AT2G37100

Protamine P1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013294
Physical Location & Seq
Forward (+)
15590741 .. 15592282
1542 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G37100.1

Sequence Viewer

Length: 894 bp
ATGAGGTTTTCTTCATCTAGACCCGTTTCGAGTCCGGGTCGAACCGAAAACCCGCCTCTACTCATGCGGTTCTTGCGGACCAAAAGCAGAAGCAGAAGCCGTTCTCGTTCAAGAAGACCTATCTTTTTCCGTCGGAAAAATGCTTCTGCTGCGGCGGAGACACAAGAACCAACTTCACCTAAAGTCACTTGCATGGGTCAAGTAAGGATAAACCGATCAAAGAAACCCAAACCCGAAACTGCTCGAGTCTCCGGAGGTGCAACAGAAAGGCGACGCCAGAGCCGTCGGTGCGGGTGGGTCAAGAACGCTTTTCCCTGTCATTCTTTCACCGGAATAATCAAACCTACTTGCTTTAGCCCTGTGTGGCGTAAATGGAAATCATTTTCTCATGCTAGTTTCTCGAAAAAATCAGAGAAGAGATCAAGTTCGTCTAGAAGTGAACCTATCTTTGGCCGCTCCACGGTGGAGCCAGAGGAACCAGAAGAGACTCGAAAAGAAGAAAACCAAGAAGAAGAAGCAAGTTCATGTAAATCATTCACAGCTACACCACCGAGAAACGCTTTTTTACTAACTCGATGTAGATCTGCACCATATAGATCTCCTTCATCAGCTAATAGCTTATTTGAAGATCAAGAAGAGACAAATAAAGCTCCTTTCCAACGACACGCTTCGTCGGAAAATGTATCAGTTTCGGAAGAACCGAAGACAAGCGTTACAGAAACAACAGAGAGATTAGAGGATTCAAGAAGAGAATCAGCAGCGAGTGAAGAACCAAAACGAAGCGTTTTGGGATCACCACGACAGTGTCTGATCCTCACGCGCTGTAACTCGGAGCCAGCGAGACTCGTTCCCGAGATGGGTTATCGACAGAACCCAAGGTTGGGATTTACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

297

Amino Acids

33.76

Weight (kDa)

10.49

Isoelectric Point (pI)

97.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37100 AT5G03110
fragaria_vesca FvH4_6g15510
malus_domestica MD04G1102600.v1.1 MD12G1122400.v1.1
prunus_persica Prupe.6G240400_v2.0.a1
pyrus_communis pycom12g12120
rosa_chinensis RchiOBHm_Chr3g0469011
rosa_laevigata RLG00000024390
rosa_multiflora Rmu_co8173580.1_g000001 Rmu_sc0037667.1_g000001
rosa_roxburghii Rroxscaffold_2G00112190 Rroxscaffold_6G00412370
rosa_rugosa Rorug03G0098400
rosa_samantha Rh3AG147900 Rh3BG170500 Rh3DG204500
rosa_wichuraiana Rw3G013930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 456
AccII CGCG 1 cut(s) 820
AccIII TCCGGA 1 cut(s) 251
AciI CCGC 7 cut(s) 53, 67, 76, 152, 155, 291, 454
AclWI GGATC 2 cut(s) 799, 805
AcoI YGGCCR 1 cut(s) 451
AcyI GRCGYC 1 cut(s) 274
AfiI CCNNNNNNNGG 5 cut(s) 449, 460, 857, 880, 881
AgsI TTSAA 3 cut(s) 111, 626, 744
AjuI GAANNNNNNNTTGG 3 cut(s) 432, 464, 863
AleI CACNNNNGTG 1 cut(s) 802
AluBI AGCT 4 cut(s) 542, 611, 618, 650
AluI AGCT 4 cut(s) 542, 611, 618, 650
Alw26I GTCTC 5 cut(s) 152, 253, 479, 632, 835
AlwI GGATC 2 cut(s) 799, 805
AlwNI CAGNNNCTG 1 cut(s) 808
Ama87I CYCGRG 2 cut(s) 243, 851
Aor13HI TCCGGA 1 cut(s) 251
AoxI GGCC 1 cut(s) 451
ApeKI GCWGC 2 cut(s) 149, 758
Asp700I GAANNNNTTC 1 cut(s) 100
AspLEI GCGC 1 cut(s) 822
AspS9I GGNCC 1 cut(s) 78
AsuC2I CCSGG 1 cut(s) 36
AsuHPI GGTGA 3 cut(s) 168, 319, 786
AvaI CYCGRG 2 cut(s) 243, 851
AvaII GGWCC 1 cut(s) 78
BbsI GAAGAC 2 cut(s) 121, 710
BbvI GCAGC 2 cut(s) 136, 770
BccI CCATC 1 cut(s) 850
BceAI ACGGC 2 cut(s) 84, 267
BcnI CCSGG 1 cut(s) 36
BcoDI GTCTC 5 cut(s) 152, 253, 479, 632, 835
BfaI CTAG 3 cut(s) 18, 393, 432
BglII AGATCT 2 cut(s) 581, 596
BisI GCNGC 4 cut(s) 150, 153, 454, 759
BlsI GCNGC 4 cut(s) 151, 154, 455, 760
Bme1390I CCNGG 1 cut(s) 36
Bme18I GGWCC 1 cut(s) 78
BmeT110I CYCGRG 2 cut(s) 243, 851
BmgT120I GGNCC 1 cut(s) 78
BmiI GGNNCC 3 cut(s) 468, 477, 834
BmrFI CCNGG 1 cut(s) 36
BpiI GAAGAC 2 cut(s) 121, 710
BpuMI CCSGG 1 cut(s) 36
BsaAI YACGTR 1 cut(s) 891
BsaBI GATNNNNATC 1 cut(s) 580
BsaHI GRCGYC 1 cut(s) 274
BsaJI CCNNGG 2 cut(s) 459, 875
BsaWI WCCGGW 2 cut(s) 251, 329
Bsc4I CCNNNNNNNGG 5 cut(s) 449, 460, 857, 880, 881
Bse8I GATNNNNATC 1 cut(s) 580
BseAI TCCGGA 1 cut(s) 251
BseDI CCNNGG 2 cut(s) 459, 875
BseJI GATNNNNATC 1 cut(s) 580
BseLI CCNNNNNNNGG 5 cut(s) 449, 460, 857, 880, 881
BseXI GCAGC 2 cut(s) 136, 770
BsgI GTGCAG 1 cut(s) 570
Bsh1236I CGCG 1 cut(s) 820
BshFI GGCC 1 cut(s) 453
BsiHKCI CYCGRG 2 cut(s) 243, 851
BsiSI CCGG 3 cut(s) 35, 252, 330
BslI CCNNNNNNNGG 5 cut(s) 449, 460, 857, 880, 881
BsmAI GTCTC 5 cut(s) 152, 253, 479, 632, 835
BsnI GGCC 1 cut(s) 453
BsoBI CYCGRG 2 cut(s) 243, 851
Bsp13I TCCGGA 1 cut(s) 251
Bsp143I GATC 7 cut(s) 215, 419, 581, 596, 628, 791, 810
BspACI CCGC 7 cut(s) 53, 67, 76, 152, 155, 291, 454
BspANI GGCC 1 cut(s) 453
BspEI TCCGGA 1 cut(s) 251
BspFNI CGCG 1 cut(s) 820
BspLI GGNNCC 3 cut(s) 468, 477, 834
BspPI GGATC 2 cut(s) 799, 805
BsrBI CCGCTC 1 cut(s) 456
BssECI CCNNGG 2 cut(s) 459, 875
BssMI GATC 7 cut(s) 215, 419, 581, 596, 628, 791, 810
BssNI GRCGYC 1 cut(s) 274
BssT1I CCWWGG 1 cut(s) 875
Bst4CI ACNGT 2 cut(s) 463, 804
Bst6I CTCTTC 4 cut(s) 410, 477, 630, 742
BstACI GRCGYC 1 cut(s) 274
BstBAI YACGTR 1 cut(s) 891
BstC8I GCNNGC 1 cut(s) 837
BstDSI CCRYGG 1 cut(s) 459
BstFNI CGCG 1 cut(s) 820
BstHHI GCGC 1 cut(s) 822
BstKTI GATC 7 cut(s) 218, 422, 584, 599, 631, 794, 813
BstMAI GTCTC 5 cut(s) 152, 253, 479, 632, 835
BstMBI GATC 7 cut(s) 215, 419, 581, 596, 628, 791, 810
BstMWI GCNNNNNNNGC 3 cut(s) 73, 149, 288
BstSCI CCNGG 1 cut(s) 34
BstUI CGCG 1 cut(s) 820
BstV1I GCAGC 2 cut(s) 136, 770
BstV2I GAAGAC 2 cut(s) 121, 710
BstX2I RGATCY 2 cut(s) 581, 596
BstYI RGATCY 2 cut(s) 581, 596
BsuRI GGCC 1 cut(s) 453
BtgI CCRYGG 1 cut(s) 459
BtsIMutI CAGTG 1 cut(s) 809
Cac8I GCNNGC 1 cut(s) 837
CaiI CAGNNNCTG 1 cut(s) 808
CfoI GCGC 1 cut(s) 822
Cfr13I GGNCC 1 cut(s) 78
CseI GACGC 1 cut(s) 282
CviAII CATG 4 cut(s) 64, 193, 389, 525
DpnI GATC 7 cut(s) 217, 421, 583, 598, 630, 793, 812
DpnII GATC 7 cut(s) 215, 419, 581, 596, 628, 791, 810
EaeI YGGCCR 1 cut(s) 451
Eam1104I CTCTTC 4 cut(s) 410, 477, 630, 742
EarI CTCTTC 4 cut(s) 410, 477, 630, 742
EciI GGCGGA 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 875
Eco47I GGWCC 1 cut(s) 78
Eco88I CYCGRG 2 cut(s) 243, 851
EcoT14I CCWWGG 1 cut(s) 875
ErhI CCWWGG 1 cut(s) 875
FaeI CATG 4 cut(s) 67, 196, 392, 528
FaiI YATR 6 cut(s) 65, 194, 390, 526, 592, 594
FatI CATG 4 cut(s) 63, 192, 388, 524
FauI CCCGC 2 cut(s) 60, 284
Fnu4HI GCNGC 4 cut(s) 150, 153, 454, 759
Fsp4HI GCNGC 4 cut(s) 150, 153, 454, 759
FspBI CTAG 3 cut(s) 18, 393, 432
GlaI GCGC 1 cut(s) 821
GluI GCNGC 4 cut(s) 150, 153, 454, 759
HaeIII GGCC 1 cut(s) 453
HapII CCGG 3 cut(s) 35, 252, 330
HgaI GACGC 1 cut(s) 282
HhaI GCGC 1 cut(s) 822
Hin1I GRCGYC 1 cut(s) 274
Hin1II CATG 4 cut(s) 67, 196, 392, 528
Hin6I GCGC 1 cut(s) 820
HinP1I GCGC 1 cut(s) 820
HinfI GANTC 6 cut(s) 31, 246, 487, 740, 752, 843
HpaII CCGG 3 cut(s) 35, 252, 330
HphI GGTGA 3 cut(s) 168, 319, 786
Hpy166II GTNNAC 1 cut(s) 440
Hpy188I TCNGA 6 cut(s) 135, 412, 676, 694, 810, 832
Hpy188III TCNNGA 9 cut(s) 18, 111, 252, 301, 400, 432, 632, 744, 851
Hpy8I GTNNAC 1 cut(s) 440
Hpy99I CGWCG 4 cut(s) 135, 276, 288, 676
HpyAV CCTTC 1 cut(s) 612
HpyCH4III ACNGT 2 cut(s) 463, 804
HpyCH4IV ACGT 1 cut(s) 890
HpyCH4V TGCA 3 cut(s) 192, 260, 587
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 149, 288
HpySE526I ACGT 1 cut(s) 890
Hsp92I GRCGYC 1 cut(s) 274
Hsp92II CATG 4 cut(s) 67, 196, 392, 528
HspAI GCGC 1 cut(s) 820
Kpn2I TCCGGA 1 cut(s) 251
Kzo9I GATC 7 cut(s) 215, 419, 581, 596, 628, 791, 810
LmnI GCTCC 4 cut(s) 461, 466, 655, 832
LpnPI CCDG 9 cut(s) 48, 265, 290, 328, 343, 372, 483, 492, 849
MaeI CTAG 3 cut(s) 18, 393, 432
MaeII ACGT 1 cut(s) 890
MaeIII GTNAC 3 cut(s) 184, 712, 824
MalI GATC 7 cut(s) 217, 421, 583, 598, 630, 793, 812
MbiI CCGCTC 1 cut(s) 456
MboI GATC 7 cut(s) 215, 419, 581, 596, 628, 791, 810
MflI RGATCY 2 cut(s) 581, 596
MlyI GAGTC 4 cut(s) 40, 255, 481, 837
MmeI TCCRAC 3 cut(s) 113, 654, 682
MnlI CCTC 5 cut(s) 66, 248, 466, 730, 824
MroI TCCGGA 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 100
MslI CAYNNNNRTG 2 cut(s) 191, 802
MspI CCGG 3 cut(s) 35, 252, 330
MspR9I CCNGG 1 cut(s) 36
MvnI CGCG 1 cut(s) 820
MwoI GCNNNNNNNGC 3 cut(s) 73, 149, 288
NciI CCSGG 1 cut(s) 36
NdeII GATC 7 cut(s) 215, 419, 581, 596, 628, 791, 810
NlaIII CATG 4 cut(s) 67, 196, 392, 528
NlaIV GGNNCC 3 cut(s) 468, 477, 834
NmuCI GTSAC 1 cut(s) 184
OliI CACNNNNGTG 1 cut(s) 802
PaeR7I CTCGAG 1 cut(s) 243
PcsI WCGNNNNNNNCGW 3 cut(s) 280, 698, 836
PdmI GAANNNNTTC 1 cut(s) 100
PfeI GAWTC 2 cut(s) 740, 752
PflFI GACNNNGTC 1 cut(s) 804
PkrI GCNGC 4 cut(s) 151, 154, 455, 760
PleI GAGTC 4 cut(s) 39, 254, 481, 837
PpsI GAGTC 4 cut(s) 39, 254, 481, 837
Ppu21I YACGTR 1 cut(s) 891
PspN4I GGNNCC 3 cut(s) 468, 477, 834
PspPI GGNCC 1 cut(s) 78
PspXI VCTCGAGB 1 cut(s) 243
PstNI CAGNNNCTG 1 cut(s) 808
PsuI RGATCY 2 cut(s) 581, 596
PsyI GACNNNGTC 1 cut(s) 804
RseI CAYNNNNRTG 2 cut(s) 191, 802
SatI GCNGC 4 cut(s) 150, 153, 454, 759
Sau3AI GATC 7 cut(s) 215, 419, 581, 596, 628, 791, 810
Sau96I GGNCC 1 cut(s) 78
SchI GAGTC 4 cut(s) 40, 255, 481, 837
ScrFI CCNGG 1 cut(s) 36
Sfr274I CTCGAG 1 cut(s) 243
SinI GGWCC 1 cut(s) 78
SlaI CTCGAG 1 cut(s) 243
SmiMI CAYNNNNRTG 2 cut(s) 191, 802
SmlI CTYRAG 1 cut(s) 243
SmoI CTYRAG 1 cut(s) 243
SsiI CCGC 7 cut(s) 53, 67, 76, 152, 155, 291, 454
SspMI CTAG 3 cut(s) 18, 393, 432
StyD4I CCNGG 1 cut(s) 34
StyI CCWWGG 1 cut(s) 875
TaaI ACNGT 2 cut(s) 463, 804
TaiI ACGT 1 cut(s) 893
TaqI TCGA 7 cut(s) 29, 40, 244, 401, 490, 574, 865
TauI GCSGC 2 cut(s) 155, 456
TfiI GAWTC 2 cut(s) 740, 752
TscAI CASTG 1 cut(s) 809
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 2 cut(s) 149, 758
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 2 cut(s) 513, 594
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 1 cut(s) 809
Tth111I GACNNNGTC 1 cut(s) 804
VpaK11BI GGWCC 1 cut(s) 78
XbaI TCTAGA 2 cut(s) 17, 431
XhoI CTCGAG 1 cut(s) 243
XmnI GAANNNNTTC 1 cut(s) 100
XspI CTAG 3 cut(s) 18, 393, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.