(s)	85, 189, 228, 238
DpnI	GATC	3 cut(s)	161, 476, 605
DpnII	GATC	3 cut(s)	159, 474, 603
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
EaeI	YGGCCR	2 cut(s)	318, 439
EagI	CGGCCG	1 cut(s)	318
Ecl136II	GAGCTC	1 cut(s)	859
EclXI	CGGCCG	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	861
Eco47I	GGWCC	3 cut(s)	12, 589, 818
Eco52I	CGGCCG	1 cut(s)	318
Eco53kI	GAGCTC	1 cut(s)	859
EcoICRI	GAGCTC	1 cut(s)	859
EcoT38I	GRGCYC	1 cut(s)	861
FaeI	CATG	5 cut(s)	209, 280, 404, 748, 792
FaiI	YATR	8 cut(s)	52, 54, 207, 278, 402, 577, 746, 790
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FaqI	GGGAC	1 cut(s)	806
FatI	CATG	5 cut(s)	205, 276, 400, 744, 788
FauI	CCCGC	3 cut(s)	23, 389, 760
FbaI	TGATCA	1 cut(s)	603
FblI	GTMKAC	3 cut(s)	645, 807, 852
Fnu4HI	GCNGC	9 cut(s)	98, 186, 219, 333, 336, 381, 834, 843, 890
FokI	GGATG	1 cut(s)	727
FriOI	GRGCYC	1 cut(s)	861
FseI	GGCCGGCC	1 cut(s)	324
Fsp4HI	GCNGC	9 cut(s)	98, 186, 219, 333, 336, 381, 834, 843, 890
FspBI	CTAG	1 cut(s)	341
GlaI	GCGC	2 cut(s)	184, 345
GluI	GCNGC	9 cut(s)	98, 186, 219, 333, 336, 381, 834, 843, 890
GsaI	CCCAGC	1 cut(s)	773
HaeIII	GGCC	5 cut(s)	281, 320, 324, 441, 768
HapII	CCGG	6 cut(s)	10, 317, 321, 393, 528, 723
HgaI	GACGC	1 cut(s)	556
HhaI	GCGC	2 cut(s)	185, 346
Hin1I	GRCGYC	1 cut(s)	567
Hin1II	CATG	5 cut(s)	209, 280, 404, 748, 792
Hin6I	GCGC	2 cut(s)	183, 344
HinP1I	GCGC	2 cut(s)	183, 344
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	1 cut(s)	68
HpaI	GTTAAC	1 cut(s)	406
HpaII	CCGG	6 cut(s)	10, 317, 321, 393, 528, 723
HphI	GGTGA	2 cut(s)	275, 598
Hpy166II	GTNNAC	7 cut(s)	27, 406, 622, 631, 646, 808, 853
Hpy188I	TCNGA	4 cut(s)	88, 213, 572, 818
Hpy188III	TCNNGA	1 cut(s)	457
Hpy8I	GTNNAC	7 cut(s)	27, 406, 622, 631, 646, 808, 853
Hpy99I	CGWCG	1 cut(s)	572
HpyAV	CCTTC	7 cut(s)	260, 292, 361, 439, 619, 649, 772
HpyCH4III	ACNGT	6 cut(s)	7, 59, 120, 302, 628, 737
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	5 cut(s)	173, 305, 677, 740, 842
HpyF10VI	GCNNNNNNNGC	9 cut(s)	97, 215, 224, 341, 500, 666, 683, 839, 842
HpyF3I	CTNAG	4 cut(s)	85, 189, 228, 238
HpySE526I	ACGT	1 cut(s)	29
Hsp92I	GRCGYC	1 cut(s)	567
Hsp92II	CATG	5 cut(s)	209, 280, 404, 748, 792
HspAI	GCGC	2 cut(s)	183, 344
KroI	GCCGGC	1 cut(s)	320
KroNI	GCCGGC	1 cut(s)	322
Ksp22I	TGATCA	1 cut(s)	603
KspAI	GTTAAC	1 cut(s)	406
Kzo9I	GATC	3 cut(s)	159, 474, 603
LmnI	GCTCC	3 cut(s)	491, 516, 897
Lsp1109I	GCAGC	8 cut(s)	109, 197, 230, 319, 322, 820, 854, 901
LweI	GCATC	3 cut(s)	27, 314, 749
MaeI	CTAG	1 cut(s)	341
MaeII	ACGT	1 cut(s)	29
MaeIII	GTNAC	2 cut(s)	59, 415
MalI	GATC	3 cut(s)	161, 476, 605
MbiI	CCGCTC	1 cut(s)	47
MboI	GATC	3 cut(s)	159, 474, 603
MboII	GAAGA	1 cut(s)	856
MhlI	GDGCHC	1 cut(s)	861
MlsI	TGGCCA	1 cut(s)	441
MluCI	AATT	2 cut(s)	168, 597
MluNI	TGGCCA	1 cut(s)	441
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	550
MnlI	CCTC	4 cut(s)	119, 254, 524, 602
Mox20I	TGGCCA	1 cut(s)	441
MroNI	GCCGGC	1 cut(s)	320
MscI	TGGCCA	1 cut(s)	441
MseI	TTAA	2 cut(s)	138, 405
Msp20I	TGGCCA	1 cut(s)	441
MspA1I	CMGCKG	3 cut(s)	188, 773, 783
MspI	CCGG	6 cut(s)	10, 317, 321, 393, 528, 723
MwoI	GCNNNNNNNGC	9 cut(s)	97, 215, 224, 341, 500, 666, 683, 839, 842
NaeI	GCCGGC	1 cut(s)	322
NdeII	GATC	3 cut(s)	159, 474, 603
NgoMIV	GCCGGC	1 cut(s)	320
NlaIII	CATG	5 cut(s)	209, 280, 404, 748, 792
NlaIV	GGNNCC	7 cut(s)	14, 43, 427, 493, 670, 706, 727
NmuCI	GTSAC	2 cut(s)	59, 415
NspI	RCATGY	1 cut(s)	404
PcsI	WCGNNNNNNNCGW	1 cut(s)	639
PdiI	GCCGGC	1 cut(s)	322
PinAI	ACCGGT	1 cut(s)	527
PkrI	GCNGC	9 cut(s)	99, 187, 220, 334, 337, 382, 835, 844, 891
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp124BI	GAGCTC	1 cut(s)	861
PspFI	CCCAGC	1 cut(s)	769
PspN4I	GGNNCC	7 cut(s)	14, 43, 427, 493, 670, 706, 727
PspPI	GGNCC	4 cut(s)	12, 589, 767, 818
PvuII	CAGCTG	3 cut(s)	188, 773, 783
RigI	GGCCGGCC	1 cut(s)	324
RsaI	GTAC	2 cut(s)	470, 632
RsaNI	GTAC	2 cut(s)	469, 631
SacI	GAGCTC	1 cut(s)	861
SaqAI	TTAA	2 cut(s)	138, 405
SatI	GCNGC	9 cut(s)	98, 186, 219, 333, 336, 381, 834, 843, 890
Sau3AI	GATC	3 cut(s)	159, 474, 603
Sau96I	GGNCC	4 cut(s)	12, 589, 767, 818
SchI	GAGTC	1 cut(s)	62
SduI	GDGCHC	1 cut(s)	861
SfaNI	GCATC	3 cut(s)	27, 314, 749
SinI	GGWCC	3 cut(s)	12, 589, 818
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	2 cut(s)	168, 597
SsiI	CCGC	5 cut(s)	16, 45, 381, 396, 753
SspMI	CTAG	1 cut(s)	341
SstI	GAGCTC	1 cut(s)	861
TaaI	ACNGT	6 cut(s)	7, 59, 120, 302, 628, 737
TaiI	ACGT	1 cut(s)	32
TaqI	TCGA	3 cut(s)	143, 150, 594
TasI	AATT	2 cut(s)	168, 597
TatI	WGTACW	1 cut(s)	468
TauI	GCSGC	1 cut(s)	383
Tru1I	TTAA	2 cut(s)	138, 405
Tru9I	TTAA	2 cut(s)	138, 405
TscAI	CASTG	4 cut(s)	180, 301, 307, 806
TseFI	GTSAC	2 cut(s)	59, 415
TseI	GCWGC	8 cut(s)	97, 185, 218, 332, 335, 833, 842, 889
Tsp45I	GTSAC	2 cut(s)	59, 415
TspDTI	ATGAA	6 cut(s)	223, 421, 685, 761, 814, 856
TspRI	CASTG	4 cut(s)	180, 301, 307, 806
VpaK11BI	GGWCC	3 cut(s)	12, 589, 818
XceI	RCATGY	1 cut(s)	404
XmiI	GTMKAC	3 cut(s)	645, 807, 852
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.