Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003756

Physical Location & Seq

Genomic Coordinates Forward (+)

30163609 .. 30165327

Gene Structure 1719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g34940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGCCGATCTCTAGCATTGCAGTGGGAAGCCCATCTGAGTTCGGGAGCGTCGACGCTCTTAGAGCAGCTCTTGCTGAGTTCATCTCCACCCTCATCTTTGTTTTCGCCGGCTCCGGTTCAGGCGTAGCTTTCGCCGAGCTCACAGACAATGGAGCTACCACACCCGCCGGCCTCGTAGCCGCAGCCATAGCGCATGCCTTTGCCCTTTTCGTTGCGGTTGCCATCGCAGCAAACATCTCCGGCGGCCATGTCAACCCCGCTGTCACATTCGGTGCCTTCCTTGGCGGCAACATTACTCTCGTCAGGAGTATCTTGTACTGGATTGCCCAGCTTCTCGGATCCGTTGTTGCTTGCTTGCTCCTCAAGTTTGCTACCGGTGGAATGACCATCTCTGCCTTCTCCCTATCGACTGGTGTTGGAGTATGGAACGCAGTGGTGTTCGAAATCGTGATGACCTTCGGTTTGGTATACACCGTGTACGCAACCGCCCTCGACAAGAGGTCCGCCGGAAACATCAGCATCATTGCACCAATTGCCATTGGTTTCATTGTTGGAGCTAACATCTTGGCCGGTGGTGCTTTTGACGGTGCTTCAATGAACCCAGCAGTCTCATTCGGACCCGCCGTCGTCAGCTGGTCATGGGAAAGCCACTGGGTCTACTGGCTCGGGCCATTCCTCGGTGCCGGCATTGCTGCCCTCATCTACGACTGGATCTTCATCGGCCCAGCCACCCACGAGCCACTACCCACCACAGACTACTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0009705 GO:0015204 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042807 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

255

Amino Acids

25.97

Weight (kDa)

4.72

Isoelectric Point (pI)

35.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	14 - 235	3.1e-76	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36830 AT3G26520
fragaria_vesca	FvH4_3g34940 FvH4_3g34940 FvH4_6g16770 FvH4_7g03120
malus_domestica	MD03G1100200.v1.1
prunus_persica	Prupe.6G085200_v2.0.a1 Prupe.7G125900_v2.0.a1
pyrus_communis	pycom03g08240 pycom11g09610 pycom12g10750
rosa_chinensis	RchiOBHm_Chr3g0470701 RchiOBHm_Chr5g0062791
rosa_laevigata	RLG00000024246 RLG00000035580
rosa_multiflora	Rmu_co8269841.1_g000001 Rmu_sc0002790.1_g000002 Rmu_sc0006168.1_g000020 Rmu_ssc0000472.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017830 Rroxscaffold_6G00410570
rosa_rugosa	Rorug03G0112300 Rorug05G0351600
rosa_samantha	Rh3AG161800 Rh3BG186400 Rh3CG176700 Rh3DG188800 Rh5AG412900 Rh5BG426800 Rh5CG450700 Rh5DG440700
rosa_wichuraiana	Rw0G004640 Rw5G038800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	272, 680
AccI	GTMKAC	3 cut(s)	51, 468, 657
AciI	CCGC	9 cut(s)	165, 180, 215, 243, 258, 285, 486, 504, 621
AclWI	GGATC	3 cut(s)	333, 346, 719
AcoI	YGGCCR	2 cut(s)	244, 567
AfaI	GTAC	2 cut(s)	317, 479
AfiI	CCNNNNNNNGG	1 cut(s)	677
AgeI	ACCGGT	1 cut(s)	374
AgsI	TTSAA	1 cut(s)	594
AhdI	GACNNNNNGTC	2 cut(s)	499, 623
AluBI	AGCT	7 cut(s)	68, 128, 139, 155, 331, 557, 633
AluI	AGCT	7 cut(s)	68, 128, 139, 155, 331, 557, 633
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	1 cut(s)	613
AlwI	GGATC	3 cut(s)	333, 346, 719
Ama87I	CYCGRG	1 cut(s)	665
AoxI	GGCC	5 cut(s)	169, 244, 567, 668, 721
ApeKI	GCWGC	4 cut(s)	65, 182, 227, 692
ArsI	GACNNNNNNTTYG	2 cut(s)	445, 477
AsiGI	ACCGGT	1 cut(s)	374
AspLEI	GCGC	1 cut(s)	193
AspS9I	GGNCC	4 cut(s)	501, 617, 668, 722
AsuII	TTCGAA	1 cut(s)	441
AvaI	CYCGRG	1 cut(s)	665
AvaII	GGWCC	2 cut(s)	501, 617
BamHI	GGATCC	1 cut(s)	338
BanI	GGYRCC	2 cut(s)	272, 680
BanII	GRGCYC	1 cut(s)	141
BauI	CACGAG	1 cut(s)	734
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	4 cut(s)	77, 194, 239, 679
BccI	CCATC	3 cut(s)	40, 230, 395
BceAI	ACGGC	1 cut(s)	608
BcoDI	GTCTC	1 cut(s)	613
BfaI	CTAG	1 cut(s)	12
BisI	GCNGC	7 cut(s)	66, 180, 183, 228, 244, 286, 693
BlsI	GCNGC	7 cut(s)	67, 181, 184, 229, 245, 287, 694
Bme18I	GGWCC	2 cut(s)	501, 617
BmeRI	GACNNNNNGTC	2 cut(s)	499, 623
BmeT110I	CYCGRG	1 cut(s)	665
BmgT120I	GGNCC	4 cut(s)	501, 617, 668, 722
BmiI	GGNNCC	5 cut(s)	112, 274, 340, 619, 682
BmrI	ACTGGG	1 cut(s)	661
BmsI	GCATC	1 cut(s)	528
BmuI	ACTGGG	1 cut(s)	661
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
Bpu14I	TTCGAA	1 cut(s)	441
BpuEI	CTTGAG	1 cut(s)	347
BsaBI	GATNNNNATC	1 cut(s)	716
BsaJI	CCNNGG	2 cut(s)	280, 676
BsaWI	WCCGGW	2 cut(s)	113, 374
Bsc4I	CCNNNNNNNGG	1 cut(s)	677
Bse118I	RCCGGY	5 cut(s)	107, 167, 374, 569, 683
Bse1I	ACTGG	5 cut(s)	323, 415, 656, 665, 713
Bse3DI	GCAATG	3 cut(s)	15, 522, 687
Bse8I	GATNNNNATC	1 cut(s)	716
BseDI	CCNNGG	2 cut(s)	280, 676
BseJI	GATNNNNATC	1 cut(s)	716
BseLI	CCNNNNNNNGG	1 cut(s)	677
BseMI	GCAATG	3 cut(s)	15, 522, 687
BseMII	CTCAG	2 cut(s)	27, 66
BseNI	ACTGG	5 cut(s)	323, 415, 656, 665, 713
BseRI	GAGGAG	1 cut(s)	350
BseXI	GCAGC	4 cut(s)	77, 194, 239, 679
BseYI	CCCAGC	3 cut(s)	327, 601, 724
BshFI	GGCC	5 cut(s)	171, 246, 569, 670, 723
BshNI	GGYRCC	2 cut(s)	272, 680
BshTI	ACCGGT	1 cut(s)	374
BsiHKAI	GWGCWC	1 cut(s)	141
BsiHKCI	CYCGRG	1 cut(s)	665
BsiSI	CCGG	8 cut(s)	108, 114, 168, 240, 375, 507, 570, 684
BslI	CCNNNNNNNGG	1 cut(s)	677
BsmAI	GTCTC	1 cut(s)	613
BsnI	GGCC	5 cut(s)	171, 246, 569, 670, 723
BsoBI	CYCGRG	1 cut(s)	665
Bsp119I	TTCGAA	1 cut(s)	441
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	3 cut(s)	6, 338, 711
BspACI	CCGC	9 cut(s)	165, 180, 215, 243, 258, 285, 486, 504, 621
BspANI	GGCC	5 cut(s)	171, 246, 569, 670, 723
BspCNI	CTCAG	2 cut(s)	28, 67
BspLI	GGNNCC	5 cut(s)	112, 274, 340, 619, 682
BspPI	GGATC	3 cut(s)	333, 346, 719
BspT104I	TTCGAA	1 cut(s)	441
BspT107I	GGYRCC	2 cut(s)	272, 680
BsrDI	GCAATG	3 cut(s)	15, 522, 687
BsrFI	RCCGGY	5 cut(s)	107, 167, 374, 569, 683
BsrI	ACTGG	5 cut(s)	323, 415, 656, 665, 713
BssAI	RCCGGY	5 cut(s)	107, 167, 374, 569, 683
BssECI	CCNNGG	2 cut(s)	280, 676
BssMI	GATC	3 cut(s)	6, 338, 711
BssNAI	GTATAC	1 cut(s)	469
BssSI	CACGAG	1 cut(s)	734
BssT1I	CCWWGG	1 cut(s)	280
Bst1107I	GTATAC	1 cut(s)	469
Bst2BI	CACGAG	1 cut(s)	734
Bst4CI	ACNGT	2 cut(s)	475, 587
BstAPI	GCANNNNNTGC	2 cut(s)	71, 533
BstBI	TTCGAA	1 cut(s)	441
BstC8I	GCNNGC	6 cut(s)	109, 169, 195, 352, 356, 685
BstDEI	CTNAG	3 cut(s)	36, 59, 75
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	3 cut(s)	9, 341, 714
BstMAI	GTCTC	1 cut(s)	613
BstMBI	GATC	3 cut(s)	6, 338, 711
BstMWI	GCNNNNNNNGC	7 cut(s)	62, 71, 188, 227, 533, 575, 689
BstNSI	RCATGY	1 cut(s)	197
BstV1I	GCAGC	4 cut(s)	77, 194, 239, 679
BstX2I	RGATCY	2 cut(s)	338, 711
BstYI	RGATCY	2 cut(s)	338, 711
BstZ17I	GTATAC	1 cut(s)	469
BsuRI	GGCC	5 cut(s)	171, 246, 569, 670, 723
BtgZI	GCGATG	1 cut(s)	208
BtsI	GCAGTG	2 cut(s)	27, 438
BtsIMutI	CAGTG	3 cut(s)	27, 438, 649
Cac8I	GCNNGC	6 cut(s)	109, 169, 195, 352, 356, 685
CfoI	GCGC	1 cut(s)	193
Cfr10I	RCCGGY	5 cut(s)	107, 167, 374, 569, 683
Cfr13I	GGNCC	4 cut(s)	501, 617, 668, 722
CseI	GACGC	2 cut(s)	37, 62
Csp6I	GTAC	2 cut(s)	316, 478
CspAI	ACCGGT	1 cut(s)	374
CviAII	CATG	3 cut(s)	194, 248, 639
CviQI	GTAC	2 cut(s)	316, 478
DdeI	CTNAG	3 cut(s)	36, 59, 75
DpnI	GATC	3 cut(s)	8, 340, 713
DpnII	GATC	3 cut(s)	6, 338, 711
DriI	GACNNNNNGTC	2 cut(s)	499, 623
EaeI	YGGCCR	2 cut(s)	244, 567
Eam1105I	GACNNNNNGTC	2 cut(s)	499, 623
EciI	GGCGGA	1 cut(s)	493
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	2 cut(s)	501, 617
Eco53kI	GAGCTC	1 cut(s)	139
Eco88I	CYCGRG	1 cut(s)	665
EcoICRI	GAGCTC	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	3 cut(s)	197, 251, 642
FaiI	YATR	6 cut(s)	188, 195, 249, 424, 469, 640
FatI	CATG	3 cut(s)	193, 247, 638
FauI	CCCGC	3 cut(s)	172, 265, 628
FblI	GTMKAC	3 cut(s)	51, 468, 657
Fnu4HI	GCNGC	7 cut(s)	66, 180, 183, 228, 244, 286, 693
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	7 cut(s)	66, 180, 183, 228, 244, 286, 693
FspBI	CTAG	1 cut(s)	12
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	7 cut(s)	66, 180, 183, 228, 244, 286, 693
GsaI	CCCAGC	3 cut(s)	331, 605, 728
HaeIII	GGCC	5 cut(s)	171, 246, 569, 670, 723
HapII	CCGG	8 cut(s)	108, 114, 168, 240, 375, 507, 570, 684
HgaI	GACGC	2 cut(s)	37, 62
HhaI	GCGC	1 cut(s)	193
Hin1II	CATG	3 cut(s)	197, 251, 642
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HincII	GTYRAC	2 cut(s)	52, 253
HindII	GTYRAC	2 cut(s)	52, 253
HpaII	CCGG	8 cut(s)	108, 114, 168, 240, 375, 507, 570, 684
Hpy166II	GTNNAC	5 cut(s)	52, 253, 469, 478, 658
Hpy188I	TCNGA	3 cut(s)	37, 338, 617
Hpy188III	TCNNGA	3 cut(s)	43, 304, 448
Hpy8I	GTNNAC	5 cut(s)	52, 253, 469, 478, 658
Hpy99I	CGWCG	3 cut(s)	53, 56, 629
HpyAV	CCTTC	3 cut(s)	286, 406, 466
HpyCH4III	ACNGT	2 cut(s)	475, 587
HpyCH4V	TGCA	2 cut(s)	20, 527
HpyF10VI	GCNNNNNNNGC	7 cut(s)	62, 71, 188, 227, 533, 575, 689
HpyF3I	CTNAG	3 cut(s)	36, 59, 75
Hsp92II	CATG	3 cut(s)	197, 251, 642
HspAI	GCGC	1 cut(s)	191
KroI	GCCGGC	3 cut(s)	107, 167, 683
KroNI	GCCGGC	3 cut(s)	109, 169, 685
Kzo9I	GATC	3 cut(s)	6, 338, 711
LmnI	GCTCC	5 cut(s)	45, 116, 152, 363, 554
Lsp1109I	GCAGC	4 cut(s)	77, 194, 239, 679
LweI	GCATC	1 cut(s)	528
MaeI	CTAG	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	3 cut(s)	8, 340, 713
MboI	GATC	3 cut(s)	6, 338, 711
MboII	GAAGA	1 cut(s)	706
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	2 cut(s)	338, 711
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	1 cut(s)	531
MmeI	TCCRAC	2 cut(s)	397, 532
MnlI	CCTC	7 cut(s)	101, 182, 371, 492, 500, 686, 707
MroNI	GCCGGC	3 cut(s)	107, 167, 683
MslI	CAYNNNNRTG	1 cut(s)	20
MspA1I	CMGCKG	2 cut(s)	260, 633
MspI	CCGG	8 cut(s)	108, 114, 168, 240, 375, 507, 570, 684
MunI	CAATTG	1 cut(s)	531
MwoI	GCNNNNNNNGC	7 cut(s)	62, 71, 188, 227, 533, 575, 689
NaeI	GCCGGC	3 cut(s)	109, 169, 685
NdeII	GATC	3 cut(s)	6, 338, 711
NgoMIV	GCCGGC	3 cut(s)	107, 167, 683
NlaIII	CATG	3 cut(s)	197, 251, 642
NlaIV	GGNNCC	5 cut(s)	112, 274, 340, 619, 682
NmeAIII	GCCGAG	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	262
NspI	RCATGY	1 cut(s)	197
NspV	TTCGAA	1 cut(s)	441
PaeI	GCATGC	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 621
PdiI	GCCGGC	3 cut(s)	109, 169, 685
PinAI	ACCGGT	1 cut(s)	374
PkrI	GCNGC	7 cut(s)	67, 181, 184, 229, 245, 287, 694
Psp124BI	GAGCTC	1 cut(s)	141
PspFI	CCCAGC	3 cut(s)	327, 601, 724
PspN4I	GGNNCC	5 cut(s)	112, 274, 340, 619, 682
PspPI	GGNCC	4 cut(s)	501, 617, 668, 722
PsuI	RGATCY	2 cut(s)	338, 711
PvuII	CAGCTG	1 cut(s)	633
RsaI	GTAC	2 cut(s)	317, 479
RsaNI	GTAC	2 cut(s)	316, 478
RseI	CAYNNNNRTG	1 cut(s)	20
SacI	GAGCTC	1 cut(s)	141
SalI	GTCGAC	1 cut(s)	50
SatI	GCNGC	7 cut(s)	66, 180, 183, 228, 244, 286, 693
Sau3AI	GATC	3 cut(s)	6, 338, 711
Sau96I	GGNCC	4 cut(s)	501, 617, 668, 722
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	9 cut(s)	70, 130, 141, 157, 333, 458, 503, 559, 635
SfaNI	GCATC	1 cut(s)	528
SfuI	TTCGAA	1 cut(s)	441
SgrDI	CGTCGACG	1 cut(s)	50
SinI	GGWCC	2 cut(s)	501, 617
SmiMI	CAYNNNNRTG	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
SphI	GCATGC	1 cut(s)	197
Sse9I	AATT	1 cut(s)	531
SsiI	CCGC	9 cut(s)	165, 180, 215, 243, 258, 285, 486, 504, 621
SspMI	CTAG	1 cut(s)	12
SstI	GAGCTC	1 cut(s)	141
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	2 cut(s)	475, 587
TaqI	TCGA	4 cut(s)	51, 407, 441, 492
TasI	AATT	1 cut(s)	531
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	3 cut(s)	182, 246, 288
TscAI	CASTG	3 cut(s)	27, 438, 656
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	4 cut(s)	65, 182, 227, 692
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	4 cut(s)	70, 535, 611, 706
TspGWI	ACGGA	1 cut(s)	331
TspRI	CASTG	3 cut(s)	27, 438, 656
VpaK11BI	GGWCC	2 cut(s)	501, 617
XceI	RCATGY	1 cut(s)	197
XmiI	GTMKAC	3 cut(s)	51, 468, 657
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.