Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003756

Physical Location & Seq

Genomic Coordinates Reverse (-)

9722443 .. 9723904

Gene Structure 1462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G26520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGCCGACCAGAAACATCGCCATTGGTGGAGTCCAAGAAGAGGTCTATCACCCCAACGCACTTAGGGCGGCGCTCGCTGAGTTTATCTCGACTTTGATCTTCGTCTTCGCCGGCTCAGGCTCCGGAATTGCTTTCAACAAGATCACTGACAATGGAGCAACCACTCCTTCCGGCCTCGTCGCCGCTGCCTTAGCTCATGCTTTCGGTCTCTTTGTCGCTGTCTCTGTTGGCGCTAACATTTCCGGTGGCCACGTTAACCCTGCCGTTACCTTCGGTGTCTTACTCGGTGGTAACATCACTCTCCTCCGTGGTATTCTCTACTGGATTGCTCAGCTTCTTGGCTCCGTCGCCGCTTGTTTCCTCCTTAGCTTTGCCACCGGTGGCGAGCCAATTCCAGCGTTCGGTCTCTCTGCCGGAGTCGGATCATTAAACGCTCTCGTCTTCGAGATCGTGATGACCTTCGGGCTCGTCTACACCGTCTACGCCACAGCCGTTGACCCCAAGAACGGTAGTCTCGGAACAATCGCACCAATCGCCATAGGTTTCATCGTTGGAGCTAACATCCTCGCCGGTGGAGCTTTCAGCGGAGCTTCCATGAACCCAGCCGTTGCTTTCGGACCAGCCGTCGTAAGCTGGACGTGGACCAACCACTGGGTTTACTGGGCTGGTCCTCTTATTGGTGGTGGACTCGCCGGAATTATCTACGACTTTGTCTTCATCGATGAAAATGCCCACGAGCAATTGCCTACCACCGATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0006855 GO:0006950 GO:0006952 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009705 GO:0009941 GO:0012505 GO:0015204 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0015893 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0030104 GO:0031012 GO:0031090 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042221 GO:0042493 GO:0042592 GO:0042742 GO:0042807 GO:0042886 GO:0042887 GO:0042891 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043667 GO:0043668 GO:0043673 GO:0043674 GO:0044420 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048878 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0080170 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

253

Amino Acids

25.85

Weight (kDa)

4.92

Isoelectric Point (pI)

25.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	17 - 235	6.5e-78	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36830 AT3G26520
fragaria_vesca	FvH4_3g34940 FvH4_3g34940 FvH4_6g16770 FvH4_7g03120
malus_domestica	MD03G1100200.v1.1
prunus_persica	Prupe.6G085200_v2.0.a1 Prupe.7G125900_v2.0.a1
pyrus_communis	pycom03g08240 pycom11g09610 pycom12g10750
rosa_chinensis	RchiOBHm_Chr3g0470701 RchiOBHm_Chr5g0062791
rosa_laevigata	RLG00000024246 RLG00000035580
rosa_multiflora	Rmu_co8269841.1_g000001 Rmu_sc0002790.1_g000002 Rmu_sc0006168.1_g000020 Rmu_ssc0000472.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017830 Rroxscaffold_6G00410570
rosa_rugosa	Rorug03G0112300 Rorug05G0351600
rosa_samantha	Rh3AG161800 Rh3BG186400 Rh3CG176700 Rh3DG188800 Rh5AG412900 Rh5BG426800 Rh5CG450700 Rh5DG440700
rosa_wichuraiana	Rw0G004640 Rw5G038800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	651
AccI	GTMKAC	2 cut(s)	471, 480
AccIII	TCCGGA	1 cut(s)	122
AciI	CCGC	4 cut(s)	68, 183, 351, 585
AclWI	GGATC	1 cut(s)	430
AcoI	YGGCCR	1 cut(s)	247
AfiI	CCNNNNNNNGG	5 cut(s)	40, 401, 506, 651, 677
AgeI	ACCGGT	1 cut(s)	377
AgsI	TTSAA	1 cut(s)	136
AhdI	GACNNNNNGTC	1 cut(s)	623
AjiI	CACGTC	1 cut(s)	639
AluBI	AGCT	7 cut(s)	194, 334, 369, 557, 578, 590, 633
AluI	AGCT	7 cut(s)	194, 334, 369, 557, 578, 590, 633
Alw26I	GTCTC	4 cut(s)	212, 226, 410, 518
AlwI	GGATC	1 cut(s)	430
Aor13HI	TCCGGA	1 cut(s)	122
AoxI	GGCC	2 cut(s)	172, 247
ApeKI	GCWGC	1 cut(s)	185
AsiGI	ACCGGT	1 cut(s)	377
AspLEI	GCGC	2 cut(s)	73, 233
AspS9I	GGNCC	3 cut(s)	617, 642, 668
AsuHPI	GGTGA	1 cut(s)	41
AvaII	GGWCC	3 cut(s)	617, 642, 668
BalI	TGGCCA	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	468
BauI	CACGAG	1 cut(s)	734
BbsI	GAAGAC	3 cut(s)	97, 433, 706
BbvI	GCAGC	1 cut(s)	172
BceAI	ACGGC	4 cut(s)	248, 476, 590, 608
BcgI	CGANNNNNNTGC	2 cut(s)	710, 744
BcoDI	GTCTC	4 cut(s)	212, 226, 410, 518
BfoI	RGCGCY	2 cut(s)	74, 234
BisI	GCNGC	4 cut(s)	69, 183, 186, 351
BlpI	GCTNAGC	1 cut(s)	330
BlsI	GCNGC	4 cut(s)	70, 184, 187, 352
Bme18I	GGWCC	3 cut(s)	617, 642, 668
BmeRI	GACNNNNNGTC	1 cut(s)	623
BmgBI	CACGTC	1 cut(s)	639
BmgT120I	GGNCC	3 cut(s)	617, 642, 668
BmiI	GGNNCC	2 cut(s)	121, 343
BmrI	ACTGGG	2 cut(s)	661, 670
BmuI	ACTGGG	2 cut(s)	661, 670
BpiI	GAAGAC	3 cut(s)	97, 433, 706
BplI	GAGNNNNNCTC	2 cut(s)	71, 103
Bpu10I	CCTNAGC	3 cut(s)	115, 190, 365
Bpu1102I	GCTNAGC	1 cut(s)	330
Bsa29I	ATCGAT	1 cut(s)	720
BsaI	GGTCTC	2 cut(s)	212, 410
BsaJI	CCNNGG	1 cut(s)	307
BsaWI	WCCGGW	3 cut(s)	122, 242, 377
Bsc4I	CCNNNNNNNGG	5 cut(s)	40, 401, 506, 651, 677
Bse118I	RCCGGY	3 cut(s)	110, 377, 569
Bse1I	ACTGG	3 cut(s)	326, 656, 665
BseAI	TCCGGA	1 cut(s)	122
BseCI	ATCGAT	1 cut(s)	720
BseDI	CCNNGG	1 cut(s)	307
BseGI	GGATG	1 cut(s)	561
BseLI	CCNNNNNNNGG	5 cut(s)	40, 401, 506, 651, 677
BseMII	CTCAG	3 cut(s)	69, 129, 344
BseNI	ACTGG	3 cut(s)	326, 656, 665
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	172
BseYI	CCCAGC	1 cut(s)	601
BshFI	GGCC	2 cut(s)	174, 249
BshTI	ACCGGT	1 cut(s)	377
BshVI	ATCGAT	1 cut(s)	720
BsiSI	CCGG	8 cut(s)	111, 123, 171, 243, 378, 414, 570, 693
BslI	CCNNNNNNNGG	5 cut(s)	40, 401, 506, 651, 677
BsmAI	GTCTC	4 cut(s)	212, 226, 410, 518
BsnI	GGCC	2 cut(s)	174, 249
Bso31I	GGTCTC	2 cut(s)	212, 410
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp13I	TCCGGA	1 cut(s)	122
Bsp143I	GATC	4 cut(s)	96, 141, 422, 447
Bsp1720I	GCTNAGC	1 cut(s)	330
BspACI	CCGC	4 cut(s)	68, 183, 351, 585
BspANI	GGCC	2 cut(s)	174, 249
BspCNI	CTCAG	3 cut(s)	70, 128, 343
BspDI	ATCGAT	1 cut(s)	720
BspEI	TCCGGA	1 cut(s)	122
BspLI	GGNNCC	2 cut(s)	121, 343
BspPI	GGATC	1 cut(s)	430
BspTNI	GGTCTC	2 cut(s)	212, 410
BsrFI	RCCGGY	3 cut(s)	110, 377, 569
BsrI	ACTGG	3 cut(s)	326, 656, 665
BssAI	RCCGGY	3 cut(s)	110, 377, 569
BssECI	CCNNGG	1 cut(s)	307
BssMI	GATC	4 cut(s)	96, 141, 422, 447
BssSI	CACGAG	1 cut(s)	734
Bst2BI	CACGAG	1 cut(s)	734
Bst4CI	ACNGT	2 cut(s)	478, 509
Bst6I	CTCTTC	1 cut(s)	33
BstC8I	GCNNGC	3 cut(s)	75, 112, 386
BstDEI	CTNAG	6 cut(s)	62, 78, 115, 190, 330, 365
BstDSI	CCRYGG	1 cut(s)	307
BstF5I	GGATG	1 cut(s)	561
BstH2I	RGCGCY	2 cut(s)	74, 234
BstHHI	GCGC	2 cut(s)	73, 233
BstKTI	GATC	4 cut(s)	99, 144, 425, 450
BstMAI	GTCTC	4 cut(s)	212, 226, 410, 518
BstMBI	GATC	4 cut(s)	96, 141, 422, 447
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 74, 191, 533, 575
BstV1I	GCAGC	1 cut(s)	172
BstV2I	GAAGAC	3 cut(s)	97, 433, 706
Bsu15I	ATCGAT	1 cut(s)	720
BsuRI	GGCC	2 cut(s)	174, 249
BsuTUI	ATCGAT	1 cut(s)	720
BtgI	CCRYGG	1 cut(s)	307
BtrI	CACGTC	1 cut(s)	639
BtsCI	GGATG	1 cut(s)	561
BtsIMutI	CAGTG	2 cut(s)	144, 649
Cac8I	GCNNGC	3 cut(s)	75, 112, 386
CfoI	GCGC	2 cut(s)	73, 233
Cfr10I	RCCGGY	3 cut(s)	110, 377, 569
Cfr13I	GGNCC	3 cut(s)	617, 642, 668
ClaI	ATCGAT	1 cut(s)	720
CspAI	ACCGGT	1 cut(s)	377
CspCI	CAANNNNNGTGG	2 cut(s)	475, 510
CviAII	CATG	2 cut(s)	197, 595
DdeI	CTNAG	6 cut(s)	62, 78, 115, 190, 330, 365
DpnI	GATC	4 cut(s)	98, 143, 424, 449
DpnII	GATC	4 cut(s)	96, 141, 422, 447
DriI	GACNNNNNGTC	1 cut(s)	623
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	33
Eam1105I	GACNNNNNGTC	1 cut(s)	623
EarI	CTCTTC	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	468
Eco31I	GGTCTC	2 cut(s)	212, 410
Eco47I	GGWCC	3 cut(s)	617, 642, 668
EcoT38I	GRGCYC	1 cut(s)	468
FaeI	CATG	2 cut(s)	200, 598
FaiI	YATR	3 cut(s)	198, 539, 596
FatI	CATG	2 cut(s)	196, 594
FblI	GTMKAC	2 cut(s)	471, 480
Fnu4HI	GCNGC	4 cut(s)	69, 183, 186, 351
FokI	GGATG	1 cut(s)	548
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	4 cut(s)	69, 183, 186, 351
GlaI	GCGC	2 cut(s)	72, 232
GluI	GCNGC	4 cut(s)	69, 183, 186, 351
GsaI	CCCAGC	1 cut(s)	605
HaeII	RGCGCY	2 cut(s)	74, 234
HaeIII	GGCC	2 cut(s)	174, 249
HapII	CCGG	8 cut(s)	111, 123, 171, 243, 378, 414, 570, 693
HhaI	GCGC	2 cut(s)	73, 233
Hin1II	CATG	2 cut(s)	200, 598
Hin6I	GCGC	2 cut(s)	71, 231
HinP1I	GCGC	2 cut(s)	71, 231
HincII	GTYRAC	2 cut(s)	256, 496
HindII	GTYRAC	2 cut(s)	256, 496
HinfI	GANTC	3 cut(s)	30, 417, 687
HpaI	GTTAAC	1 cut(s)	256
HpaII	CCGG	8 cut(s)	111, 123, 171, 243, 378, 414, 570, 693
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	7 cut(s)	256, 472, 481, 496, 642, 658, 686
Hpy188I	TCNGA	3 cut(s)	422, 518, 617
Hpy188III	TCNNGA	4 cut(s)	88, 123, 445, 451
Hpy8I	GTNNAC	7 cut(s)	256, 472, 481, 496, 642, 658, 686
Hpy99I	CGWCG	3 cut(s)	182, 350, 629
HpyAV	CCTTC	3 cut(s)	177, 280, 469
HpyCH4III	ACNGT	2 cut(s)	478, 509
HpyCH4IV	ACGT	2 cut(s)	252, 638
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 74, 191, 533, 575
HpyF3I	CTNAG	6 cut(s)	62, 78, 115, 190, 330, 365
HpySE526I	ACGT	2 cut(s)	252, 638
Hsp92II	CATG	2 cut(s)	200, 598
HspAI	GCGC	2 cut(s)	71, 231
Kpn2I	TCCGGA	1 cut(s)	122
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
KspAI	GTTAAC	1 cut(s)	256
Kzo9I	GATC	4 cut(s)	96, 141, 422, 447
LmnI	GCTCC	6 cut(s)	125, 155, 347, 554, 575, 587
Lsp1109I	GCAGC	1 cut(s)	172
MaeII	ACGT	2 cut(s)	252, 638
MaeIII	GTNAC	2 cut(s)	265, 290
MalI	GATC	4 cut(s)	98, 143, 424, 449
MboI	GATC	4 cut(s)	96, 141, 422, 447
MboII	GAAGA	5 cut(s)	50, 91, 97, 433, 706
MfeI	CAATTG	1 cut(s)	740
MhlI	GDGCHC	1 cut(s)	468
MlsI	TGGCCA	1 cut(s)	249
MluCI	AATT	4 cut(s)	126, 390, 696, 740
MluNI	TGGCCA	1 cut(s)	249
MlyI	GAGTC	3 cut(s)	39, 426, 681
MmeI	TCCRAC	2 cut(s)	400, 532
MnlI	CCTC	6 cut(s)	34, 185, 314, 371, 575, 681
Mox20I	TGGCCA	1 cut(s)	249
MroI	TCCGGA	1 cut(s)	122
MroNI	GCCGGC	1 cut(s)	110
MscI	TGGCCA	1 cut(s)	249
MseI	TTAA	2 cut(s)	255, 428
Msp20I	TGGCCA	1 cut(s)	249
MspA1I	CMGCKG	2 cut(s)	185, 585
MspI	CCGG	8 cut(s)	111, 123, 171, 243, 378, 414, 570, 693
MunI	CAATTG	1 cut(s)	740
MwoI	GCNNNNNNNGC	5 cut(s)	65, 74, 191, 533, 575
NaeI	GCCGGC	1 cut(s)	112
NdeII	GATC	4 cut(s)	96, 141, 422, 447
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	2 cut(s)	200, 598
NlaIV	GGNNCC	2 cut(s)	121, 343
PcsI	WCGNNNNNNNCGW	3 cut(s)	474, 489, 621
PdiI	GCCGGC	1 cut(s)	112
PflFI	GACNNNGTC	1 cut(s)	710
PflMI	CCANNNNNTGG	1 cut(s)	651
PinAI	ACCGGT	1 cut(s)	377
PkrI	GCNGC	4 cut(s)	70, 184, 187, 352
PleI	GAGTC	3 cut(s)	38, 425, 681
PpsI	GAGTC	3 cut(s)	38, 425, 681
PspFI	CCCAGC	1 cut(s)	601
PspN4I	GGNNCC	2 cut(s)	121, 343
PspPI	GGNCC	3 cut(s)	617, 642, 668
PsyI	GACNNNGTC	1 cut(s)	710
SaqAI	TTAA	2 cut(s)	255, 428
SatI	GCNGC	4 cut(s)	69, 183, 186, 351
Sau3AI	GATC	4 cut(s)	96, 141, 422, 447
Sau96I	GGNCC	3 cut(s)	617, 642, 668
SchI	GAGTC	3 cut(s)	39, 426, 681
SduI	GDGCHC	1 cut(s)	468
SgrAI	CRCCGGYG	2 cut(s)	377, 569
SinI	GGWCC	3 cut(s)	617, 642, 668
Sse9I	AATT	4 cut(s)	126, 390, 696, 740
SsiI	CCGC	4 cut(s)	68, 183, 351, 585
TaaI	ACNGT	2 cut(s)	478, 509
TaiI	ACGT	2 cut(s)	255, 641
TaqI	TCGA	3 cut(s)	89, 444, 720
TaqII	GACCGA	2 cut(s)	194, 392
TasI	AATT	4 cut(s)	126, 390, 696, 740
TauI	GCSGC	3 cut(s)	71, 185, 353
Tru1I	TTAA	2 cut(s)	255, 428
Tru9I	TTAA	2 cut(s)	255, 428
TscAI	CASTG	2 cut(s)	151, 656
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	4 cut(s)	535, 611, 706, 738
TspGWI	ACGGA	2 cut(s)	296, 334
TspRI	CASTG	2 cut(s)	151, 656
Tth111I	GACNNNGTC	1 cut(s)	710
Van91I	CCANNNNNTGG	1 cut(s)	651
VpaK11BI	GGWCC	3 cut(s)	617, 642, 668
XmiI	GTMKAC	2 cut(s)	471, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.